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author | zsloan | 2017-05-22 15:57:33 +0000 |
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committer | zsloan | 2017-05-22 15:57:33 +0000 |
commit | e32d5e9b1966b48e5e1c667d7194defe798a9517 (patch) | |
tree | ccfbc293d95f691db2917c7ad5a763dc69f5bb43 /doc/development.org | |
parent | 1517b200476380179e5c53c141a874348e28dd87 (diff) | |
parent | 9d4cb56608ca5de3495ede9149443e772a25d706 (diff) | |
download | genenetwork2-e32d5e9b1966b48e5e1c667d7194defe798a9517.tar.gz |
Merge branch 'master' of github.com:genenetwork/genenetwork2 into development
Diffstat (limited to 'doc/development.org')
-rw-r--r-- | doc/development.org | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/doc/development.org b/doc/development.org new file mode 100644 index 00000000..bbb6084f --- /dev/null +++ b/doc/development.org @@ -0,0 +1,23 @@ +* Development + +After cloning the git source tree you can run the contained GN2 using +an existing GN2_PROFILE, i.e., use a profile that was create to run a +binary installation of GN2. This profile may be found by typing + +: which genenetwork2 +: /home/wrk/opt/gn-latest-guix/bin/genenetwork2 + +An example of running the development version would be + +: env GN2_PROFILE=/home/wrk/opt/gn-latest-guix ./bin/genenetwork2 + +Profiles are stored in /gnu/store, so you may pick one up there + +: readlink -f $(dirname $(dirname `which genenetwork2`)) +: /gnu/store/dvckpaw770b00l6rv4ijql8wrk11iypv-profile + +and use that instead. + +Note that the genenetwork2 script sets up the environment for running +the webserver. This includes path to R modules and python modules. These +are output on startup. To make sure there is no environment pollution you can |