From bccb6e719ce4f423eb9ebc59678d8535424119e8 Mon Sep 17 00:00:00 2001 From: Hao Chen Date: Mon, 19 Dec 2022 04:53:33 -0600 Subject: add social to keywords and update GWAS catalog --- ratspub_keywords.py | 51 +++++++++++++++++++++++++++++---------------------- 1 file changed, 29 insertions(+), 22 deletions(-) (limited to 'ratspub_keywords.py') diff --git a/ratspub_keywords.py b/ratspub_keywords.py index a7a5424..d3836e0 100644 --- a/ratspub_keywords.py +++ b/ratspub_keywords.py @@ -1,43 +1,50 @@ -addiction_d={'addiction':'addiction|addictive|compulsive|drug-abuse|escalation|punishment', -'aversion':'aversion|aversive|conditioned-taste-aversion|CTA', +addiction_d={'addiction':'addiction|addictive|compulsive|drug abuse|escalation|punishment', +'aversion':'aversion|aversive|conditioned taste aversion|CTA', 'dependence':'dependence', 'intoxication':'binge|intoxication', -'relapse':'craving|drug-seeking|reinstatement|relapse|seeking', -'reward':'conditioned-place-preference|CPP|drug-reinforced|hedonic|ICSS|incentive|instrumental-response|intracranial-self-stimulation|operant|reinforcement|reinforcing|reward|self-administered|self-administration', -'sensitization':'sensitization', +'relapse':'craving|drug seeking|reinstatement|relapse|seeking', +'reward':'conditioned place preference|CPP|drug reinforced|hedonic|ICSS|incentive|instrumental response|intracranial self stimulation|operant|reinforcement|reinforcing|reward|self administered|self administration', +'sensitization':'behavioral sensitization|locomotor sensitization|drug sensitization|incentive sensitization', +'social':'social', 'withdrawal':'withdrawal'} brain_d={'accumbens':'acbc|acbs|accumbal|accumbens|core|Nacc|NacSh|shell', 'amygdala':'amy|amygdala|bla|cea|cna', -'cortex':'cerebral|cingulate|cortex|cortico-limbic|corticolimbic|corticostriatal|infralimbic|insula|insular|mPFC|orbitofrontal|pfc|prefrontal|prelimbic|prl|vmpfc', +'cortex':'cerebral|cingulate|cortex|cortico limbic|corticolimbic|corticostriatal|infralimbic|insular*|mPFC|orbitofrontal|pfc|prefrontal|prelimbic|prl|vmpfc', 'habenula':'habenula|lhb|mhb', -'hippocampus':'ca1|ca3|dentate-gyrus|dhpc|hip|hipp|hippocampal|hippocampus|subiculum|vhipp|vhpc', -'hypothalamus':'hypothalamic|hypothalamus|LHA|paraventricular-nucleus|PVN', -'striatum':'basal-ganglia|caudate|globus-pallidus|GPI|putamen|STR|striatal|striatum', -'VTA':'limbic|mesoaccumbal|mesoaccumbens|mesolimbic|midbrain|pvta|ventral-tegmental|vta'} +'hippocampus':'ca1|ca3|dentate gyrus|dhpc|hip|hipp|hippocampal|hippocampus|subiculum|vhipp|vhpc', +'hypothalamus':'hypothalamic|hypothalamus|LHA|paraventricular nucleus|PVN', +'striatum':'basal ganglia|caudate|globus pallidus|GPI|putamen|STR|striatal|striatum', +'VTA':'limbic|mesoaccumbal|mesoaccumbens|mesolimbic|midbrain|pvta|ventral tegmental|vta'} -drug_d={'alcohol':'acamprosate|alcohol|alcoholic|alcoholics|alcoholism|antabuse|campral|disulfiram|ethanol|naltrexone|revia|vivitrol', +drug_d={'alcohol':'acamprosate|alcohol|alcoholics*|alcoholism|antabuse|campral|disulfiram|ethanol|naltrexone|revia|vivitrol', 'amphetamine':'AMPH|amphetamine|METH|methamphetamine', 'benzodiazepine':'adinazolam|alprazolam|benzodiazepine|benzos|brotizolam|chlordiazepoxide|climazolam|clobazam|clonazepam|clorazepate|diazepam|estazolam|flunitrazepam|flurazepam|halazepam|librium|loprazolam|lorazepam|lormetazepam|midazolam|nimetazepam|nitrazepam|normison|oxazepam|prazepam|temazepam|triazolam|valium|xanax', -'cannabinoid':'acylethanolamines|cannabichromene|cannabidiol|cannabigerol|cannabinoid|cannabinoids|cannabinol|cannabis|cannabivarin|cesamet|drobinal|dronabinol|endocannabinoid|endocannabinoids|epidiolex|JWH-018|JWH-122|JWH-250|marijuana|marinol|nabilone|Oleoylethanolamide|palmitoylethanolamide|phytocannabinoid|rimonabant|SR141716|SR144528|syndros|tetrahydrocannabinol|tetrahydrocannabivarin|thc|thc-9', +'cannabinoid':'acylethanolamines|cannabichromene|cannabidiol|cannabigerol|cannabinoids*|cannabinol|cannabis|cannabivarin|cesamet|drobinal|dronabinol|endocannabinoids*|epidiolex|JWH 018|JWH 122|JWH 