From 8070dc963753142bb86c4ed698d91fd623ed28e7 Mon Sep 17 00:00:00 2001
From: ziejd2
Date: Thu, 28 Sep 2017 15:04:40 -0500
Subject: BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02
---
 sourcecodes/data/Eyoban.txt                        |    1 +
 sourcecodes/data/Eyocontinuous_input.txt           |  202 +++
 sourcecodes/data/Eyographviz.txt                   |   12 +
 sourcecodes/data/Eyographviz_new.txt               |   11 +
 sourcecodes/data/Eyogrviz_name_file.txt            |    9 +
 sourcecodes/data/Eyogrviz_name_file_new.txt        |    9 +
 sourcecodes/data/Eyok.txt                          |    1 +
 sourcecodes/data/Eyomap.txt                        |    8 +
 sourcecodes/data/Eyomapdata.txt                    |    1 +
 sourcecodes/data/Eyoname.txt                       |    1 +
 sourcecodes/data/Eyonet_figure.txt                 |  652 +++++++++
 sourcecodes/data/Eyonet_figure_new.txt             |  552 ++++++++
 sourcecodes/data/Eyonlevels.txt                    |    2 +
 sourcecodes/data/Eyonnode.txt                      |    1 +
 sourcecodes/data/Eyonrows.txt                      |    1 +
 sourcecodes/data/Eyoparent.txt                     |    1 +
 sourcecodes/data/Eyostructure_input.txt            |    9 +
 sourcecodes/data/Eyostructure_input_new.txt        |   10 +
 sourcecodes/data/Eyostructure_input_temp.txt       |    9 +
 sourcecodes/data/Eyostructure_old.txt              |    7 +
 sourcecodes/data/Eyothr.txt                        |    1 +
 sourcecodes/data/Eyotype.txt                       |    2 +
 sourcecodes/data/Eyovar.txt                        |    1 +
 sourcecodes/data/Eyovardata.txt                    |    1 +
 sourcecodes/data/Eyovarname.txt                    |    1 +
 sourcecodes/data/Eyowhite.txt                      |    1 +
 sourcecodes/data/Swzban.txt                        |   51 +
 sourcecodes/data/Swzcontinuous_input.txt           |   76 ++
 sourcecodes/data/Swzgraphviz.txt                   |   32 +
 sourcecodes/data/Swzgraphviz_new.txt               |   29 +
 sourcecodes/data/Swzk.txt                          |    1 +
 sourcecodes/data/Swzmap.txt                        |   14 +
 sourcecodes/data/Swzmapdata.txt                    |    1 +
 sourcecodes/data/Swzname.txt                       |    1 +
 sourcecodes/data/Swznet_figure.txt                 | 1387 ++++++++++++++++++++
 sourcecodes/data/Swznet_figure_new.txt             | 1287 ++++++++++++++++++
 sourcecodes/data/Swznlevels.txt                    |    2 +
 sourcecodes/data/Swznnode.txt                      |    1 +
 sourcecodes/data/Swznrows.txt                      |    1 +
 sourcecodes/data/Swzparent.txt                     |    1 +
 sourcecodes/data/Swzstructure_input.txt            |   15 +
 sourcecodes/data/Swzstructure_input_new.txt        |   16 +
 sourcecodes/data/Swzstructure_input_temp.txt       |   15 +
 sourcecodes/data/Swzstructure_old.txt              |   14 +
 sourcecodes/data/Swzthr.txt                        |    1 +
 sourcecodes/data/Swztier.txt                       |    1 +
 sourcecodes/data/Swztype.txt                       |    2 +
 sourcecodes/data/Swzvar.txt                        |    1 +
 sourcecodes/data/Swzvardata.txt                    |    1 +
 sourcecodes/data/Swzvarname.txt                    |    1 +
 sourcecodes/data/Swzwhite.txt                      |    1 +
