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| author | Arthur Centeno | 2021-10-25 21:04:23 +0000 |
|---|---|---|
| committer | Arthur Centeno | 2021-10-25 21:04:23 +0000 |
| commit | 499a80f138030c4de1629c043c8f9401a99894ea (patch) | |
| tree | 449dcae965d13f966fb6d52625fbc86661c8c6a0 /scripts/maintenance/QTL_Reaper_v6.py | |
| parent | 6151faa9ea67af4bf4ea95fb681a9dc4319474b6 (diff) | |
| parent | 700802303e5e8221a9d591ba985d6607aa61e1ce (diff) | |
| download | genenetwork2-499a80f138030c4de1629c043c8f9401a99894ea.tar.gz | |
Merge github.com:genenetwork/genenetwork2 into acenteno
Diffstat (limited to 'scripts/maintenance/QTL_Reaper_v6.py')
| -rwxr-xr-x | scripts/maintenance/QTL_Reaper_v6.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/scripts/maintenance/QTL_Reaper_v6.py b/scripts/maintenance/QTL_Reaper_v6.py index e50dbd40..35f2d1a1 100755 --- a/scripts/maintenance/QTL_Reaper_v6.py +++ b/scripts/maintenance/QTL_Reaper_v6.py @@ -7,7 +7,7 @@ import reaper import MySQLdb import time -con = MySQLdb.Connect(db='db_webqtl',user='username',passwd='', host="localhost") +con = MySQLdb.Connect(db='db_webqtl', user='username', passwd='', host="localhost") cursor = con.cursor() genotypeDir = '/gnshare/gn/web/genotypes/' @@ -23,7 +23,7 @@ for item in results: ProbeSetFreezeIds=sys.argv[1:] if ProbeSetFreezeIds: #####convert the Ids to integer - ProbeSetFreezeIds=map(int, ProbeSetFreezeIds) + ProbeSetFreezeIds=list(map(int, ProbeSetFreezeIds)) else: #####get all of the dataset that need be updated @@ -53,7 +53,7 @@ for ProbeSetFreezeId in ProbeSetFreezeIds: #if InbredSetId==12: # InbredSetId=2 - print ProbeSetFreezeId, InbredSets[InbredSetId] + print((ProbeSetFreezeId, InbredSets[InbredSetId])) genotype_1.read(InbredSets[InbredSetId]) locuses = [] @@ -102,7 +102,7 @@ for ProbeSetFreezeId in ProbeSetFreezeIds: kj += 1 if kj%1000==0: - print ProbeSetFreezeId, InbredSets[InbredSetId],kj + print((ProbeSetFreezeId, InbredSets[InbredSetId], kj)) - print ProbeSetFreezeIds + print(ProbeSetFreezeIds) |