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@@ -84,7 +84,7 @@ use `GN3_PYTHONPATH` environment that gets injected in the ./bin/genenetwork2 startup. A continuously deployed instance of genenetwork2 is available at -[https://gn2dev.genenetwork.org/](https://gn2dev.genenetwork.org/). This +[https://cd.genenetwork.org/](https://cd.genenetwork.org/). This instance is redeployed on every commit provided that the [continuous integration tests](https://ci.genenetwork.org/jobs/genenetwork2) pass. @@ -173,6 +173,25 @@ check the logs. If there is ERROR 1054 (42S22): Unknown column 'InbredSet.Family' in 'field list' it may be you are trying the small database. +### Run Scripts + +As part of the profiling effort, some scripts are added to run specific parts of the system under a profiler without running the entire web-server - as such, to run the script, you could do something like: + +``` +env HOME=/home/frederick \ + GN2_PROFILE=~/opt/gn2-latest \ + GN3_DEV_REPO_PATH=~/genenetwork/genenetwork3 \ + SQL_URI="mysql://username:password@host-ip:host-port/db_webqtl" \ + SERVER_PORT=5001 \ + bin/genenetwork2 ../gn2_settings.py \ + -cli python3 -m scripts.profile_corrs \ + ../performance_$(date +"%Y%m%dT%H:%M:%S").profile +``` + +and you can find the performance metrics at the file specified, in this case, a file starting with `performance_` with the date and time of the run, and ending with `.profile`. + +Please replace the environment variables in the sample command above with the appropriate values for your environment. + ## Documentation User documentation can be found |