diff options
Diffstat (limited to 'web/sample.txt')
| -rwxr-xr-x | web/sample.txt | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/web/sample.txt b/web/sample.txt new file mode 100755 index 00000000..1b4971f8 --- /dev/null +++ b/web/sample.txt @@ -0,0 +1 @@ +#Add comments by starting lines with #
#Trait names usually start with major categories (e.g., Central nervous system, development) followed by a colon and then the specfic trait (e.g., Brain weight at embryonic day 16), followed by the units in square brackets (e.g., [mg]).
#Follow trait name conventions (see http://www.genenetwork.org/faq.html#Q-22) if possible for data intended for permanent use in GeneNetwork (see examples below)
#If you export this file from Excel use Tab-Delimited Text output and make sure that the text file does not have unintended hyphens
#Last edit of this example file by Rob Williams (rwilliams@uthsc.edu), November 2010
#This sample can be used as is for mouse BXD cases. It is in a column format (each trait in a column). You can add up to about 100 traits in this format
#Row should be tab-delimited
#Missing values MUST be represented with a non-numeric character such as an x
#Trait Name / Case Identifier should always be in the 1st row or column
#Trait name can contain white space but no tabs
#Each row or column must have the same number of items
#Case identifiers must match existing cases already in the GeneNetwork database exactly.
#If the case identifier field contains unknown cases or strains (for example BXD999)
#then the file will be rejected by GeneNetwork.
#The cell below that starts with the @ symbol defines the format of the text file (row or column format)
#The @ symbol must be followed by format=column or format=row
#@format=column, each column is a trait
#@format=row, each row is a trait
#The OPTIONAL SE/N columns or rows should immediately follow
#the corresponding Trait value columns or rows
#You do NOT need to enter names of missing cases or strains. In this example we list all BXD strains as of Nov 2010 for completeness only.
#Data and columns start on the next line
@format=column Central nervous system, morphology: Brain weight in 2-month-old adult males and females (balanced sample) on a standard diet (Teklad 7001 4% fat) [mg] SE N Central nervous system, behavior, learning and memory: Learning speed, initial acquisition of task, trials to criterion in naive 4-month adult males (Med Associaes nose poke system chamber, low values = faster learning) [n] SE N Infectious disease, immune function: Cowpox virus maximum body temperature over two weeks after 10^6 pfu intranasal inoculation, males and females between 40 and 152 days of age, residuals corrected for sex, age and body weight [scaled deg C where -0.5 is >34.5 and 0.5 is <38] SE N Musculoskeletal system: Bone mineral density (WC-BMD) in females corrected for whole body weight [mg/cm2] SE N
B6D2F1 460.121 2.60665 87 469.31 2.88193 87 457.375 3.0838 87 465.968 3.47246 87
D2B6F1 X X X X X X X X X X X X
C57BL/6J 470.253 1.65473 254 485.055 1.72232 254 474.438 1.66519 254 488.776 1.70491 254
DBA/2J 400.692 2.59554 146 410.091 2.5812 146 404.971 2.47942 146 414.383 2.49363 146
BXD1 470.588 3.80836 68 483.953 4.2272 68 478.054 3.3748 68 492.576 3.68357 68
BXD2 432.944 3.3022 62 444.595 3.69905 62 427.536 3.15486 62 438.697 3.59831 62
BXD5 514.051 5.13482 75 525.3 5.18907 75 519.353 4.72786 75 530.186 4.90383 75
