From efaf3a4abe2f6ae5b67578182085d18d05f25c5f Mon Sep 17 00:00:00 2001
From: Hao Chen
Date: Wed, 8 May 2019 01:55:31 -0500
Subject: multiple genes allowed
---
server.py | 25 ++++++++++++++++---------
templates/index.html | 14 ++++++++++++++
templates/layout.html | 46 ++++++++++++++++++++++++++++++++++++++++++++++
templates/network.html | 46 ++++++++++++++++++++++++++++++++++++++++++++++
4 files changed, 122 insertions(+), 9 deletions(-)
create mode 100644 templates/index.html
create mode 100644 templates/layout.html
create mode 100644 templates/network.html
diff --git a/server.py b/server.py
index 76cb63c..d65625e 100644
--- a/server.py
+++ b/server.py
@@ -19,14 +19,21 @@ def network():
nodes_list=[]
if request.method == 'POST':
term = request.form
- gene=term['query']
- nodes="{ data: { id: '" + gene + "', nodecolor:'#FADBD8'} },\n" + default_nodes
- tmp0=gene_addiction(gene)
- e0=generate_edges(tmp0)
- tmp1=gene_functional(gene)
- e1=generate_edges(tmp1)
- tmp2=gene_anatomical(gene)
- e2=generate_edges(tmp2)
- return render_template('network.html', elements=nodes+e0+e1+e2)
+ genes=term['query']
+ genes=genes.replace(",", " ")
+ genes=genes.replace(";", " ")
+ genes=genes.split()
+ nodes=default_nodes
+ edges=str()
+ for gene in genes:
+ nodes+="{ data: { id: '" + gene + "', nodecolor:'#FADBD8', fontweight:700} },\n"
+ tmp0=gene_addiction(gene)
+ e0=generate_edges(tmp0)
+ tmp1=gene_functional(gene)
+ e1=generate_edges(tmp1)
+ tmp2=gene_anatomical(gene)
+ e2=generate_edges(tmp2)
+ edges+=e0+e1+e2
+ return render_template('network.html', elements=nodes+edges)
if __name__ == '__main__':
app.run(debug=True)
diff --git a/templates/index.html b/templates/index.html
new file mode 100644
index 0000000..c7bafcd
--- /dev/null
+++ b/templates/index.html
@@ -0,0 +1,14 @@
+{% extends "layout.html" %}
+{% block content %}
+
+
+ Searching PubMed to find sentences related to addiction
+
+
+{% endblock %}
+
+
+
diff --git a/templates/layout.html b/templates/layout.html
new file mode 100644
index 0000000..1a81c1a
--- /dev/null
+++ b/templates/layout.html
@@ -0,0 +1,46 @@
+
+
+
+
+
+
+
+
+
+
+
+
+ GatPub: Gene Addictionness through PubMed
+
+
+
+
+
+
+ {% block content %}{% endblock %}
+
+
+
+
+
+
+
+
diff --git a/templates/network.html b/templates/network.html
new file mode 100644
index 0000000..24c18c1
--- /dev/null
+++ b/templates/network.html
@@ -0,0 +1,46 @@
+{% extends "layout.html" %}
+{% block content %}
+
+
+
+
+
+
+
+{% endblock %}
--
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