Added script to quantile normalize a data set and enter its normalized sample data into ElasticSearch

Added option to replace trait page sample/strain values with normalized ones

Began editing Lei's scatterplot code

Changed elasticsearch_tools' get_elasticsearch_connection so that it can also be used for purposes other than user authentication (by adding a "for_user" parameter)

1 files changed, 0 insertions, 22 deletions

diff --git a/wqflask/base/anon_collection.py b/wqflask/base/anon_collection.py
deleted file mode 100644
index dd1aa27f..00000000
--- a/wqflask/base/anon_collection.py
+++ /dev/null
@@ -1,22 +0,0 @@
-class AnonCollection(TraitCollection):

-    

-    def __init__(self, anon_id):

-        self.anon_id = anon_id

-        self.collection_members = Redis.smembers(self.anon_id)

-        print("self.collection_members is:", self.collection_members)

-        self.num_members = len(self.collection_members)

-        

-

-    @app.route("/collections/remove", methods=('POST',))

-    def remove_traits(traits_to_remove):

-        print("traits_to_remove:", traits_to_remove)

-        for trait in traits_to_remove:

-            Redis.srem(self.anon_id, trait)

-

-        members_now = self.collection_members - traits_to_remove

-        print("members_now:", members_now)

-        print("Went from {} to {} members in set.".format(len(self.collection_members), len(members_now)))

-

-        # We need to return something so we'll return this...maybe in the future

-        # we can use it to check the results

-        return str(len(members_now))