From 2ad607c82756d39749056cf68a6b57cde50d5d3c Mon Sep 17 00:00:00 2001
From: Hao Chen
Date: Tue, 21 May 2019 16:36:07 -0500
Subject: url for GWAS nodes

---
 ratspub.py | 4 +++-
 server.py  | 9 ++++-----
 2 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/ratspub.py b/ratspub.py
index 9b24e9d..8ee1f74 100755
--- a/ratspub.py
+++ b/ratspub.py
@@ -86,11 +86,13 @@ def searchArchived(sets, query):
     for key in catCnt.keys():
         if sets=='gwas':
             nc=nodecolor["gwas"]
+            nodes += "{ data: { id: '" + key +  "', nodecolor: '" + nc + "', url:'https://www.ebi.ac.uk/gwas/search?query="+key.replace("_GWAS","")+"' } },\n"
         elif key in drug_d.keys():
             nc=nodecolor["drug"]
+            nodes += "{ data: { id: '" + key +  "', nodecolor: '" + nc + "', url:'/shownode?node="+key+"' } },\n"
         else:
             nc=nodecolor["addiction"]
-        nodes += "{ data: { id: '" + key +  "', nodecolor: '" + nc + "', nodetype: 'top150', url:'/shownode?node="+key+"' } },\n"
+            nodes += "{ data: { id: '" + key +  "', nodecolor: '" + nc + "', url:'/shownode?node="+key+"' } },\n"
         edgeID=dataFile+"|"+query+"|"+key
         edges+="{ data: { id: '" + edgeID+ "', source: '" + query + "', target: '" + key + "', sentCnt: " + str(catCnt[key]) + ",  url:'/sentences?edgeID=" + edgeID + "' } },\n"
     return(nodes+edges)
diff --git a/server.py b/server.py
index 24476c6..79ab2ca 100755
--- a/server.py
+++ b/server.py
@@ -63,14 +63,14 @@ def search():
             sent0=gene_category(gene, addiction_d, addiction, "addiction")
             e0=generate_edges(sent0, tf_name)
             #  
-            function=undic(function_d)
-            sent1=gene_category(gene, function_d, function, "function")
+            drug=undic(drug_d)
+            sent1=gene_category(gene, drug_d, drug, "drug")
             progress+=percent
             yield "data:"+str(progress)+"\n\n"
             e1=generate_edges(sent1, tf_name)
             #
-            drug=undic(drug_d)
-            sent2=gene_category(gene, drug_d, drug, "drug")
+            function=undic(function_d)
+            sent2=gene_category(gene, function_d, function, "function")
             progress+=percent
             yield "data:"+str(progress)+"\n\n"
             e2=generate_edges(sent2, tf_name)
@@ -224,7 +224,6 @@ def showGeneTopGene ():
         results=result_f.read()
     return render_template('sentences.html', sentences=results+"<p><br>")
 
-
 ## generate a page that lists all the top 150 addiction genes with links to cytoscape graph.
 @app.route("/allTopGenes")
 def top150genes():
-- 
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