Added dataSharing to flask directory

1 files changed, 98 insertions, 0 deletions

diff --git a/wqflask/dataSharing/SharingInfo.py b/wqflask/dataSharing/SharingInfo.py
new file mode 100755
index 00000000..10abcefa
--- /dev/null
+++ b/wqflask/dataSharing/SharingInfo.py
@@ -0,0 +1,98 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+import httplib
+
+from dbFunction import webqtlDatabaseFunction
+import SharingBody
+
+
+#########################################
+#      Sharing Info
+#########################################
+class SharingInfo:
+
+		def __init__(self, GN_AccessionId, InfoPageName):
+				self.GN_AccessionId = GN_AccessionId
+				self.InfoPageName = InfoPageName
+
+		def getInfo(self):
+				cursor = webqtlDatabaseFunction.getCursor()
+				if (not cursor):
+						return
+				sql = "select Id, GEO_Series, Status, Title, Organism, Experiment_Type, Summary, Overall_Design, Contributor, Citation, Submission_Date, Contact_Name, Emails, Phone, URL, Organization_Name, Department, Laboratory, Street, City, State, ZIP, Country, Platforms, Samples, Species, Normalization, InbredSet, InfoPageName, DB_Name, Organism_Id, InfoPageTitle, GN_AccesionId, Tissue, AuthorizedUsers, About_Cases, About_Tissue, About_Download, About_Array_Platform, About_Data_Values_Processing, Data_Source_Acknowledge, Progreso from InfoFiles where "
+				if(self.GN_AccessionId):
+						sql += "GN_AccesionId = %s"
+						cursor.execute(sql, self.GN_AccessionId)
+				elif (self.InfoPageName):
+						sql += "InfoPageName = %s"
+						cursor.execute(sql, self.InfoPageName)
+				else:
+						raise 'No correct parameter found'
+				info = cursor.fetchone()
+				# fetch datasets file list
+				try:
+					conn = httplib.HTTPConnection("atlas.uthsc.edu")
+					conn.request("GET", "/scandatasets.php?GN_AccesionId=%s" % (info[32]))
+					response = conn.getresponse()
+					data = response.read()
+					filelist = data.split()
+					conn.close()
+				except Exception:
+					filelist = []
+				return info, filelist
+				
+		def getBody(self, infoupdate=""):
+				info, filelist = self.getInfo()
+				if filelist:
+					htmlfilelist = '<ul style="line-height:160%;">\n'
+					for i in range(len(filelist)):
+							if i%2==0:
+									filename = filelist[i]
+									filesize = filelist[i+1]
+									htmlfilelist += "<li>"
+									htmlfilelist += '<a href="ftp://atlas.uthsc.edu/users/shared/Genenetwork/GN%s/%s">%s</a>' % (self.GN_AccessionId, filename, filename)
+									htmlfilelist += '&nbsp;&nbsp;&nbsp;'
+									#r=re.compile(r'(?<=\d)(?=(\d\d\d)+(?!\d))')
+									#htmlfilelist += '[%s&nbsp;B]' % r.sub(r',',filesize)
+									if 12<len(filesize):
+										filesize=filesize[0:-12]
+										filesize += ' T'
+									elif 9<len(filesize):
+										filesize=filesize[0:-9]
+										filesize += ' G'
+									elif 6<len(filesize):
+										filesize=filesize[0:-6]
+										filesize += ' M'
+									elif 3<len(filesize):
+										filesize=filesize[0:-3]
+										filesize += ' K'
+									htmlfilelist += '[%sB]' % filesize
+									htmlfilelist += "</li>\n"
+					htmlfilelist += "</ul>"
+				else:
+					htmlfilelist = "Data sets are not available or are not public yet."
+				return SharingBody.sharinginfo_body_string % (info[31], info[32], infoupdate, info[32], info[1], info[3], info[30], info[4], info[27], info[33], info[2], info[23], info[26], info[11], info[15], info[16], info[18], info[19], info[20], info[21], info[22], info[13], info[12], info[14], info[14], htmlfilelist, info[6], info[35], info[36], info[37], info[38], info[39], info[40], info[5], info[7], info[8], info[9], info[10], info[17], info[24])