# BNW

This contains the code for the Bayesian Network Webserver (BNW).

The master branch will be for running with GeneNetwork. I will keep a testing branch The main BNW website is compbio.uthsc.edu/BNW, which currently redirects to BNW_1.2.

The current development version of BNW is compbio.uthsc.edu/BNW_1.22. I added a couple of new visualizations to this version.

There are a couple of files in the info_files directory that provide descriptions of the BNW code and other information.

There are five branches.
1) master: This is currently compbio.uthsc.edu/BNW_1.22 on the BNW server.

2) matlab_original (compbio.uthsc.edu/BNW_1.01): This is functionally identical to the original BNW code. The only difference is that unused files were removed.

3) octave_version (compbio.uthsc.edu/BNW_1.02): This should perform similarly to the original version of BNW. However, instead of Matlab, Octave is used and a couple of new features were added.

4) octave_php_separate (compbio.uthsc.edu/BNW_1.1): The main goal here is to rewrite the code so that all calculations are performed in Octave. PHP code only reads from files and displays figures.  I am making other small changes along the way. This branch could probably be deleted at some point.

5) version-1.21: Temporarily keeping this version while cleaning up code and testing things in version 1.22.