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| author | Munyoki Kilyungi | 2022-09-05 10:21:06 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-09-08 14:26:19 +0300 |
| commit | 8aef689bb1ab735ad4605af8b8b282672f92d2cf (patch) | |
| tree | 92506b8120f4223bfe92784ce7bd83d70ecae20b /wqflask/utility/genofile_parser.py | |
| parent | c341c4565126c47c78f220871d9e334dbe5aec73 (diff) | |
| download | genenetwork2-8aef689bb1ab735ad4605af8b8b282672f92d2cf.tar.gz | |
Replace g.db with database_connection() context manager
* wqflask/base/data_set.py (DatasetType.set_dataset_key): Replace g.db
with "database_connection()".
(DatasetGroup.get_mapping_methods): Ditto.
(DataSet.get_accession_id): Ditto.
(DataSet.retrieve_other_names): Rework "if ... else" logic to get rid
of "query" and "_vars" variables. Also, nest "try ... except" block
within "database_connection".
(DataSet.chunk_dataset): Replace g.db with "database_connection()".
(DataSet.get_probeset_data): Ditto.
(DataSet.get_trait_data): Ditto.
(PhenotypeDataSet.get_trait_info): Ditto.
(PhenotypeDataSet.retrieve_sample_data): Ditto.
(GenotypeDataSet.retrieve_sample_data): Ditto.
(MrnaAssayDataSet.get_trait_info): Ditto.
(MrnaAssayDataSet.retrieve_sample_data): Ditto.
(MrnaAssayDataSet.retrieve_genes): Ditto.
(TempDataSet): Ditto.
(geno_mrna_confidentiality): Ditto.
(query_table_timestamp): Ditto.
* wqflask/wqflask/api/router.py: Replace "flask.g" with
database_connection import.
(get_species_list): Replace g.db
with "database_connection()".
(get_species_info): Ditto.
(get_groups_list): Ditto.
(get_group_info): Ditto.
(get_datasets_for_group): Ditto.
(get_dataset_info): Ditto.
(fetch_traits): Ditto.
(all_sample_data): Ditto.
(trait_sample_data): Ditto.
(get_trait_info): Ditto.
(get_dataset_trait_ids): Ditto.
(get_samplelist): Ditto.
(get_group_id_from_dataset): Ditto.
(get_group_id): Ditto.
Diffstat (limited to 'wqflask/utility/genofile_parser.py')
0 files changed, 0 insertions, 0 deletions