 .../data/example1/old/Bqxrun_initialstructure.sh   |   38 +
 .../data/example2/old/hQGrun_initialstructure.sh   |   38 +
 .../example_chl/old/bWRrun_evidencemodified.sh     |   38 +
 .../example_chl/old/bWRrun_initialstructure.sh     |   38 +
 .../old/cuLrun_evidencemodified.sh                 |   38 +
 .../old/cuLrun_initialstructure.sh                 |   38 +
 .../example_sci/old/Llurun_evidencemodified.sh     |   38 +
 .../example_sci/old/Llurun_initialstructure.sh     |   38 +
 .../example_sci_bk/old/Llurun_evidencemodified.sh  |   38 +
 .../example_sci_bk/old/Llurun_initialstructure.sh  |   38 +
 .../old/TEbrun_evidencemodified.sh                 |   38 +
 .../old/TEbrun_initialstructure.sh                 |   38 +
 .../data/examplecar/old/OVIrun_evidencemodified.sh |   38 +
 .../data/examplecar/old/OVIrun_initialstructure.sh |   38 +
 .../old/MtXrun_initialstructure.sh                 |   38 +
 .../data/examplezoo/old/fSfrun_initialstructure.sh |   38 +
 sourcecodes/data/old/Backupfiles/evidencemodified  |  Bin 0 -> 452271 bytes
 sourcecodes/data/old/Backupfiles/initialstructure  |  Bin 0 -> 452404 bytes
 sourcecodes/data/old/Backupfiles/newintervention   |  Bin 0 -> 452401 bytes
 .../data/old/Backupfiles/temp_evidence_file        |   36 +
 .../data/old/Backupfiles/temp_intervention_file    |   36 +
 .../Backupfiles/temp_shell_file_initial_structure  |   36 +
 sourcecodes/data/old/evidencemodified              |  Bin 0 -> 452271 bytes
 sourcecodes/data/old/initialstructure              |  Bin 0 -> 452404 bytes
 sourcecodes/data/old/newintervention               |  Bin 0 -> 452401 bytes
 sourcecodes/data/old/temp_evidence_file            |   36 +
 sourcecodes/data/old/temp_intervention_file        |   36 +
 .../data/old/temp_shell_file_initial_structure     |   36 +
 79 files changed, 5282 insertions(+)
 create mode 100644 sourcecodes/data/Eyoban.txt
 create mode 100644 sourcecodes/data/Eyocontinuous_input.txt
 create mode 100644 sourcecodes/data/Eyographviz.txt
 create mode 100644 sourcecodes/data/Eyographviz_new.txt
 create mode 100644 sourcecodes/data/Eyogrviz_name_file.txt
 create mode 100644 sourcecodes/data/Eyogrviz_name_file_new.txt
 create mode 100644 sourcecodes/data/Eyok.txt
 create mode 100644 sourcecodes/data/Eyomap.txt
 create mode 100644 sourcecodes/data/Eyomapdata.txt
 create mode 100644 sourcecodes/data/Eyoname.txt
 create mode 100644 sourcecodes/data/Eyonet_figure.txt
 create mode 100644 sourcecodes/data/Eyonet_figure_new.txt
 create mode 100644 sourcecodes/data/Eyonlevels.txt
 create mode 100644 sourcecodes/data/Eyonnode.txt
 create mode 100644 sourcecodes/data/Eyonrows.txt
 create mode 100644 sourcecodes/data/Eyoparent.txt
 create mode 100644 sourcecodes/data/Eyostructure_input.txt
 create mode 100644 sourcecodes/data/Eyostructure_input_new.txt
 create mode 100644 sourcecodes/data/Eyostructure_input_temp.txt
 create mode 100644 sourcecodes/data/Eyostructure_old.txt
 create mode 100644 sourcecodes/data/Eyothr.txt
 create mode 100644 sourcecodes/data/Eyotype.txt
 create mode 100644 sourcecodes/data/Eyovar.txt
 create mode 100644 sourcecodes/data/Eyovardata.txt
 create mode 100644 sourcecodes/data/Eyovarname.txt
 create mode 100644 sourcecodes/data/Eyowhite.txt
 create mode 100644 sourcecodes/data/Swzban.txt
 create mode 100644 sourcecodes/data/Swzcontinuous_input.txt
 create mode 100644 sourcecodes/data/Swzgraphviz.txt
