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Diffstat (limited to 'web/webqtl/submitTrait/BatchSubmitPage.py')
| -rwxr-xr-x | web/webqtl/submitTrait/BatchSubmitPage.py | 142 |
1 files changed, 0 insertions, 142 deletions
diff --git a/web/webqtl/submitTrait/BatchSubmitPage.py b/web/webqtl/submitTrait/BatchSubmitPage.py deleted file mode 100755 index 1c0be1ed..00000000 --- a/web/webqtl/submitTrait/BatchSubmitPage.py +++ /dev/null @@ -1,142 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -import glob -from htmlgen import HTMLgen2 as HT -import os - -from base.templatePage import templatePage -from utility import webqtlUtil -from base import webqtlConfig - - -# XZ, 09/09/2008: From home, click "Batch Submission". -# XZ, 09/09/2008: This class generate what you see -######################################### -# BatchSubmitPage -######################################### - -class BatchSubmitPage(templatePage): - - def __init__(self, fd): - - templatePage.__init__(self, fd) - - self.dict['title'] = 'Batch Submission' - - TD_LEFT = """ - <TD vAlign=top width="40%" bgColor=#eeeeee> - <P class="title">Introduction</P> - <BLOCKQUOTE> - <P>The batch submission utility enables users to submit multiple - traits at the same time for analysis by the GeneNetwork and - WebQTL. The data will be stored on our server for no more than - 24 hours. None of the submitted data are stored or copied - elsewhere.</P> - <P>The file to be uploaded should follow correct format shown - in the <A Href="/sample.txt" class="normalsize" target="_blank"> - Sample</A>, <A Href="/sample2.txt" class="normalsize" - target="_blank">Sample2</A> text file.</P> - <P>Please follow the <A href="http://www.genenetwork.org/faq.html#Q-22" class="normalsize" target="_blank">guide</A> for naming your traits.</P> - </BLOCKQUOTE> - </TD> - """ - TD_RIGHT = HT.TD(valign="top",width="60%",bgcolor="#eeeeee") - main_title = HT.Paragraph("Batch Trait Submission Utility") - main_title.__setattr__("class","title") - - ############################# - - title1 = HT.Paragraph("1. Choose cross or RI set:") - title1.__setattr__("class","subtitle") - - STEP1 = HT.TableLite(cellSpacing=2,cellPadding=0,width="90%",border=0) - crossMenu = HT.Select(name='RISet', onChange='xchange()') - allRISets = map(lambda x: x[:-5], glob.glob1(webqtlConfig.GENODIR, '*.geno')) - allRISets.sort() - allRISets.remove("BayXSha") - allRISets.remove("ColXBur") - allRISets.remove("ColXCvi") - specMenuSub1 = HT.Optgroup(label = 'MOUSE') - specMenuSub2 = HT.Optgroup(label = 'RAT') - for item in allRISets: - if item != 'HXBBXH': - specMenuSub1.append(tuple([item,item])) - else: - specMenuSub2.append(tuple(['HXB/BXH', 'HXBBXH'])) - crossMenu.append(specMenuSub1) - crossMenu.append(specMenuSub2) - crossMenu.selected.append('BXD') - crossMenuText = HT.Paragraph('Select the cross or recombinant inbred \ - set from the menu below. ') - infoButton = HT.Input(type="button",Class="button",value="Info",\ - onClick="crossinfo2();") - # NL, 07/27/2010. variable 'IMGSTEP1' has been moved from templatePage.py to webqtlUtil.py; - TD1 = HT.TD(webqtlUtil.IMGSTEP1,width=58) - TD2 = HT.TD() - TD2.append(crossMenuText,crossMenu, infoButton) - STEP1.append(HT.TR(TD1,TD2),HT.TR(HT.TD(colspan=2,height=20))) - - ############################# - title2 = HT.Paragraph(" 2. Enter Trait Data:") - title2.__setattr__("class","subtitle") - - STEP2 = HT.TableLite(cellSpacing=2,cellPadding=0,width="90%",border=0) - Para1 = HT.Paragraph() - Para1.append('You can submit traits by entering a file name here. The \ - file should contain a number of no more than 100 traits. The file \ - should follow the file format described in this ', HT.Href(url=\ - "/sample.txt",Class="normalsize", target="_blank", \ - text= 'Sample'), ' text.') - - filebox = HT.Paragraph(HT.Input(type='file', name='batchdatafile', size=20)) - - # NL, 07/27/2010. variable 'IMGSTEP2' has been moved from templatePage.py to webqtlUtil.py; - TD1 = HT.TD(webqtlUtil.IMGSTEP2,width=58) - TD2 = HT.TD() - TD2.append(Para1,filebox) - STEP2.append(HT.TR(TD1,TD2),HT.TR(HT.TD(colspan=2,height=20))) - - ######################################### - hddn = {'FormID':'batSubmitResult'} - - form = HT.Form(cgi= os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE), \ - enctype='multipart/form-data', name='crossChoice', submit=HT.Input(type='hidden')) - - submit = HT.Input(type='button' ,name='next', value='Next',onClick=\ - 'batchSelection(this.form);',Class="button") - reset = HT.Input(type='reset' ,name='reset' ,value='Reset',Class="button") - # NL, 07/27/2010. variable 'IMGNEXT' has been moved from templatePage.py to webqtlUtil.py; - form.append(HT.Blockquote(title1,HT.Center(STEP1,webqtlUtil.IMGNEXT),title2,\ - HT.Center(STEP2,webqtlUtil.IMGNEXT)),HT.Center(HT.P(),submit,reset)) - - for key in hddn.keys(): - form.append(HT.Input(name=key, value=hddn[key], type='hidden')) - - TD_RIGHT.append(main_title,form) - - self.dict['body'] = TD_LEFT + str(TD_RIGHT) - |