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genome-browser: configure guix channels

master
Efraim Flashner 9 months ago
committed by Shepherd
parent
commit
864cc32f01
  1. 16
      genome-channels.scm
  2. 3
      run_genome_browser.sh

16
genome-channels.scm

@ -0,0 +1,16 @@
(list
(channel
(name 'gn-bioinformatics)
(url "http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics")
(commit
"0ee8053e002a5b19645c6e34ea3c90d5a65596c7"))
(channel
(name 'guix)
(url "https://git.savannah.gnu.org/git/guix.git")
(commit
"81b31ca8e1bb4c93e8910f1d3e2e0cf3e8435286")
(introduction
(make-channel-introduction
"9edb3f66fd807b096b48283debdcddccfea34bad"
(openpgp-fingerprint
"BBB0 2DDF 2CEA F6A8 0D1D E643 A2A0 6DF2 A33A 54FA")))))

3
run_genome_browser.sh

@ -1,2 +1,3 @@
#!/bin/sh
$(/home/shepherd/guix-profiles/genome-browser/bin/guix system container -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics /home/shepherd/guix-bioinformatics/gn/services/genome-browser.scm --network --share=/export/efraimf/UCSC_Genome/gbdb=/gbdb --share=/export/efraimf/UCSC_Genome/var-lib-mysql=/var/lib/mysql --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/cache/genome --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/www/html/trash)
/home/shepherd/guix-profiles/genome-browser/bin/guix build --no-grafts ucsc-genome-browser
$(/home/shepherd/guix-profiles/genome-browser/bin/guix system container /home/shepherd/guix-bioinformatics/gn/services/genome-browser.scm --network --share=/export/efraimf/UCSC_Genome/gbdb=/gbdb --share=/export/efraimf/UCSC_Genome/var-lib-mysql=/var/lib/mysql --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/cache/genome --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/www/html/trash)

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