Merge branch 'testing' into bug/fix_rqtl_covariates

1 files changed, 8 insertions, 5 deletions

diff --git a/wqflask/db/webqtlDatabaseFunction.py b/wqflask/db/webqtlDatabaseFunction.py
index 2805febd..29112949 100644
--- a/wqflask/db/webqtlDatabaseFunction.py
+++ b/wqflask/db/webqtlDatabaseFunction.py
@@ -24,24 +24,27 @@ from db.call import fetch1
 from utility.tools import USE_GN_SERVER
 
 from utility.logger import getLogger
-logger = getLogger(__name__ )
+logger = getLogger(__name__)
 
 ###########################################################################
-#output: cursor instance
-#function: connect to database and return cursor instance
+# output: cursor instance
+# function: connect to database and return cursor instance
 ###########################################################################
 
+
 def retrieve_species(group):
     """Get the species of a group (e.g. returns string "mouse" on "BXD"
 
     """
-    result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (group), "/cross/"+group+".json", lambda r: (r["species"],))[0]
+    result = fetch1("select Species.Name from Species, InbredSet where InbredSet.Name = '%s' and InbredSet.SpeciesId = Species.Id" % (
+        group), "/cross/" + group + ".json", lambda r: (r["species"],))[0]
     logger.debug("retrieve_species result:", result)
     return result
 
 
 def retrieve_species_id(group):
 
-    result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (group), "/cross/"+group+".json", lambda r: (r["species_id"],))[0]
+    result = fetch1("select SpeciesId from InbredSet where Name = '%s'" % (
+        group), "/cross/" + group + ".json", lambda r: (r["species_id"],))[0]
     logger.debug("retrieve_species_id result:", result)
     return result