Removed a bunch of files/directories/packages that are no longer used and some corresponding imports

1 files changed, 0 insertions, 53 deletions

diff --git a/wqflask/maintenance/dataset/specials1.py b/wqflask/maintenance/dataset/specials1.py
deleted file mode 100644
index 9159fd7f..00000000
--- a/wqflask/maintenance/dataset/specials1.py
+++ /dev/null
@@ -1,53 +0,0 @@
-import utilities
-import datastructure
-import genotypes
-import probesets
-import calculate
-
-"""
-For:    Rob, GeneNetwork
-Date:   2014-02-04
-Function:
-    For BXD group, fetch probesets with given locus (mapping info).
-
-locus="rs3663871"
-"""
-def bxd_probesets_locus(locus, inbredsetid):
-    #
-    file = open('probesets_%s.txt' % (locus), 'w+')
-    file.write("GN Dataset ID\t")
-    file.write("Dataset Full Name\t")
-    file.write("ProbeSet Name\t")
-    file.write("Symbol\t")
-    file.write("ProbeSet Description\t")
-    file.write("Probe Target Description\t")
-    file.write("ProbeSet Chr\t")
-    file.write("ProbeSet Mb\t")
-    file.write("Mean\t")
-    file.write("LRS\t")
-    file.write("Geno Chr\t")
-    file.write("Geno Mb\t")
-    file.write("\n")
-    file.flush()
-    #
-    results = probesets.get_normalized_probeset(locus=locus, inbredsetid=inbredsetid)
-    for row in results:
-        file.write("%s\t" % (row[0]))
-        file.write("%s\t" % (utilities.clearspaces(row[2], default='')))
-        file.write("%s\t" % (utilities.clearspaces(row[3], default='')))
-        file.write("%s\t" % (utilities.clearspaces(row[4], default='')))
-        file.write("%s\t" % (utilities.clearspaces(row[5], default='')))
-        file.write("%s\t" % (utilities.clearspaces(row[6], default='')))
-        file.write("%s\t" % (utilities.clearspaces(row[7], default='')))
-        file.write("%s\t" % (row[8]))
-        file.write("%s\t" % (row[9]))
-        file.write("%s\t" % (row[10]))
-        file.write("%s\t" % (utilities.clearspaces(row[11], default='')))
-        file.write("%s\t" % (row[12]))
-        file.write('\n')
-        file.flush()
-    file.close()
-
-locus='rs3663871'
-inbredsetid=1
-bxd_probesets_locus(locus=locus, inbredsetid=inbredsetid)