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Diffstat (limited to 'web/webqtl/textUI/cmdSearchGene.py')
-rwxr-xr-x | web/webqtl/textUI/cmdSearchGene.py | 70 |
1 files changed, 0 insertions, 70 deletions
diff --git a/web/webqtl/textUI/cmdSearchGene.py b/web/webqtl/textUI/cmdSearchGene.py deleted file mode 100755 index c2c71815..00000000 --- a/web/webqtl/textUI/cmdSearchGene.py +++ /dev/null @@ -1,70 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -import string - -from cmdClass import cmdClass -from search.TextSearchPage import TextSearchPage - -######################################### -# Search Gene Symbol PAGE -######################################### -class cmdSearchGene(cmdClass): - def __init__(self,fd): - #example - cmdClass.__init__(self,fd) - self.page = None - self.text = "" - fd.geneName = fd.formdata.getvalue('gene') - fd.returnFmt = fd.formdata.getvalue('format', 'html') - if fd.geneName: - fd.geneName = string.strip(fd.geneName) - fd.refseq = fd.formdata.getvalue('refseq') - if fd.refseq: - fd.refseq = string.strip(fd.refseq) - fd.genbankid = fd.formdata.getvalue('genbankid') - if fd.genbankid: - fd.genbankid = string.strip(fd.genbankid) - fd.geneid = fd.formdata.getvalue('geneid') - if fd.geneid: - fd.geneid = string.strip(fd.geneid) - if 1: - if not (fd.geneName or fd.refseq or fd.genbankid or fd.geneid): - raise "ValueError" - fd.searchAlias = fd.formdata.getvalue('alias') - if fd.searchAlias != '1': - fd.searchAlias = None - self.page = TextSearchPage(fd) - if fd.returnFmt != 'text': - pass - else: - self.text = self.page.output - self.page = None - elif "ValueError": - self.text = "You need to submit a Gene name, a Refseq ID, or a GenBank ID" - else: - self.text = "Error occurs while searching the database" - |