BXD6 389.764 3.37264 69 399.5 3.5015 69 390.511 3.61206 69 400.747 3.80201 69
BXD8 436.857 4.96952 54 445.898 5.20314 54 437.676 5.14337 54 445.859 5.42383 54
BXD9 435.807 2.42042 99 443.584 2.75916 99 429.642 2.74812 99 437.196 3.12191 99
BXD11 444.262 3.76132 68 453.038 3.8222 68 443.651 3.17695 68 452.583 3.39209 68
BXD12 444.003 2.22527 114 456.622 2.32208 114 448.963 2.1487 114 461.049 2.27128 114
BXD13 398.062 4.11123 61 406.734 4.34944 61 403.899 4.1683 61 411.334 4.50678 61
BXD14 421.972 3.03449 97 433.693 3.2102 97 426.136 2.87368 97 438.413 3.13297 97
BXD15 455.929 4.26894 31 466.823 4.49865 31 452.669 3.61616 31 462.643 4.08597 31
BXD16 448.976 4.52902 49 461.849 4.95118 49 454.554 3.61401 49 466.364 4.14038 49
BXD18 428.546 2.92179 46 440.3 3.11655 46 431.124 2.7744 46 442.305 3.05868 46
BXD19 425.081 4.83339 43 436.898 5.11931 43 430.41 4.44471 43 442.403 4.82384 43
BXD20 391.707 3.79352 29 404.593 4.28753 29 402.79 3.69568 29 415.123 4.07703 29
BXD21 437.124 5.27705 55 448.585 5.44503 55 438.8 4.83952 55 450.265 5.07514 55
BXD22 449.665 3.05039 26 464.446 3.27287 26 455.448 2.13444 26 469.971 2.44062 26
BXD23 421.082 4.17855 40 435.918 4.27217 40 427.6 3.42308 40 442.154 3.58323 40
BXD24A 385.6 5.60732 13 385.6 5.60732 13 390.801 5.55982 13 389.581 5.4454 13
BXD24 409.5 4.16289 31 422.906 4.08013 31 403.73 3.06946 31 417.29 3.18527 31
BXD25 408.762 4.37784 34 421.032 4.56433 34 415.684 3.88375 34 427.953 4.06899 34
BXD27 367.645 2.7341 76 378.007 2.79269 76 372.155 2.84779 76 381.942 2.89361 76
BXD28 402.813 2.85413 47 410.553 3.35291 47 406.136 3.25772 47 412.801 3.745 47
BXD29 395.046 4.62962 28 408.068 4.55469 28 402.946 4.23511 28 415.167 4.14587 28
BXD30 372.922 4.79163 23 386.165 4.8948 23 385.661 4.3811 23 398.138 4.39818 23
BXD31 416.129 2.65675 90 428.674 2.83145 90 418.728 2.20187 90 430.899 2.43834 90
BXD32 430.71 2.62957 144 440.238 2.67964 144 428.894 2.72517 144 437.842 2.8203 144
BXD33 428.577 4.89593 40 441.843 4.96852 40 436.37 4.92529 40 449.352 5.07003 40
BXD34 420.545 4.3474 78 426.309 4.51253 78 415.725 4.40693 78 421.077 4.70507 78
BXD35 417.244 6.80333 18 429.194 6.75819 18 425.596 4.84255 18 436.49 4.73761 18
BXD36 415.869 2.8703 101 423.973 3.02825 101 419.859 2.52 101 427.587 2.76698 101
BXD37 424.187 9.76611 8 438.875 9.68529 8 410.872 7.37248 8 429.919 6.76501 8
BXD38 420.67 4.27944 50 431.658 4.84149 50 428.497 3.71159 50 438.688 4.26129 50
BXD39 416.726 2.18479 89 423.244 2.15454 89 414.214 2.20137 89 420.157 2.29632 89
BXD40 436.781 2.75789 94 444.022 3.03073 94 439.594 2.41315 94 446.549 2.7255 94
BXD41 X X X X X X X X X X X X
BXD42 442.56 3.86432 48 448.86 4.34837 48 443.02 3.57878 48 448.954 4.1756 48
BXD43 421.38 2.25784 142 430.715 2.21256 142 423.284 2.1093 142 432.182 2.05193 142
BXD44 438.364 2.07963 202 447.31 2.16943 202 437.138 1.99189 202 446.894 2.09827 202
BXD45 442.016 3.46504 82 452.188 3.44085 82 446.642 3.03991 82 457.649 3.02277 82
BXD48 412.269 2.41433 103 426.145 2.5985 103 412.671 2.21405 103 426.057 2.30756 103
BXD49 405.833 7.27286 6 405.833 7.27286 6 407.057 6.12464 6 405.682 5.94263 6
BXD50 417.544 5.64804 48 418.835 5.67934 48 418.391 5.25401 48 419.602 5.35175 48
BXD51 440.517 2.13807 173 450.949 2.16332 173 439.887 2.15283 173 450.419 2.19282 173
BXD52 X X X X X X X X X X X X
BXD53 X X X X X X X X X X X X
BXD54 X X X X X X X X X X X X
BXD55 469.816 4.59255 56 470.787 4.69293 56 469.944 4.03921 56 470.528 4.19855 56
