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Diffstat (limited to 'web/webqtl/base/admin.py')
-rwxr-xr-x | web/webqtl/base/admin.py | 88 |
1 files changed, 88 insertions, 0 deletions
diff --git a/web/webqtl/base/admin.py b/web/webqtl/base/admin.py new file mode 100755 index 00000000..a04df2da --- /dev/null +++ b/web/webqtl/base/admin.py @@ -0,0 +1,88 @@ +# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +# See the GNU Affero General Public License for more details. +# +# This program is available from Source Forge: at GeneNetwork Project +# (sourceforge.net/projects/genenetwork/). +# +# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) +# at rwilliams@uthsc.edu and xzhou15@uthsc.edu +# +# +# +# This module is used by GeneNetwork project (www.genenetwork.org) +# +# Created by GeneNetwork Core Team 2010/08/10 +# +# Last updated by GeneNetwork Core Team 2010/10/20 + + + + + +#XZ, 04/02/2009: we should put this into database. + + +###LIST of databases used into gene name query + + +ADMIN_search_dbs = { + 'rat': {'PERITONEAL FAT': ['FT_2A_0605_Rz'], + 'KIDNEY': ['KI_2A_0405_Rz'], + 'ADRENAL GLAND': ['HXB_Adrenal_1208'], + 'HEART': ['HXB_Heart_1208'] + }, + 'mouse': {'CEREBELLUM': ['CB_M_0305_R'], + 'STRIATUM': ['SA_M2_0905_R', 'SA_M2_0405_RC', 'UTHSC_1107_RankInv', 'Striatum_Exon_0209'], + 'HIPPOCAMPUS': ['HC_M2_0606_R', 'UMUTAffyExon_0209_RMA'], + 'WHOLE BRAIN': ['BR_M2_1106_R', 'IBR_M_0106_R', 'BRF2_M_0805_R', 'UCLA_BHF2_BRAIN_0605'], + 'LIVER': ['LV_G_0106_B', 'UCLA_BHF2_LIVER_0605'], + 'EYE': ['Eye_M2_0908_R'], + 'HEMATOPOIETIC STEM CELLS': ['HC_U_0304_R'], + 'KIDNEY': ['MA_M2_0806_R'], + 'MAMMARY TUMORS': ['MA_M_0704_R', 'NCI_Agil_Mam_Tum_RMA_0409'], + 'PREFRONTAL CORTEX': ['VCUSal_1206_R'], + 'SPLEEN': ['IoP_SPL_RMA_0509'], + 'NUCLEUS ACCUMBENS': ['VCUSalo_1007_R'], + 'NEOCORTEX': ['HQFNeoc_0208_RankInv'], + 'ADIPOSE': ['UCLA_BHF2_ADIPOSE_0605'], + 'RETINA': ['Illum_Retina_BXD_RankInv0410'] + }, + 'human': { + 'LYMPHOBLAST B CELL': ['Human_1008', 'UT_CEPH_RankInv0909'], + 'WHOLE BRAIN': ['GSE5281_F_RMA0709', 'GSE15222_F_RI_0409'] + } + } + + +###LIST of tissue alias + +ADMIN_tissue_alias = {'CEREBELLUM': ['Cb'], + 'STRIATUM': ['Str'], + 'HIPPOCAMPUS': ['Hip'], + 'WHOLE BRAIN': ['Brn'], + 'LIVER': ['Liv'], + 'EYE': ['Eye'], + 'PERITONEAL FAT': ['Fat'], + 'HEMATOPOIETIC STEM CELLS': ['Hsc'], + 'KIDNEY': ['Kid'], + 'ADRENAL GLAND': ['Adr'], + 'HEART': ['Hea'], + 'MAMMARY TUMORS': ['Mam'], + 'PREFRONTAL CORTEX': ['Pfc'], + 'SPLEEN': ['Spl'], + 'NUCLEUS ACCUMBENS': ['Nac'], + 'NEOCORTEX': ['Ctx'], + 'ADIPOSE': ['Wfat'], + 'RETINA': ['Ret'] + } + + |