Add all the source codes into the github.

1 files changed, 71 insertions, 0 deletions

diff --git a/web/webqtl/snpBrowser/snpBrowserUtils.py b/web/webqtl/snpBrowser/snpBrowserUtils.py
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+++ b/web/webqtl/snpBrowser/snpBrowserUtils.py
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+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+ # The columns that are to be displayed are chosen at the line about 1000, with categories["info"]; this initializes the columns and assigns a 'variable_name' :and: "Display Name"
+columnNames = {
+	# The following are for ALL VARIANTS
+	        'variant':"Variant Type",
+	        'snpname':"SNP ID", # SnpAll.Id
+		'chromosome':"Chromosome",
+		'mb':"Mb",
+		'sourceName':"Source",
+		'sourceCreated':"Source Created",
+		'sourceAdded':"Source Added",
+		'sourceId':"Source", 
+		'gene':'Gene',
+	# The following are for SNP VARIANTS	
+		'source':'Source', 
+		'chr':'Chr', 
+		'snpId':"Submitter ID", #SnpAll.SnpName
+		'mbCelera':"Mb (CDS)",
+		'rs':"ID",
+		'function':"Function",
+		'type':"Type",
+		'majorCount':"Major Count",
+		'minorCount':"Minor Count",
+		'missingCount':"Missing Count",
+		'class':"Class",
+		'flanking5':"Flanking 5'",
+		'flanking3':"Flanking 3'",
+		'blatScore':"BLAT Score",
+		'majorAllele':"Major Allele",
+		'minorAllele':"Minor Allele",
+		'shortAlleles':'Reference',
+		"Proximal_Gap_bp":"Gap",
+		'domain':'Domain',
+		'ncbi':'NCBI Annotation',
+		'conservation':'ConScore',
+       # The following are for INDEL VARIANTS
+		'indelId':"ID", # Indel.Id Indel
+		'indelName':"ID", # Indel.Name
+		'indelType':"Type", # Indel.Type
+		'indelChr':"InDel Chr", # Indel.Chromosome
+		'indelMb_s':"Mb Start", # Indel.Mb_start
+		'indelMb_e':"Mb End", # IndelAll.Mb_end
+		'indelStrand':"Strand", # IndelAll.Strand
+		'indelSize':"Size", # IndelAll.Size
+		'indelSeq':"Sequence", # IndelAll.Sequence
+}
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