BXD56 434.81 4.88569 49 434.81 4.88569 49 429.454 4.71976 49 429.871 4.71861 49
BXD59 X X X X X X X X X X X X
BXD60 448.498 1.7843 189 458.608 1.76945 189 437.122 2.06878 189 447.543 2.11393 189
BXD61 457.539 2.95708 99 462.095 3.1982 99 454.284 2.53187 99 458.602 2.76129 99
BXD62 437.164 1.71684 176 446.616 1.7703 176 437.106 1.68988 176 446.437 1.72316 176
BXD63 408.1 6.72499 18 418.356 7.49172 18 414.111 6.54852 18 424.192 6.9783 18
BXD64 446.6 12.1 2 463.25 12.55 2 436.282 9.18872 2 454.906 10.0998 2
BXD65 424.386 4.09947 36 430.269 4.82246 36 421.458 3.29804 36 428.059 3.87902 36
BXD66 410.231 2.81867 81 414.089 3.08511 81 411.204 2.74612 81 416.054 2.96391 81
BXD67 408.775 10.0394 8 408.775 10.0394 8 412.544 8.80494 8 412.731 8.77247 8
BXD68 444.11 4.52665 29 448.166 4.96748 29 437.758 4.47189 29 443.091 4.64852 29
BXD69 451.167 2.00258 188 459.29 1.99617 188 447.899 1.92635 188 455.804 1.9943 188
BXD70 429.748 2.65067 90 432.61 2.77249 90 426.008 2.37461 90 429.612 2.53147 90
BXD71 443.741 5.41424 32 443.741 5.41424 32 443.397 4.89018 32 444.027 5.00329 32
BXD72 X X X X X X X X X X X X
BXD73 439.678 2.1279 165 447.399 2.11998 165 442.63 1.9248 165 450.786 1.98543 165
BXD74 390.75 6.66302 4 390.75 6.66302 4 397.488 6.81866 4 396.589 6.86468 4
BXD75 421.067 2.45511 102 426.632 2.5384 102 421.741 2.18643 102 427.256 2.2339 102
BXD76 436.1 12.5587 3 452.333 13.0425 3 433.432 10.3084 3 452.429 10.8048 3
BXD77 453.04 4.54135 47 462.698 4.79556 47 437.88 4.11233 47 447.104 4.18885 47
BXD78 417.172 5.71781 25 432.592 5.92743 25 419.535 5.98787 25 434.523 6.1596 25
BXD79 374.017 5.13812 6 376.25 4.74649 6 382.556 6.51856 6 386.006 6.53608 6
BXD80 439.776 4.2592 50 443.226 4.74159 50 440.205 3.67541 50 444.4 4.23046 50
BXD81 406.688 10.613 8 410.863 13.0263 8 412.357 12.4286 8 418.587 17.0533 8
BXD83 439.462 6.55372 32 439.462 6.55372 32 448.101 6.16712 32 448.472 6.22942 32
BXD84 409.604 6.93455 26 409.604 6.93455 26 411.322 5.54646 26 411.292 5.55144 26
BXD85 431.285 4.48793 46 442.554 4.92919 46 429.114 4.01427 46 439.863 4.3813 46
BXD86 484.774 2.73209 96 493.732 2.99082 96 478.721 2.31356 96 487.895 2.51441 96
BXD87 429.752 3.24105 90 433.656 3.32098 90 426.975 2.55312 90 432.278 2.73586 90
BXD88 X X X X X X X X X X X X
BXD89 446.717 3.95748 54 452.848 4.0834 54 439.92 2.77706 54 446.726 3.14217 54
BXD90 434.574 2.74025 61 442.911 3.28701 61 432.472 2.52911 61 441.078 2.95238 61
BXD91 462.85 15.3439 6 480.033 15.9208 6 464.823 11.901 6 483.377 13.6817 6
BXD92 434.901 2.6265 94 447.012 2.65841 94 426.579 2.61316 94 437.93 2.5882 94
BXD93 415.322 9.9441 18 425.9 8.87493 18 413.024 8.74523 18 423.064 8.11772 18
BXD94 X X X X X X X X X X X X
BXD95 442.48 13.9709 15 442.48 13.9709 15 438.914 11.6683 15 438.51 11.8244 15
BXD96 416.705 2.40746 79 422.709 2.82137 79 414.948 1.84956 79 420.545 2.13275 79
BXD97 443.842 3.50265 60 452.41 3.81498 60 434.971 3.4102 60 443.171 3.57023 60
BXD98 412.735 5.93566 26 418.7 6.39862 26 412.886 6.08229 26 419.56 6.46353 26
BXD99 452.074 7.31644 23 452.074 7.31644 23 449.968 6.23857 23 450.869 6.38034 23
BXD100 445.842 3.91536 45 446.227 3.96688 45 436.52 3.96124 45 436.924 4.0852 45
BXD101 378.333 3.8873 6 378.333 3.8873 6 383.553 4.00709 6 382.171 3.99984 6
BXD102 402.891 8.39658 23 402.891 8.39658 23 398.186 9.88929 23 397.68 9.92951 23
BXD103 452.84 5.2315 5 452.84 5.2315 5 443.996 X 5 444.23 X 5
\ No newline at end of file |