Add all the source codes into the github.

1 files changed, 92 insertions, 0 deletions

diff --git a/web/webqtl/collection/ImportSelectionPage.py b/web/webqtl/collection/ImportSelectionPage.py
new file mode 100755
index 00000000..0702509b
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+++ b/web/webqtl/collection/ImportSelectionPage.py
@@ -0,0 +1,92 @@
+# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU Affero General Public License
+# as published by the Free Software Foundation, either version 3 of the
+# License, or (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+# See the GNU Affero General Public License for more details.
+#
+# This program is available from Source Forge: at GeneNetwork Project
+# (sourceforge.net/projects/genenetwork/).
+#
+# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
+# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+#
+#
+#
+# This module is used by GeneNetwork project (www.genenetwork.org)
+#
+# Created by GeneNetwork Core Team 2010/08/10
+#
+# Last updated by GeneNetwork Core Team 2010/10/20
+
+#ImportSelectionPage.py
+
+import string
+
+from base.templatePage import templatePage
+from AddToSelectionPage import AddToSelectionPage
+				
+
+#########################################
+#     Import Selection Page
+#########################################
+class ImportSelectionPage(AddToSelectionPage):
+
+	def __init__(self, fd):
+
+		templatePage.__init__(self, fd)
+
+		if not self.openMysql():
+			return
+
+		if not fd.genotype:
+			fd.readGenotype()
+		
+		self.importFile = fd.formdata.getvalue('importfile')
+		if not self.importFile:
+			templatePage.__init__(self, fd)
+			heading = 'Import Collection'
+			detail = ['The file you choose to import from doesn\'t exist.']
+			self.error(heading=heading,detail=detail)
+			return
+		self.importFile = string.split(self.importFile, '\n')
+		
+		RISetLocate = 0
+		self.searchResult = []
+		for line in self.importFile:
+			if line and line[0] != '#':
+				if not RISetLocate:
+					RISetLocate = line
+					if RISetLocate != fd.RISet:
+						templatePage.__init__(self, fd)
+						heading = 'Import Collection'
+						detail = ['The file you choose to import from doesn\'t contain %s selection.' % fd.RISet]
+						self.error(heading=heading,detail=detail)
+						return
+				else:
+					self.searchResult.append(line)
+		
+		if not self.searchResult:
+			templatePage.__init__(self, fd)
+			heading = 'Import Collection'
+			detail = ['The file you choose to import from is empty.']
+			self.error(heading=heading,detail=detail)
+			return
+				
+		self.importMethod = fd.formdata.getvalue('importmethod')
+		
+		if self.importMethod == 'replace':
+			checkPreSelection = 0
+		else:
+			checkPreSelection = 1
+			
+		if self.genSelection(fd=fd, checkPreSelection = checkPreSelection):
+			self.writeHTML(fd)
+	
+
+