Finished integrating code that reads sample list from geno files

withouot using reaper and caches results so it doesn't need
to read the file every single time someone loads a page

1 files changed, 4 insertions, 1 deletions

diff --git a/wqflask/utility/helper_functions.py b/wqflask/utility/helper_functions.py
index d76a32ce..44f5321e 100644
--- a/wqflask/utility/helper_functions.py
+++ b/wqflask/utility/helper_functions.py
@@ -8,11 +8,14 @@ from base.species import TheSpecies
 def get_species_dataset_trait(self, start_vars):
     #assert type(read_genotype) == type(bool()), "Expecting boolean value for read_genotype"
     self.dataset = data_set.create_dataset(start_vars['dataset'])
+    print("After creating dataset")
     self.species = TheSpecies(dataset=self.dataset)
+    print("After creating species")
     self.this_trait = GeneralTrait(dataset=self.dataset,
                                    name=start_vars['trait_id'],
                                    cellid=None)
+    print("After creating trait")
 
     #if read_genotype:
-    self.dataset.group.read_genotype_file()
+    #self.dataset.group.read_genotype_file()
     #self.genotype = self.dataset.group.genotype