Add all the source codes into the github.

5 files changed, 281 insertions, 0 deletions

diff --git a/web/webqtl/user/__init__.py b/web/webqtl/user/__init__.py
new file mode 100755
index 00000000..e69de29b
--- /dev/null
+++ b/web/webqtl/user/__init__.py
diff --git a/web/webqtl/user/userLogin.py b/web/webqtl/user/userLogin.py
new file mode 100755
index 00000000..145af03e
--- /dev/null
+++ b/web/webqtl/user/userLogin.py
@@ -0,0 +1,84 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+#Xiaodong changed the independancy structure
+
+from htmlgen import HTMLgen2 as HT
+import os
+
+from base.templatePage import templatePage
+from base import webqtlConfig
+from utility import webqtlUtil
+from search import IndexPage
+from base.myCookie import myCookie
+
+class userLogin(templatePage):
+
+	def __init__(self, fd):	
+
+		templatePage.__init__(self, fd)
+
+		if not self.updMysql():
+			return
+
+		try:	
+			user = fd.formdata.getvalue('user').strip()
+			password = fd.formdata.getvalue('password').strip()
+		except:
+			user = password = ''
+
+		if user and password:
+			try:
+				if user == password:
+					raise 'identError'
+				privilege, id, account_name, encrypt_password, grpName = webqtlUtil.authUser(user, password, self.cursor)
+
+				if encrypt_password:
+					self.session_data_changed['user'] = user
+					self.session_data_changed['privilege'] = privilege
+
+					self.cursor.execute("""update User set user_ip=%s,lastlogin=Now() where name=%s""",(fd.remote_ip,user))
+
+					myPage = IndexPage.IndexPage(fd)
+					self.dict['title'] = myPage.dict['title']
+					self.dict['body'] = myPage.dict['body']
+					self.dict['js1'] = myPage.dict['js1']
+					self.dict['js2'] = myPage.dict['js2']
+					return
+				else:
+					result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('You entered wrong user name or password. Please try it again.',color='black'))
+			except 'identError':
+				result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('User name and password are the same, modify you password before login.',color='black'))
+			except:
+				result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('User database is not ready yet. Try again later.',color='black'))
+		else:
+			result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('No user name or password was entered, Please try it again.',color='black'))
+		
+		result.__setattr__("class","subtitle")
+		self.dict['title'] = 'User Login Result'
+		self.dict['body'] = HT.TD(result,colspan=2,height=200,width="100%",bgColor='#eeeeee')
+		LOGOUT = HT.Href(text = "Logout",Class="small", target="_blank",url=os.path.join(webqtlConfig.CGIDIR, webqtlConfig.SCRIPTFILE) + "?FormID=userLogoff")
+		self.dict['login'] = LOGOUT
diff --git a/web/webqtl/user/userLogoff.py b/web/webqtl/user/userLogoff.py
new file mode 100755
index 00000000..203ac69c
--- /dev/null
+++ b/web/webqtl/user/userLogoff.py
@@ -0,0 +1,54 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+#Xiaodong changed the independancy structure
+
+from htmlgen import HTMLgen2 as HT
+
+from base.templatePage import templatePage
+from base.myCookie import myCookie
+
+#########################################
+#      User Logoff Page
+#########################################
+
+class userLogoff(templatePage):
+	def __init__(self, fd):	
+
+		templatePage.__init__(self, fd)
+
+		self.session_data_changed['user'] = 'Guest'
+		self.session_data_changed['privilege'] = 'guest'
+
+		#self.cookie.append(myCookie('user',' ',0))
+		#self.cookie.append(myCookie('password',' ',0))
+		result = HT.Blockquote(HT.Font('Logout Result: ',color='green'),HT.Font('You have been succesfully logged out. ',color='black'))
+		result.__setattr__("class","subtitle")
+		self.dict['title'] = 'User Logoff Result'
+		self.dict['body'] = HT.TD(result,colspan=2,height=200,width="100%",bgColor='#eeeeee')
+		LOGIN = HT.Href(text = "Login",Class="small", target="_blank",url="account.html")
+		self.dict['login'] = LOGIN
+			
diff --git a/web/webqtl/user/userPasswd.py b/web/webqtl/user/userPasswd.py
new file mode 100755
index 00000000..58c9bbc9
--- /dev/null
+++ b/web/webqtl/user/userPasswd.py
