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-<HTML><HEAD><TITLE>UWA Illumina Spleen (Nov08) RSN **</TITLE>
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-<P class="title">UWA Illumina Spleen (Nov08) RSN **  <A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A><BR><BR>Accession number: <A HREF="/webqtl/main.py?FormID=sharinginfo&GN_AccessionId=216">GN216</A></P>
-<P><font color="#FF0000">Waiting for the data provider to submit their info file</font></P>
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-<P class="subtitle">Summary:</P>
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-<P>All data was generated using female mice, 8 to 10 weeks old. RNA was extracted using the QIAGEN RNAeasy Plus kit. RNA was amplified using the Illumina Illumina TotalPrep RNA Amplification Kit. Sample were hybridized to Illumina MouseRef-8 V1.1 beadchips in 2008.
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-<P>Illumina 8.1 array data transformed using the Robust Spline Normalization (RSN) method.
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-<P>Please contact Dr. Grant Morahan (gem@waimr.uwa.edu.au), University of Western Australia, Perth, regarding this new data set.
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-<P>Data entered by Munish Mehta and Arthur Centeno, November 2, 2008.</P>
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-<P>Users of these mouse eye data may also find the following complementary resources extremely useful:
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-<LI> <A HREF="http://www.genenetwork.org" target="_blank" class="fs14">Link 1</A>.
-<LI> <A HREF="http://www.genenetwork.org" target="_blank" class="fs14">Link 2</A>.
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-<P class="subtitle">About the cases used to generate this set of data:</P>
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-<P>Please contact Dr. Grant Morahan at the University of Western Australia, Perth, regarding these data. All female young adult mice.</P>
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-<P class="subtitle">About the tissue used to generate this set of data:</P>
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-<P>eQTL Statistics:  Maximum LRS for this data set is 174.9 for probe ILM3870301 (Gene Symbol H2-Ea). The total number of probes with LOD > 10 and RS > 46 is 166</P>. This is an excellent yield for a data set consisting of 26 BXD strains, both parents and the B2D2F1. The latter three are not used in mapping.
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-<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Group</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Age</font></td><td><font color=#FFFFFF>Sex</font></td><td><font color=#FFFFFF>Source</font></td></tr>
-<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>GDP</td><td>129S1/SvImJ</td><td>59</td><td>F</td><td>UTHSC RW</td></tr>
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-<P class="subtitle">About downloading this data set:</P>
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-<td><font color=#FFFFFF>Index</font></td><td><font color=#FFFFFF>TubeID</font></td><td><font color=#FFFFFF>Strain</font></td><td><font color=#FFFFFF>Original CEL</font></td><td><font color=#FFFFFF>Scale factor</font></td><td><font color=#FFFFFF>Background Average</font></td><td><font color=#FFFFFF>Present</font></td><td><font color=#FFFFFF>Absent</font></td><td><font color=#FFFFFF>Marginal</font></td><td><font color=#FFFFFF>AFFX-b-ActinMur (3'/5')</font></td><td><font color=#FFFFFF>AFFX-GapdhMur (3'/5')</font></td><td><font color=#FFFFFF>Batch Id</font></td><td><font color=#FFFFFF>Used for batch control</font></td></tr>
-<tr bgcolor="#eeeeee"><td>1</td><td>R2595E.1</td><td>129S1/SvImJ</td><td>R2595E.1.CEL</td><td>1.79</td><td>115</td><td>61.00%</td><td>37.50%</td><td>1.50%</td><td>1.46</td><td>0.77</td><td>1</td><td>Y</td></tr>
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