250|marijuana|marinol|nabilone|Oleoylethanolamide|palmitoylethanolamide|phytocannabinoid|rimonabant|SR141716|SR144528|syndros|tetrahydrocannabinol|tetrahydrocannabivarin|thc|thc 9', 'cocaine':'cocaine', -'nicotine':'nicotine|smoker|smokers|smoking|tobacco', -'opioid':'buprenorphine|codeine|fentanyl|heroin|hycodan|hydrocodone|hydromorphone|kadian|kratom|methadone|morphine|naloxone|opioid|opioids|oxycodone|oxycontin|percocet|suboxone|tramadol|ultram|vicodin', -'psychedelics':'ayahuasca|ecstasy|ibogaine|ketamine|LSD|lysergic-acid-diethylamide|MDMA|mescaline|methylenedioxymethamphetamine|N-methoxybenzyl|NBOMe|NBOMes|peyote|psilocybin|psychedelic|psychedelics'} +'nicotine':'nicotine|smokers*|smoking|tobacco', +'opioid':'buprenorphine|codeine|fentanyl|heroin|hycodan|hydrocodone|hydromorphone|kadian|kratom|methadone|morphine|naloxone|opioids*|oxycodone|oxycontin|percocet|suboxone|tramadol|ultram|vicodin', +'psychedelics':'ayahuasca|ecstasy|ibogaine|ketamine|LSD|lysergic acid diethylamide|MDMA|mescaline|methylenedioxymethamphetamine|N methoxybenzyl|NBOMes*|peyote|psilocybin|psychedelic|psychedelics'} -function_d={'neuroplasticity':'boutons|epsc|epsp|IPSC|IPSP|long-term-depression|long-term-potentiation|LTD|LTP|mIPSC|neurite|neurogenesis|neuroplasticity|plasticity|synaptic', -'neurotransmission':'5-ht|acetylcholine|cholinergic|DAergic|dopamine|dopaminergic|GABA|GABAergic|glutamate|glutamatergic|muscarinic|neuropeptide|neuropeptides|neurotransmission|nicotinic|serotonergic|serotonin', +function_d={'neuroplasticity':'boutons*|epsc|epsp|IPSC|IPSP|long term depression|long term potentiation|LTD|LTP|mIPSC|neurite|neurogenesis|neuroplasticity|plasticity|synaptic', +'neurotransmission':'5 ht|acetylcholine|cholinergic|DAergic|dopamine|dopaminergic|GABA|GABAergic|glutamate|glutamatergic|muscarinic|neuropeptides*|neurotransmission|nicotinic|serotonergic|serotonin', 'signalling':'glycosylation|phosphorylation|signaling|signalling|kinase|binding|signal transduction|second messengers|cGMP|cAMP', 'transcription':'histone|hypermethylation|hypomethylation|methylation|ribosome|transcription'} psychiatric_d={'anxiety':'anxiety|anxious', 'autism':'autism|autistic', -'bipolar':'bipolar-disorder', +'bipolar':'bipolar disorder', 'compulsive':'compulsive|obsessive', -'depression':'depression|depressive|major-depressive-disorder|MDD', -'impulsivity':'5-CSRTT|5-choice-task|delay-discounting|delay-exposure|delay-intolerance|delayed-reward|delay-task|five-choice-serial-reaction-time-task|impulsive|impulsivity|premature-responding', +'depression':'depression|depressive|major depressive disorder|MDD', +'impulsivity':'5 CSRTT|5 choice task|delay discounting|delay exposure|delay intolerance|delayed reward|delay task|five choice serial reaction time task|impulsive|impulsivity|premature responding', 'schizophrenia':'schizophrenia'} -stress_d={'PTSD':'PTSD|post-traumatic-stress|post-traumatic-stress-symptoms|post-traumatic-stress-disorder', -'stress':'distress|psychological-trauma|stress'} +cell_d={'neuron':'adrenergic neurons*|cholinergic neurons*|dopaminergic neurons*|gabaergic neurons*|glutamatergic neurons*|GnRH neurons*|interneurons*|monoaminergic neurons*|medium spiny neurons*|motor neurons*|neuronal cells*|nitrergic neurons*|noradrenergic neurons*|projection neurons*|pyramidal neurons*|sensory neurons*|serotonergic neurons*|somatostatin neurons*|neurons*|excitatory neurons*|inhibitory neurons*|corticospinal neurons*|dopamine neurons*|D1 neurons*|D2 neurons*|afferent neurons*|efferent neurons*|serotonin neurons*|cortical neurons*|hippocampal neurons*|DA neurons*|CNS neurons*|cortex neurons*|mesencephalic neurons*|orexin neurons*|catecholaminergic neurons*|striatal neurons*|bipolar neurons*|ganglion cells*|RGC|horizontal cells*|amacrine cells*', +'astrocyte':'astrocytic|astrocytes*|astroglia|astroglial', +'microglia':'microglia|microglial', +'endothelium':'endothelium|endothelial cells*', +'oligodendrocyte':'oligodendrocytes*'} + +stress_d={'PTSD':'PTSD|post traumatic stress|post traumatic stress symptoms*|post traumatic stress disorder', +'stress':'distress|psychological trauma|stress'} -- cgit v1.2.3