 create mode 100644 sourcecodes/data/Swzgraphviz_new.txt
 create mode 100644 sourcecodes/data/Swzk.txt
 create mode 100644 sourcecodes/data/Swzmap.txt
 create mode 100644 sourcecodes/data/Swzmapdata.txt
 create mode 100644 sourcecodes/data/Swzname.txt
 create mode 100644 sourcecodes/data/Swznet_figure.txt
 create mode 100644 sourcecodes/data/Swznet_figure_new.txt
 create mode 100644 sourcecodes/data/Swznlevels.txt
 create mode 100644 sourcecodes/data/Swznnode.txt
 create mode 100644 sourcecodes/data/Swznrows.txt
 create mode 100644 sourcecodes/data/Swzparent.txt
 create mode 100644 sourcecodes/data/Swzstructure_input.txt
 create mode 100644 sourcecodes/data/Swzstructure_input_new.txt
 create mode 100644 sourcecodes/data/Swzstructure_input_temp.txt
 create mode 100644 sourcecodes/data/Swzstructure_old.txt
 create mode 100644 sourcecodes/data/Swzthr.txt
 create mode 100644 sourcecodes/data/Swztier.txt
 create mode 100644 sourcecodes/data/Swztype.txt
 create mode 100644 sourcecodes/data/Swzvar.txt
 create mode 100644 sourcecodes/data/Swzvardata.txt
 create mode 100644 sourcecodes/data/Swzvarname.txt
 create mode 100644 sourcecodes/data/Swzwhite.txt
 create mode 100644 sourcecodes/data/example1/old/Bqxrun_initialstructure.sh
 create mode 100644 sourcecodes/data/example2/old/hQGrun_initialstructure.sh
 create mode 100644 sourcecodes/data/example_chl/old/bWRrun_evidencemodified.sh
 create mode 100644 sourcecodes/data/example_chl/old/bWRrun_initialstructure.sh
 create mode 100644 sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh
 create mode 100644 sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh
 create mode 100644 sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh
 create mode 100644 sourcecodes/data/example_sci/old/Llurun_initialstructure.sh
 create mode 100644 sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh
 create mode 100644 sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh
 create mode 100644 sourcecodes/data/example_time_series/old/TEbrun_evidencemodified.sh
 create mode 100644 sourcecodes/data/example_time_series/old/TEbrun_initialstructure.sh
 create mode 100644 sourcecodes/data/examplecar/old/OVIrun_evidencemodified.sh
 create mode 100644 sourcecodes/data/examplecar/old/OVIrun_initialstructure.sh
 create mode 100644 sourcecodes/data/examplecar15node/old/MtXrun_initialstructure.sh
 create mode 100644 sourcecodes/data/examplezoo/old/fSfrun_initialstructure.sh
 create mode 100644 sourcecodes/data/old/Backupfiles/evidencemodified
 create mode 100644 sourcecodes/data/old/Backupfiles/initialstructure
 create mode 100644 sourcecodes/data/old/Backupfiles/newintervention
 create mode 100644 sourcecodes/data/old/Backupfiles/temp_evidence_file
 create mode 100644 sourcecodes/data/old/Backupfiles/temp_intervention_file
 create mode 100644 sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure
 create mode 100644 sourcecodes/data/old/evidencemodified
 create mode 100644 sourcecodes/data/old/initialstructure
 create mode 100644 sourcecodes/data/old/newintervention
 create mode 100644 sourcecodes/data/old/temp_evidence_file
 create mode 100644 sourcecodes/data/old/temp_intervention_file
 create mode 100644 sourcecodes/data/old/temp_shell_file_initial_structure

(limited to 'sourcecodes/data')

diff --git a/sourcecodes/data/Eyoban.txt b/sourcecodes/data/Eyoban.txt
new file mode 100644
index 00000000..83e81b8b
