diff options
Diffstat (limited to 'web/webqtl/cmdLine/cmdIntervalMappingPage.py')
| -rwxr-xr-x | web/webqtl/cmdLine/cmdIntervalMappingPage.py | 75 |
1 files changed, 0 insertions, 75 deletions
diff --git a/web/webqtl/cmdLine/cmdIntervalMappingPage.py b/web/webqtl/cmdLine/cmdIntervalMappingPage.py deleted file mode 100755 index 8e0a3d92..00000000 --- a/web/webqtl/cmdLine/cmdIntervalMappingPage.py +++ /dev/null @@ -1,75 +0,0 @@ -# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. -# -# This program is free software: you can redistribute it and/or modify it -# under the terms of the GNU Affero General Public License -# as published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -# See the GNU Affero General Public License for more details. -# -# This program is available from Source Forge: at GeneNetwork Project -# (sourceforge.net/projects/genenetwork/). -# -# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) -# at rwilliams@uthsc.edu and xzhou15@uthsc.edu -# -# -# -# This module is used by GeneNetwork project (www.genenetwork.org) -# -# Created by GeneNetwork Core Team 2010/08/10 -# -# Last updated by GeneNetwork Core Team 2010/10/20 - -import os - -from base import webqtlConfig -from base.templatePage import templatePage -from utility import webqtlUtil - -######################################### -# Interval Mapping Page -######################################### - -class cmdIntervalMappingPage(templatePage): - - def __init__(self,fd): - - templatePage.__init__(self, fd) - - wtext = "Mapping " - try: - selectedChr = int(fd.formdata.getvalue('chromosomes')) + 1 - if selectedChr < 1: - raise "ValueError" - if selectedChr == 21 or (selectedChr == 20 and fd.RISet != 'HXBBXH'): - selectedChr = 'X' - wtext += 'chromosome %s ' % selectedChr - except: - wtext += 'whole genome ' - - perm = 0 - if fd.formdata.getvalue('permCheck'): - perm = 1 - wtext += 'with %d permutation tests ' % fd.nperm - - boot = 0 - if fd.formdata.getvalue('bootCheck'): - boot = 1 - if perm: - wtext += 'and %d bootstrap tests ' % fd.nboot - else: - wtext += 'with %d bootstrap tests ' % fd.nboot - - if boot == 0 and perm == 0: - wtext += "without permutation or bootstrap tests" - - filename = self.session("Interval Mapping", wtext) - webqtlUtil.dump_session(fd, os.path.join(webqtlConfig.TMPDIR, filename +'.session')) - url = webqtlConfig.REFRESHDIR % (webqtlConfig.CGIDIR, self.filename) - os.system("%s %swebqtlCmdLine.py interval %s >/dev/null 2>&1 &" % (webqtlConfig.PythonPath, webqtlConfig.CMDLINEDIR, filename)) - self.redirection = url - |