From a7e84e18bce88a1e40f25781a72365818a143ac4 Mon Sep 17 00:00:00 2001
From: Hao Chen
Date: Tue, 17 Mar 2020 15:15:20 -0500
Subject: create userdir

---
 ratspub.py | 7 +++++++
 server.py  | 1 +
 2 files changed, 8 insertions(+)

diff --git a/ratspub.py b/ratspub.py
index 5f57217..549ce12 100755
--- a/ratspub.py
+++ b/ratspub.py
@@ -162,6 +162,12 @@ nj6=generate_nodes_json(psychiatric_d, 'GWAS')
 
 
 
+pubmed_path=os.environ["EDIRECT_PUBMED_MASTER"]
+if ( not pubmed_path): 
+    pubmed_path="~/Dropbox/ChenLab/Hakan/RatsPub/PubMed"
+pubmed_path +="/Archive"
+'''
+print (pubmed_path)
 host= os.popen('hostname').read().strip()
 if host=="x1":
     pubmed_path="/run/media/hao/PubMed/Archive/"
@@ -171,3 +177,4 @@ elif host=="penguin2":
     pubmed_path="/export2/PubMed/Archive"
 elif host=="hchen":
     pubmed_path="~/Dropbox/ChenLab/Hakan/RatsPub/PubMed/Archive"
+'''
diff --git a/server.py b/server.py
index 2a3a8cc..15699ac 100755
--- a/server.py
+++ b/server.py
@@ -19,6 +19,7 @@ app=Flask(__name__)
 app.config['SECRET_KEY'] = '#DtfrL98G5t1dC*4'
 app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:///userspub.sqlite'
 db = SQLAlchemy(app)
+datadir="/export/ratspub/"
 
 # the sqlite database
 class users(db.Model):
-- 
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