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author | Lei Yan | 2014-02-03 12:28:08 -0600 |
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committer | Lei Yan | 2014-02-03 12:28:08 -0600 |
commit | b462fae9df948dbf35232a764d61fbf10c930e82 (patch) | |
tree | abadc34dc66b7fdf53adba9b6505ea327ba2a71f /wqflask/maintenance/dataset/probesets.py | |
parent | c1bd0f562b5249b9a6911e3873dad8dd853aaab7 (diff) | |
download | genenetwork2-b462fae9df948dbf35232a764d61fbf10c930e82.tar.gz |
On branch master
Diffstat (limited to 'wqflask/maintenance/dataset/probesets.py')
-rw-r--r-- | wqflask/maintenance/dataset/probesets.py | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/wqflask/maintenance/dataset/probesets.py b/wqflask/maintenance/dataset/probesets.py new file mode 100644 index 00000000..7fa65786 --- /dev/null +++ b/wqflask/maintenance/dataset/probesets.py @@ -0,0 +1,45 @@ +import sys +sys.path.append('.') +sys.path.append('..') + +from utilities import db + +def fetch_probesetxref(probesetfreezeid): + cursor = db.get_cursor() + sql = """ + SELECT ProbeSetXRef.`ProbeSetId`, ProbeSetXRef.`DataId` + FROM ProbeSetXRef + WHERE ProbeSetXRef.`ProbeSetFreezeId`=%s + """ + cursor.execute(sql, (probesetfreezeid)) + return cursor.fetchall() + +def fetch_probeset(probesetid): + cursor = db.get_cursor() + sql = """ + SELECT * + FROM ProbeSet + WHERE ProbeSet.`Id`=%s + """ + cursor.execute(sql, (probesetid)) + return cursor.fetchone() + +def fetch_probesetdata(probesetdataid): + cursor = db.get_cursor() + sql = """ + SELECT Strain.`Id`, Strain.`Name`, ProbeSetData.`value` + FROM ProbeSetData, Strain + WHERE ProbeSetData.`Id`=%s + AND ProbeSetData.`StrainId`=Strain.`Id`; + """ + cursor.execute(sql, (probesetdataid)) + return cursor.fetchall() + +results = fetch_probesetxref(112) +for row in results: + print row + probesetid = row[0] + probesetdataid = row[1] + print fetch_probeset(probesetid) + print fetch_probesetdata(probesetdataid) + break
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