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| author | Pjotr Prins | 2019-02-13 12:19:49 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2019-02-13 12:19:49 +0000 |
| commit | b6350b0d4cf6eb8002d40e86378d71e2823dacfb (patch) | |
| tree | 6fa6716af822e613cb81171471819a469394cc6f /wqflask/maintenance/geno_to_json.py | |
| parent | 5162d1484f01a51d65e7e70143146f018d96edb4 (diff) | |
| parent | 27a08a81107705f213d13fb7334a2b8eb4fd68d2 (diff) | |
| download | genenetwork2-b6350b0d4cf6eb8002d40e86378d71e2823dacfb.tar.gz | |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into gn-testing
Diffstat (limited to 'wqflask/maintenance/geno_to_json.py')
| -rw-r--r-- | wqflask/maintenance/geno_to_json.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/wqflask/maintenance/geno_to_json.py b/wqflask/maintenance/geno_to_json.py index 789a1691..9579812a 100644 --- a/wqflask/maintenance/geno_to_json.py +++ b/wqflask/maintenance/geno_to_json.py @@ -24,6 +24,8 @@ import simplejson as json from pprint import pformat as pf +#from utility.tools import flat_files + class EmptyConfigurations(Exception): pass @@ -183,8 +185,8 @@ class ConvertGenoFile(object): if __name__=="__main__": - Old_Geno_Directory = """/home/zas1024/genotype_files/genotype/""" - New_Geno_Directory = """/home/zas1024/genotype_files/genotype/json/""" + Old_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype""" + New_Geno_Directory = """/export/local/home/zas1024/gn2-zach/genotype_files/genotype/json""" #Input_File = """/home/zas1024/gene/genotype_files/genotypes/BXD.geno""" #Output_File = """/home/zas1024/gene/wqflask/wqflask/pylmm/data/bxd.snps""" #convertob = ConvertGenoFile("/home/zas1024/gene/genotype_files/genotypes/SRxSHRSPF2.geno", "/home/zas1024/gene/genotype_files/new_genotypes/SRxSHRSPF2.json") |