From 02311e25a43d9a9443149a0402279f0f8a48ce50 Mon Sep 17 00:00:00 2001
From: Hao Chen
Date: Wed, 8 May 2019 15:58:09 -0500
Subject: improved ontology

---
 server.py | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)
 mode change 100644 => 100755 server.py

(limited to 'server.py')

diff --git a/server.py b/server.py
old mode 100644
new mode 100755
index 4eaf911..c9009d0
--- a/server.py
+++ b/server.py
@@ -1,3 +1,4 @@
+#!/bin/env  python3
 from flask import Flask, render_template, request, redirect
 import simplejson as json
 from ratspub import *
@@ -9,10 +10,6 @@ app.config['SECRET_KEY'] = '#DtfrL98G5t1dC*4'
 def root():
     return render_template('index.html')
 
-@app.route("/home")
-def home():
-    return render_template('index.html')
-
 @app.route("/search")
 def search():
     global all_sentences 
@@ -33,6 +30,9 @@ def search():
         e2=generate_edges(sent2)
         edges+=e0+e1+e2
         all_sentences+=sent0+sent1+sent2
+    f=open("all_sentences.tab","w")
+    f.write(all_sentences)
+    f.close()
     return render_template('cytoscape.html', elements=nodes+edges)
 
 @app.route("/sentences")
@@ -40,14 +40,14 @@ def sentences():
     edge=request.args.get('edgeID')
     (gene0, cat0)=edge.split("|")
     print (gene0 + cat0)
-    out=str()
+    out="<h3>"+gene0 + " and " + cat0  + "</h3>\n"
     for sent in all_sentences.split("\n"):
         #print (sent) 
         if len(sent.strip())!=0:
            (gene,nouse,cat, pmid, text)=sent.split("\t") 
            if (gene == gene0 and cat == cat0) :
                out+= "<li> "+ text + " <a href=\"https://www.ncbi.nlm.nih.gov/pubmed/?term=" + pmid +"\" target=_new>PMID:"+pmid+"<br></a>"
-    return render_template('sentences.html', sentences=out)
+    return render_template('sentences.html', sentences=out+"<p>")
 
 if __name__ == '__main__':
     app.run(debug=True)
-- 
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