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| author | zsloan | 2022-07-27 18:12:26 +0000 |
|---|---|---|
| committer | zsloan | 2022-07-27 18:12:37 +0000 |
| commit | a08d91a234f700043d1d31164c7e2bacda4729da (patch) | |
| tree | f8323dd89ba5426740e638fba2b9344e567b053e | |
| parent | 93f866cb6b3ad0011c7fb8f6a26901f5b732e2a3 (diff) | |
| download | genenetwork2-a08d91a234f700043d1d31164c7e2bacda4729da.tar.gz | |
Disable PCA when fewer than 3 traits
| -rw-r--r-- | wqflask/wqflask/correlation_matrix/show_corr_matrix.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py index cf37b9e9..17c174b1 100644 --- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py +++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py @@ -77,7 +77,7 @@ class CorrelationMatrix: self.sample_data.append(this_trait_vals) # Shouldn't do PCA if there are more traits than observations/samples - if len(this_trait_vals) < len(self.trait_list): + if len(this_trait_vals) < len(self.trait_list) or len(self.trait_list) < 3: self.do_PCA = False # ZS: Variable set to the lowest overlapping samples in order to notify user, or 8, whichever is lower (since 8 is when we want to display warning) @@ -85,6 +85,7 @@ class CorrelationMatrix: self.corr_results = [] self.pca_corr_results = [] + self.scree_data = [] self.shared_samples_list = self.all_sample_list for trait_db in self.trait_list: this_trait = trait_db[0] |