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| author | zsloan | 2020-10-29 14:35:09 -0500 |
|---|---|---|
| committer | zsloan | 2020-10-29 14:35:09 -0500 |
| commit | 7c1c9e2a519ba662e9f293eea73eb7922b2160e4 (patch) | |
| tree | f6d4db465d338c1433bbb126e911062a6c31748b /scripts/maintenance/QTL_Reaper_v6.py | |
| parent | 5a1f69aa85809768577069ae63d92c9ef6aecc02 (diff) | |
| parent | 6e6911b466c2727b16a190d8b714f55d7842d7e2 (diff) | |
| download | genenetwork2-7c1c9e2a519ba662e9f293eea73eb7922b2160e4.tar.gz | |
Merge branch 'testing' of github.com:genenetwork/genenetwork2 into reaper_bootstrap_fix
Diffstat (limited to 'scripts/maintenance/QTL_Reaper_v6.py')
| -rwxr-xr-x | scripts/maintenance/QTL_Reaper_v6.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/scripts/maintenance/QTL_Reaper_v6.py b/scripts/maintenance/QTL_Reaper_v6.py index e50dbd40..35f2d1a1 100755 --- a/scripts/maintenance/QTL_Reaper_v6.py +++ b/scripts/maintenance/QTL_Reaper_v6.py @@ -7,7 +7,7 @@ import reaper import MySQLdb import time -con = MySQLdb.Connect(db='db_webqtl',user='username',passwd='', host="localhost") +con = MySQLdb.Connect(db='db_webqtl', user='username', passwd='', host="localhost") cursor = con.cursor() genotypeDir = '/gnshare/gn/web/genotypes/' @@ -23,7 +23,7 @@ for item in results: ProbeSetFreezeIds=sys.argv[1:] if ProbeSetFreezeIds: #####convert the Ids to integer - ProbeSetFreezeIds=map(int, ProbeSetFreezeIds) + ProbeSetFreezeIds=list(map(int, ProbeSetFreezeIds)) else: #####get all of the dataset that need be updated @@ -53,7 +53,7 @@ for ProbeSetFreezeId in ProbeSetFreezeIds: #if InbredSetId==12: # InbredSetId=2 - print ProbeSetFreezeId, InbredSets[InbredSetId] + print((ProbeSetFreezeId, InbredSets[InbredSetId])) genotype_1.read(InbredSets[InbredSetId]) locuses = [] @@ -102,7 +102,7 @@ for ProbeSetFreezeId in ProbeSetFreezeIds: kj += 1 if kj%1000==0: - print ProbeSetFreezeId, InbredSets[InbredSetId],kj + print((ProbeSetFreezeId, InbredSets[InbredSetId], kj)) - print ProbeSetFreezeIds + print(ProbeSetFreezeIds) |