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Diffstat (limited to 'web/webqtl/snpBrowser/snpBrowserUtils.py')
-rwxr-xr-x | web/webqtl/snpBrowser/snpBrowserUtils.py | 71 |
1 files changed, 0 insertions, 71 deletions
diff --git a/web/webqtl/snpBrowser/snpBrowserUtils.py b/web/webqtl/snpBrowser/snpBrowserUtils.py deleted file mode 100755 index 4da5c9cb..00000000 --- a/web/webqtl/snpBrowser/snpBrowserUtils.py +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - - # The columns that are to be displayed are chosen at the line about 1000, with categories["info"]; this initializes the columns and assigns a 'variable_name' :and: "Display Name" -columnNames = { - # The following are for ALL VARIANTS - 'variant':"Variant Type", - 'snpname':"SNP ID", # SnpAll.Id - 'chromosome':"Chromosome", - 'mb':"Mb", - 'sourceName':"Source", - 'sourceCreated':"Source Created", - 'sourceAdded':"Source Added", - 'sourceId':"Source", - 'gene':'Gene', - # The following are for SNP VARIANTS - 'source':'Source', - 'chr':'Chr', - 'snpId':"Submitter ID", #SnpAll.SnpName - 'mbCelera':"Mb (CDS)", - 'rs':"ID", - 'function':"Function", - 'type':"Type", - 'majorCount':"Major Count", - 'minorCount':"Minor Count", - 'missingCount':"Missing Count", - 'class':"Class", - 'flanking5':"Flanking 5'", - 'flanking3':"Flanking 3'", - 'blatScore':"BLAT Score", - 'majorAllele':"Major Allele", - 'minorAllele':"Minor Allele", - 'shortAlleles':'Reference', - "Proximal_Gap_bp":"Gap", - 'domain':'Domain', - 'ncbi':'NCBI Annotation', - 'conservation':'ConScore', - # The following are for INDEL VARIANTS - 'indelId':"ID", # Indel.Id Indel - 'indelName':"ID", # Indel.Name - 'indelType':"Type", # Indel.Type - 'indelChr':"InDel Chr", # Indel.Chromosome - 'indelMb_s':"Mb Start", # Indel.Mb_start - 'indelMb_e':"Mb End", # IndelAll.Mb_end - 'indelStrand':"Strand", # IndelAll.Strand - 'indelSize':"Size", # IndelAll.Size - 'indelSeq':"Sequence", # IndelAll.Sequence -}
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