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author | Frederick Muriuki Muriithi | 2022-09-12 06:45:59 +0300 |
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committer | Frederick Muriuki Muriithi | 2022-09-12 06:45:59 +0300 |
commit | 18f4682a27630bd81eb0b1514476c2cf0f663a63 (patch) | |
tree | 38693342340285329cc1d8bdd2d9c9c4a20982d3 /wqflask/base/data_set.py | |
parent | 228a5545adb47fee0de22e55536ee612aab9be66 (diff) | |
download | genenetwork2-18f4682a27630bd81eb0b1514476c2cf0f663a63.tar.gz |
Check db resultset before indexing into it
The assumption that the resultset will never be empty was leading to a
lot of errors.
Diffstat (limited to 'wqflask/base/data_set.py')
-rw-r--r-- | wqflask/base/data_set.py | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index dda5e8f9..47c03b06 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -328,8 +328,11 @@ class DatasetGroup: "InbredSet.InbredSetCode " "FROM InbredSet WHERE Name = %s", (dataset.name,)) - (self.name, self.id, - self.genetic_type, self.code) = cursor.fetchone() + results = cursor.fetchone() + if results: + (self.name, self.id, self.genetic_type, self.code) = results + else: + self.name = name or dataset.name if self.name == 'BXD300': self.name = "BXD" @@ -353,7 +356,9 @@ class DatasetGroup: "SELECT MappingMethodId FROM " "InbredSet WHERE Name= %s", (self.name,)) - mapping_id = cursor.fetchone()[0] + results = cursor.fetchone() + if results and results[0]: + mapping_id = results[0] if mapping_id == "1": mapping_names = ["GEMMA", "QTLReaper", "R/qtl"] elif mapping_id == "2": @@ -1227,8 +1232,8 @@ def geno_mrna_confidentiality(ob): f"AuthorisedUsers FROM {ob.type}Freeze WHERE Name = %s", (ob.name,) ) - result = cursor.fetchall()[0] - if result: + result = cursor.fetchall() + if len(result) > 0 and result[0]: return True |