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author | zsloan | 2021-10-18 17:50:26 +0000 |
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committer | zsloan | 2021-10-18 17:50:26 +0000 |
commit | e36eaf0003a598bc5aa688803dd1b36c24a4c051 (patch) | |
tree | a59b7dadf02241575eb0774f97c6048e2425c053 /webtests | |
parent | bd421438f1f0b4de913fa40cd49cfcda27e6b16f (diff) | |
parent | 04f3d13aceeaec2e52b94037d59f08ed6dc6a8bb (diff) | |
download | genenetwork2-e36eaf0003a598bc5aa688803dd1b36c24a4c051.tar.gz |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into feature/remove_trait_creation_from_search
Diffstat (limited to 'webtests')
-rw-r--r-- | webtests/browser_run.py | 72 | ||||
-rw-r--r-- | webtests/chromedriver | bin | 17741222 -> 0 bytes | |||
-rw-r--r-- | webtests/correlation_matrix_test.py | 70 | ||||
-rw-r--r-- | webtests/correlation_test.py | 49 | ||||
-rw-r--r-- | webtests/libpeerconnection.log | 0 | ||||
-rw-r--r-- | webtests/marker_regression_test.py | 53 | ||||
-rw-r--r-- | webtests/show_trait_js_test.py | 40 | ||||
-rw-r--r-- | webtests/test_runner.py | 26 |
8 files changed, 0 insertions, 310 deletions
diff --git a/webtests/browser_run.py b/webtests/browser_run.py deleted file mode 100644 index 7ee540b7..00000000 --- a/webtests/browser_run.py +++ /dev/null @@ -1,72 +0,0 @@ -__all__ = ('sleep', 'testmod', 'test') - -from doctest import testmod - -from time import sleep - -import selenium -from selenium import webdriver -from selenium.common.exceptions import NoSuchElementException, ElementNotVisibleException -from selenium.webdriver.common.keys import Keys - -class Test(object): - def __init__(self): - #self.browser = webdriver.Chrome('/home/gn2/gn2/webtests/chromedriver') - self.browser = webdriver.Firefox() - - def get(self, url): - self.browser.get(url) - sleep(5) - self.title() - - def click(self, xpath_selector): - el = self.browser.find_element_by_xpath(xpath_selector) - if el.text: - text = el.text.strip() - elif el.get_attribute("value"): - text = el.get_attribute("value").strip() - else: - text = "Notext" - el.click() - print("clicked:", text) - sleep(2) - - def click_option(self, xpath_selector, option_text): - el = self.browser.find_element_by_xpath(xpath_selector) - for option in el.find_elements_by_tag_name('option'): - if option.text == option_text: - option.click() # select() in earlier versions of webdriver - break - sleep(2) - - def enter_text(self, xpath_selector, text): - el = self.browser.find_element_by_xpath(xpath_selector) - sleep(10) - el.send_keys(text) - sleep(5) - # Just in case things get mangled by JavaScript, etc. we print the text for testing - self.get_text(xpath_selector) - - def get_text(self, xpath_selector): - el = self.browser.find_element_by_xpath(xpath_selector) - text = el.text.strip() or el.get_attribute("value").strip() - print("text:", text) - - def get_element_style(self, xpath_selector): - el = self.browser.find_element_by_xpath(xpath_selector) - style = el.get_attribute("style").strip() - print("style:", style) - - def switch_window(self): - self.browser.switch_to_window(self.browser.window_handles[-1]) - sleep(2) - self.title() - sleep(2) - - - def title(self): - print("title:", self.browser.title) - - - -test = Test() diff --git a/webtests/chromedriver b/webtests/chromedriver Binary files differdeleted file mode 100644 index 754eb668..00000000 --- a/webtests/chromedriver +++ /dev/null diff --git a/webtests/correlation_matrix_test.py b/webtests/correlation_matrix_test.py deleted file mode 100644 index 97114890..00000000 --- a/webtests/correlation_matrix_test.py +++ /dev/null @@ -1,70 +0,0 @@ -""" - -Test Correlation matrix - ->>> test.get("http://genenetwork.org/") -title: GeneNetwork - -Choose the type ->>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA') - -Enter the Get Any ->>> test.enter_text('''//*[@id="tfor"]''', 'grin2b') -text: grin2b - -Search ->>> test.click('//*[@id="btsearch"]') -clicked: Search - -Add 1430675_at ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td/input''') -clicked: HC_M2_0606_P::1430675_at - -Add 1442370_at ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td/input''') -clicked: HC_M2_0606_P::1442370_at - -Add 1457003_at ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[4]/td/input''') -clicked: HC_M2_0606_P::1457003_at - -Add 1422223_at ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[5]/td/input''') -clicked: HC_M2_0606_P::1422223_at - ->>> sleep(5) - -Add to collection page ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[1]/td/table/tbody/tr[1]/td[4]/a''') -clicked: Notext - ->>> sleep(5) - -A new window is created, so we switch to it ->>> test.switch_window() -title: BXD Trait Collection - -Select all records ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr/td/table/tbody/tr/td/a/img''') -clicked: Notext - -Click Matrix ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr/td/table/tbody/tr[2]/td/table/tbody/tr/td[2]/a/img''') -clicked: Notext - -Another new window ->>> test.switch_window() -title: Correlation Matrix - -Sleep a bunch because this can take a while ->>> sleep(10) - -Ensure that the correlation between Trait3 (HC_M2_0606_P::1457003_at) and Trait4 (HC_M2_0606_P::1422223_at) is 0.608 ->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/blockquote/table/tbody/tr[5]/td[5]/a/font''') -text: 0.608\n71 - -""" - -from browser_run import * - -testmod() diff --git a/webtests/correlation_test.py b/webtests/correlation_test.py deleted file mode 100644 index 311bb847..00000000 --- a/webtests/correlation_test.py +++ /dev/null @@ -1,49 +0,0 @@ -""" -Test calculate correlations - ->>> test.get("http://genenetwork.org") -title: GeneNetwork - -Choose the type ->>> test.click_option('''//*[@id="tissue"]''', 'Hippocampus mRNA') - -Enter the Get Any ->>> test.enter_text('''//*[@id="tfor"]''', 'ssh') -text: ssh - -Search ->>> test.click('//*[@id="btsearch"]') -clicked: Search - -Choose the first result ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[2]/td[2]/a''') -clicked: 1455854_a_at - -A new window is created, so we switch to it ->>> test.switch_window() -title: Hippocampus M430v2 BXD 06/06 PDNN : 1455854_a_at: Display Trait - -Click on Calculate Correlations ->>> test.click('''//*[@id="title3"]''') -clicked: Calculate Correlations - -Click on Compute ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p[6]/table/tbody/tr/td/div/div/span/table/tbody/tr/td/input[3]''') -clicked: Compute - -Another new window ->>> test.switch_window() -title: Correlation - -Sleep a bunch because this can take a while ->>> sleep(25) - -Ensure the Sample rho is the exepcted 1.000 because it should be the same record ->>> test.get_text('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/table/tbody/tr[2]/td/div/table/tbody/tr[2]/td[9]/a''') -text: 1.000 - -""" - -from browser_run import * - -testmod() diff --git a/webtests/libpeerconnection.log b/webtests/libpeerconnection.log deleted file mode 100644 index e69de29b..00000000 --- a/webtests/libpeerconnection.log +++ /dev/null diff --git a/webtests/marker_regression_test.py b/webtests/marker_regression_test.py deleted file mode 100644 index 9b4a4acb..00000000 --- a/webtests/marker_regression_test.py +++ /dev/null @@ -1,53 +0,0 @@ -""" -Test calculate correlations - ->>> test.get("http://genenetwork.org") -title: GeneNetwork - -Choose the type ->>> test.click_option('''//*[@id="tissue"]''', 'Liver mRNA') - -Enter the Get Any ->>> test.enter_text('''//*[@id="tfor"]''', 'grin2b') -text: grin2b - -Search ->>> test.click('//*[@id="btsearch"]') -clicked: Search - -Choose the second result ->>> test.click('''/html/body/table/tbody/tr[3]/td/table/tbody/tr/td/form/p/table/tbody/tr[3]/td/div/table/tbody/tr[3]/td[2]/a''') -clicked: 1431700_at_A - -A new window is created, so we switch to it ->>> test.switch_window() -title: GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA : 1431700_at_A: Display Trait - -Click on Mapping Tools ->>> test.click('''//*[@id="title4"]''') -clicked: Mapping Tools - -Click on Marker Regression tab ->>> test.click('''//*[@id="mapping_tabs"]/ul/li[2]/a''') -clicked: Marker Regression - -Click on Compute ->>> test.click('''//*[@id="mappingtabs-2"]/span/table/tbody/tr[1]/td/input''') -clicked: Compute - -Another new window ->>> test.switch_window() -title: Genome Association Result - -Sleep a bunch because this can take a while ->>> sleep(60) - -Ensure that the LRS of the top record is the exepcted value ->>> test.get_text('''//*[@id="1"]/td[2]''') -text: 11.511 - -""" - -from browser_run import * - -testmod() diff --git a/webtests/show_trait_js_test.py b/webtests/show_trait_js_test.py deleted file mode 100644 index 34ffd3b7..00000000 --- a/webtests/show_trait_js_test.py +++ /dev/null @@ -1,40 +0,0 @@ -""" -Test if JS is working on the show trait page - ->>> test.get("alexandria.uthsc.edu:89") -title: GeneNetwork - -Choose the species ->>> test.click_option('''//*[@id="species"]''', 'Human') - -Choose the group ->>> test.click_option('''//*[@id="cross"]''', 'Human Brain Transcriptome (Yale/Kavli)') - -Choose the type ->>> test.click_option('''//*[@id="tissue"]''', 'Orbital Prefrontal Cortex mRNA') - -Enter the Get Any ->>> test.enter_text('''//*[@id="tfor"]''', 'shh') -text: shh - -Search ->>> test.click('//*[@id="btsearch"]') -clicked: Search - -Choose the first result ->>> test.click('''//*[@id="KIN_YSM_OFC_0711::3081205"]/td[2]/a''') -clicked: 3081205 - -A new window is created, so we switch to it ->>> test.switch_window() -title: KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile : 3081205: Display Trait - -Check that the Calculate Correlations tab is closed (if javascript isn't working, it will be open) ->>> test.get_element_style('''//*[@id="sectionbody3"]''') -style: display: none; - -""" - -from browser_run import * - -testmod() diff --git a/webtests/test_runner.py b/webtests/test_runner.py deleted file mode 100644 index b5b590a6..00000000 --- a/webtests/test_runner.py +++ /dev/null @@ -1,26 +0,0 @@ -import unittest -import doctest -import glob - -tests = ("correlation_test", - "correlation_matrix_test", - "marker_regression_test", - "show_trait_js_test") - - -def main(): - tests = glob.glob("*_test.py") - - suite = unittest.TestSuite() - - for testname in tests: - test = testname.rsplit(".", 1)[0] - print("Test is:", test) - mod = __import__(test) - suite.addTest(doctest.DocTestSuite(mod)) - - runner = unittest.TextTestRunner() - runner.run(suite) - -if __name__ == '__main__': - main() |