diff options
| -rw-r--r-- | wqflask/tests/unit/wqflask/show_trait/test_export_trait_data.py | 15 | ||||
| -rw-r--r-- | wqflask/wqflask/show_trait/export_trait_data.py | 1 |
2 files changed, 8 insertions, 8 deletions
diff --git a/wqflask/tests/unit/wqflask/show_trait/test_export_trait_data.py b/wqflask/tests/unit/wqflask/show_trait/test_export_trait_data.py index f351c1ec..fbe39f13 100644 --- a/wqflask/tests/unit/wqflask/show_trait/test_export_trait_data.py +++ b/wqflask/tests/unit/wqflask/show_trait/test_export_trait_data.py @@ -19,9 +19,10 @@ class TestExportTraits(unittest.TestCase): @mock.patch("wqflask.show_trait.export_trait_data.datetime") @mock.patch("wqflask.show_trait.export_trait_data.create_trait") @mock.patch("wqflask.show_trait.export_trait_data.data_set") - def test_get_export_metadata(self, data_mock, trait_mock,date_mock): + def test_get_export_metadata(self, data_mock, trait_mock, date_mock): """test for exporting metadata with dataset.type=Publish""" - mock_dataset = AttributesSetter({"type": "Publish", "name": "HC_M2_0606_P", + mock_dataset = AttributesSetter({"type": "Publish", + "name": "HC_M2_0606_P", "dataset_name": "HC_M2_0606_P"}) mock_dataset.group = AttributesSetter({"name": "C"}) @@ -37,7 +38,8 @@ class TestExportTraits(unittest.TestCase): } - date_mock.datetime.now.return_value = datetime.datetime(2022, 8, 8, 19, 2, 31, 628813) + date_mock.datetime.now.return_value = datetime.datetime( + 2022, 8, 8, 19, 2, 31, 628813) trait_mock.return_value = AttributesSetter(trait_data) results = get_export_metadata({ @@ -46,21 +48,20 @@ class TestExportTraits(unittest.TestCase): "dataset": "HC_M2_0606_P" }) - expected = [["Phenotype ID:", "1460303_at"], ["Phenotype URL: ", "http://genenetwork.org/show_trait?trait_id=1460303_at&dataset=HC_M2_0606_P"], ["Group: ", "C"], - ["Phenotype: ", 'nuclear receptor subfamily 3","group C"," member 1 (glucocorticoid receptor); distal 3\' UTR'], + ["Phenotype: ", + 'nuclear receptor subfamily 3","group C"," member 1 (glucocorticoid receptor); distal 3\' UTR'], ["Authors: ", "XL_1"], ["Title: ", "Trait_1 title"], ["Journal: ", "N/A"], ["Dataset Link: ", "http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName=HC_M2_0606_P"], ["Export Date: ", "August 08, 2022"], - ["Export Time: ","19:02 GMT"], []] + ["Export Time: ", "19:02 GMT"]] self.assertEqual(results, expected) - def test_dict_to_sortedlist(self): """test for conversion of dict to sorted list""" sample1 = { diff --git a/wqflask/wqflask/show_trait/export_trait_data.py b/wqflask/wqflask/show_trait/export_trait_data.py index 6660ce4e..019d4d73 100644 --- a/wqflask/wqflask/show_trait/export_trait_data.py +++ b/wqflask/wqflask/show_trait/export_trait_data.py @@ -79,7 +79,6 @@ def get_export_metadata(trait_metadata): metadata.append( ["Export Time: ", datetime.datetime.now().strftime("%H:%M GMT")]) - metadata.append([]) return metadata |