diff options
author | zsloan | 2020-10-02 14:04:21 -0500 |
---|---|---|
committer | GitHub | 2020-10-02 14:04:21 -0500 |
commit | 497953c86e9359bc229c7e449c1ff17313dd25bb (patch) | |
tree | 08050a3761191935b5111bd97f935cd0af0d5ae7 /wqflask/base/data_set.py | |
parent | 5a91ed3bce93934a224d8fbbb7053a1980dd216c (diff) | |
parent | 832ebc46a0e7a6f7c3faef5eb36f1104a66fd626 (diff) | |
download | genenetwork2-497953c86e9359bc229c7e449c1ff17313dd25bb.tar.gz |
Merge pull request #450 from zsloan/corr_matrix_error_fix
Corr matrix error fix
Diffstat (limited to 'wqflask/base/data_set.py')
-rw-r--r-- | wqflask/base/data_set.py | 34 |
1 files changed, 0 insertions, 34 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index afffe780..e0ef559c 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -1173,40 +1173,6 @@ class TempDataSet(DataSet): self.fullname = 'Temporary Storage' self.shortname = 'Temp' - @staticmethod - def handle_pca(desc): - if 'PCA' in desc: - # Todo: Modernize below lines - desc = desc[desc.rindex(':')+1:].strip() - else: - desc = desc[:desc.index('entered')].strip() - return desc - - def get_desc(self): - query = 'SELECT description FROM Temp WHERE Name=%s' % self.name - logger.sql(query) - g.db.execute(query) - desc = g.db.fetchone()[0] - desc = self.handle_pca(desc) - return desc - - def retrieve_sample_data(self, trait): - query = """ - SELECT - Strain.Name, TempData.value, TempData.SE, TempData.NStrain, TempData.Id - FROM - TempData, Temp, Strain - WHERE - TempData.StrainId = Strain.Id AND - TempData.Id = Temp.DataId AND - Temp.name = '%s' - Order BY - Strain.Name - """ % escape(trait.name) - - logger.sql(query) - results = g.db.execute(query).fetchall() - def geno_mrna_confidentiality(ob): dataset_table = ob.type + "Freeze" |