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authorzsloan2021-10-19 05:29:46 +0000
committerzsloan2021-10-19 05:29:46 +0000
commitebfeee414acc0f59090fc86eaf2d631b7a3f0790 (patch)
treea994d024498e1c79578aaa9b767f454ae7821ab6 /wqflask
parent12b72d28b28ede3e891afa2e679570a27110a094 (diff)
downloadgenenetwork2-ebfeee414acc0f59090fc86eaf2d631b7a3f0790.tar.gz
Fixed some errors/logic for search results related to how the name/display name was being set
Diffstat (limited to 'wqflask')
-rw-r--r--wqflask/wqflask/search_results.py26
-rw-r--r--wqflask/wqflask/templates/search_result_page.html12
2 files changed, 24 insertions, 14 deletions
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index f8ecd178..dcc8021a 100644
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -112,22 +112,11 @@ class SearchResultPage:
trait_dict = {}
trait_dict['index'] = index + 1
- trait_dict['name'] = result[2]
-
- #ZS: Check permissions on a trait-by-trait basis for phenotype traits
- if self.dataset.type == "Publish":
- permissions = check_resource_availability(self.dataset, trait_dict['name'])
- if "view" not in permissions['data']:
- continue
-
- trait_dict['display_name'] = result[0]
- if self.dataset.type == "Publish":
- if result[10]:
- trait_dict['display_name'] = str(result[10]) + "_" + str(result[0])
trait_dict['dataset'] = self.dataset.name
- trait_dict['hmac'] = hmac.data_hmac('{}:{}'.format(trait_dict['name'], trait_dict['dataset']))
if self.dataset.type == "ProbeSet":
+ trait_dict['display_name'] = result[2]
+ trait_dict['hmac'] = hmac.data_hmac('{}:{}'.format(trait_dict['display_name'], trait_dict['dataset']))
trait_dict['symbol'] = "N/A" if result[3] is None else result[3].strip()
description_text = "N/A" if result[4] is None or str(result[4]) == "" else trait_dict['symbol']
@@ -144,10 +133,21 @@ class SearchResultPage:
trait_dict['lod_score'] = "N/A" if result[9] is None or result[9] == "" else f"{float(result[9]) / 4.61:.1f}"
trait_dict['lrs_location'] = "N/A" if result[13] is None or result[13] == "" or result[14] is None else f"Chr{result[13]}: {float(result[14]):.6f}"
elif self.dataset.type == "Geno":
+ trait_dict['display_name'] = str(result[0])
+ trait_dict['hmac'] = hmac.data_hmac('{}:{}'.format(trait_dict['display_name'], trait_dict['dataset']))
trait_dict['location'] = "N/A"
if (result[4] != "NULL" and result[4] != "") and (result[5] != 0):
trait_dict['location'] = f"Chr{result[4]}: {float(result[5]):.6f}"
elif self.dataset.type == "Publish":
+ # Check permissions on a trait-by-trait basis for phenotype traits
+ trait_dict['name'] = trait_dict['display_name'] = str(result[0])
+ trait_dict['hmac'] = hmac.data_hmac('{}:{}'.format(trait_dict['name'], trait_dict['dataset']))
+ permissions = check_resource_availability(self.dataset, trait_dict['display_name'])
+ if "view" not in permissions['data']:
+ continue
+
+ if result[10]:
+ trait_dict['display_name'] = str(result[10]) + "_" + str(result[0])
trait_dict['description'] = "N/A"
trait_dict['pubmed_id'] = "N/A"
trait_dict['pubmed_link'] = "N/A"
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index 5922ac75..95842316 100644
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -206,7 +206,7 @@
'width': "{{ max_widths.display_name * 8 }}px",
'targets': 2,
'render': function(data, type, row, meta) {
- return '<a target="_blank" href="/show_trait?trait_id=' + data.name + '&dataset=' + data.dataset + '">' + data.display_name + '</a>'
+ return '<a target="_blank" href="/show_trait?trait_id=' + data.display_name + '&dataset=' + data.dataset + '">' + data.display_name + '</a>'
}
},
{
@@ -362,6 +362,16 @@
'orderSequence': [ "desc", "asc"]
}{% elif dataset.type == 'Geno' %},
{
+ 'title': "Record",
+ 'type': "natural-minus-na",
+ 'width': "{{ max_widths.display_name * 9 }}px",
+ 'data': null,
+ 'targets': 2,
+ 'render': function(data, type, row, meta) {
+ return '<a target="_blank" href="/show_trait?trait_id=' + data.display_name + '&dataset=' + data.dataset + '">' + data.display_name + '</a>'
+ }
+ },
+ {
'title': "<div style='text-align: right;'>Location</div>",
'type': "natural-minus-na",
'width': "120px",