diff options
Diffstat (limited to 'wqflask/base/data_set.py')
| -rwxr-xr-x | wqflask/base/data_set.py | 30 |
1 files changed, 15 insertions, 15 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 0c7676c4..0903bf16 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -90,8 +90,8 @@ class Markers(object): self.markers = json.load(json_data_fh) def add_pvalues(self, p_values): - print("length of self.markers:", len(self.markers)) - print("length of p_values:", len(p_values)) + #print("length of self.markers:", len(self.markers)) + #print("length of p_values:", len(p_values)) # THIS IS only needed for the case when we are limiting the number of p-values calculated if len(self.markers) < len(p_values): @@ -161,7 +161,7 @@ class DatasetGroup(object): self.f1list = None self.parlist = None self.get_f1_parent_strains() - print("parents/f1s: {}:{}".format(self.parlist, self.f1list)) + #print("parents/f1s: {}:{}".format(self.parlist, self.f1list)) self.species = webqtlDatabaseFunction.retrieve_species(self.name) @@ -170,7 +170,7 @@ class DatasetGroup(object): def get_markers(self): - print("self.species is:", self.species) + #print("self.species is:", self.species) if self.species == "human": marker_class = HumanMarkers else: @@ -293,14 +293,14 @@ class DataSet(object): self.name, self.name, self.name)) - print("query_args are:", query_args) + #print("query_args are:", query_args) - print(""" - SELECT Id, Name, FullName, ShortName - FROM %s - WHERE public > %s AND - (Name = '%s' OR FullName = '%s' OR ShortName = '%s') - """ % (query_args)) + #print(""" + # SELECT Id, Name, FullName, ShortName + # FROM %s + # WHERE public > %s AND + # (Name = '%s' OR FullName = '%s' OR ShortName = '%s') + # """ % (query_args)) self.id, self.name, self.fullname, self.shortname = g.db.execute(""" SELECT Id, Name, FullName, ShortName @@ -624,12 +624,12 @@ class MrnaAssayDataSet(DataSet): and ProbeSetFreezeId = {} """.format(escape(str(self.id))) results = g.db.execute(query).fetchall() - print("After get_trait_list query") + #print("After get_trait_list query") trait_data = {} for trait in results: print("Retrieving sample_data for ", trait[0]) trait_data[trait[0]] = self.retrieve_sample_data(trait[0]) - print("After retrieve_sample_data") + #print("After retrieve_sample_data") return trait_data def get_trait_data(self): @@ -763,7 +763,7 @@ class MrnaAssayDataSet(DataSet): """ % (escape(str(this_trait.dataset.id)), escape(this_trait.name))) - print("query is:", pf(query)) + #print("query is:", pf(query)) result = g.db.execute(query).fetchone() @@ -926,7 +926,7 @@ class TempDataSet(DataSet): def geno_mrna_confidentiality(ob): dataset_table = ob.type + "Freeze" - print("dataset_table [%s]: %s" % (type(dataset_table), dataset_table)) + #print("dataset_table [%s]: %s" % (type(dataset_table), dataset_table)) query = '''SELECT Id, Name, FullName, confidentiality, AuthorisedUsers FROM %s WHERE Name = %%s''' % (dataset_table) |