@@ -0,0 +1,73 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+#Xiaodong changed the independancy structure
+
+from htmlgen import HTMLgen2 as HT
+
+from base.templatePage import templatePage
+from utility import webqtlUtil
+
+
+#########################################
+#      User Password Page
+#########################################
+
+class userPasswd(templatePage):
+	def __init__(self, fd):	
+
+		templatePage.__init__(self, fd)
+
+		if not self.updMysql():
+			return
+
+		try:	
+			user = fd.formdata.getvalue('user')
+			password = fd.formdata.getvalue('password')
+			newpassword = fd.formdata.getvalue('newpassword')
+			retypepassword = fd.formdata.getvalue('retypepassword')
+		except:
+			user = ''
+		
+		if newpassword != retypepassword:
+			result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('The new passwords you just entered are inconsistent. Please try it again',color='black'))
+		elif user and password and newpassword:
+			try:
+				encrypt_password = webqtlUtil.authUser(user,password,self.cursor)[3]
+				if encrypt_password:
+					self.cursor.execute("""update User set password=SHA(%s) where name=%s""",(newpassword,user))
+					result = HT.Blockquote(HT.Font('Change Result: ',color='green'),HT.Font('You have succesfully changed your password. You may continue to use WebQTL.',color='black'))
+				else:
+					result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('You entered wrong user name or password. Please try it again.',color='black'))
+			except:
+				result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('User database is not ready yet. Try again later.',color='black'))
+		else:
+			result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('No user name or password or new password was entered, Please try it again.',color='black'))
+		
+		result.__setattr__("class","subtitle")
+		self.dict['title'] = 'Change Password Result'
+		self.dict['body'] = HT.TD(result,colspan=2,height=200,width="100%",bgColor='#eeeeee')
+
diff --git a/web/webqtl/user/userPasswdPage.py b/web/webqtl/user/userPasswdPage.py
new file mode 100755
index 00000000..2c9135f1
--- /dev/null
+++ b/web/webqtl/user/userPasswdPage.py
@@ -0,0 +1,70 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+#Xiaodong changed the independancy structure
+
+from htmlgen import HTMLgen2 as HT
+
+from base.templatePage import templatePage
+from utility import webqtlUtil
+
+
+#########################################
+#      User Password Page
+#########################################
+
+class userPasswdPage(templatePage):
+	def __init__(self, fd):	
+		templatePage.__init__(self)
+		if not self.updMysql():
+			return
+		try:	
+			user = fd.formdata.getvalue('user')
+			password = fd.formdata.getvalue('password')
+			newpassword = fd.formdata.getvalue('newpassword')
+			retypepassword = fd.formdata.getvalue('retypepassword')
+		except:
+			user = ''
+		
+		if newpassword != retypepassword:
+			result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('The new passwords you just entered are inconsistent. Please try it again',color='black'))
+		elif user and password and newpassword:
+			try:
+				encrypt_password = webqtlUtil.authUser(user,password,self.cursor)[3]
+				if encrypt_password:
+					self.cursor.execute("""update User set password=SHA(%s) where name=%s""",(newpassword,user))
+					result = HT.Blockquote(HT.Font('Change Result: ',color='green'),HT.Font('You have succesfully changed your password. You may continue to use WebQTL.',color='black'))
+				else:
+					result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('You entered wrong user name or password. Please try it again.',color='black'))
+			except:
+				result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('User database is not ready yet. Try again later.',color='black'))
+		else:
+			result = HT.Blockquote(HT.Font('Error: ',color='red'),HT.Font('No user name or password or new password was entered, Please try it again.',color='black'))
+		
+		result.__setattr__("class","subtitle")
+		self.dict['title'] = 'Change Password Result'
+		self.dict['body'] = HT.TD(result,colspan=2,height=200,width="100%",bgColor='#eeeeee')
+