--- /dev/null
+++ b/sourcecodes/data/Eyoban.txt
@@ -0,0 +1 @@
+From	To
diff --git a/sourcecodes/data/Eyocontinuous_input.txt b/sourcecodes/data/Eyocontinuous_input.txt
new file mode 100644
index 00000000..90b5d097
--- /dev/null
+++ b/sourcecodes/data/Eyocontinuous_input.txt
@@ -0,0 +1,202 @@
+Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
+2	2	1	1	1	1	1	1
+1	1	0.46259	1.2692	-1.3164	-0.44096	0.5929	-0.75422
+2	2	-0.10011	-0.88834	1.6407	0.99972	0.31288	0.65602
+2	2	-1.0533	-0.55296	1.2715	1.3686	-0.19153	0.37361
+2	1	0.042371	0.13573	-0.72659	-0.66133	0.43157	-1.6715
+2	1	-0.68686	-1.6152	-0.95019	-1.2239	0.12319	-0.79155
+2	2	-0.4558	0.090877	0.94224	1.2354	-0.36356	0.34937
+2	2	0.237	-0.49002	1.8939	1.4399	0.033059	1.3229
+2	1	0.070265	0.22547	-1.4903	-0.069341	-0.16148	-0.01449
+2	2	-0.69146	-0.43461	1.1501	0.21205	-0.18087	0.32746
+2	2	0.31535	-0.9858	0.57816	0.35924	0.12866	1.0553
+1	2	1.2718	0.39314	0.6669	0.90002	-0.30206	1.3376
+2	2	1.1871	-0.45611	0.87227	0.31014	-0.092846	0.81278
+1	2	-1.0168	-0.44286	1.6933	0.72968	0.038808	0.81906
+1	1	-0.25313	0.52468	0.02823	-0.20984	-0.075809	-1.3591
+2	1	-0.58108	-0.3967	-0.11925	-0.61288	0.46778	0.090941
+2	1	-0.88043	-0.28187	-1.1645	-1.2543	-0.28951	-1.039
+2	1	0.54121	0.24395	-1.0043	-1.4483	-0.19839	-2.5407
+1	2	0.47375	1.1319	0.68553	1.035	0.44043	1.3011
+1	2	0.57785	0.69093	1.5941	1.6735	0.19981	0.50708
+2	1	-0.43989	0.0024131	-1.5405	-1.2304	-0.15382	-1.1058
+1	2	0.38035	-0.063535	1.1606	1.3124	-0.38043	0.6277
+2	1	0.70114	-0.41044	-0.39767	-1.5424	0.27477	-0.76183
+2	2	-0.9406	-0.20526	1.3302	1.097	0.16006	1.2988
+2	1	0.52122	0.064793	-0.031492	0.21696	-0.41979	-0.79123
+2	1	-0.53387	-0.71043	-0.52344	-1.5584	-0.09538	-1.5781
+2	2	0.49563	-0.58126	0.7747	1.274	0.19196	0.10624
+1	1	1.1499	1.879	0.43595	0.73474	0.045381	-0.88645
+2	1	0.40705	-0.37647	-0.19815	-1.5366	0.37167	-0.10553
+1	1	0.62526	0.043371	-0.64449	-0.44076	-0.4318	-0.91807
+2	2	-0.61788	-0.62414	0.3169	0.85091	-0.10135	0.79065
+2	2	0.18491	-1.5226	1.1149	0.75046	0.25948	0.42431
+1	1	0.86063	0.92883	-1.1584	-0.099858	-0.55095	-0.064129
+2	1	-0.28946	0.0057533	-0.95703	-0.44018	0.084268	-0.23718
+2	2	-0.073096	0.16452	1.4444	1.1452	0.46025	0.30452
+2	2	0.15637	-0.73137	0.585	-0.046911	0.43881	1.2888
+2	1	0.081142	-0.63691	-0.14883	0.66593	-0.13479	-0.22207
+2	2	0.10876	-0.23383	1.8314	1.3282	0.4362	0.90139
+2	1	-1.0582	-0.97152	-0.57118	-1.2617	0.17115	-0.060679
+1	1	-0.47421	-0.56819	-0.38775	0.035215	0.51982	-1.6309
+1	1	-0.10242	0.8127	0.41773	-1.1308	-0.30719	-0.80758
+2	2	-0.083462	-0.4565	1.1556	0.3299	0.087362	0.31349
+2	1	-0.98158	0.01727	-1.3281	-1.4474	0.54555	-0.10096
+2	2	-0.80604	-0.19415	1.4986	1.3386	-0.16367	0.68271
+2	2	0.80082	-0.57853	1.0716	0.94015	-0.54114	0.032172
+1	1	2.0456	0.97954	-0.45536	-0.14332	-0.25819	-1.0833
+2	2	-0.30148	0.20623	0.64194	0.76414	-0.59067	0.64326
+2	2	-0.55625	-0.26957	1.8447	1.6568	-0.38077	0.58831
+2	1	0.11898	0.80706	-0.025844	-0.57984	-0.23395	-1.1554
+2	1	-0.095497	-1.0637	-0.92583	-0.57928	0.23695	-0.42992
+1	1	0.066154	0.73037	-0.73622	-0.57047	0.39169	0.40928
+2	2	0.81522	0.11381	0.68971	0.29219	0.037792	0.81502
+2	2	-0.65356	-0.20182	0.92089	0.92298	-0.5417	0.49215
+2	2	-0.90826	-0.10979	1.3847	0.75954	-0.20255	0.32975
+2	1	-0.25671	-1.1903	-1.4241	-1.6058	-0.062549	-1.3981
+1	1	-1.8038	-1.4801	-0.94121	-1.6244	0.4817	-0.0029469
+2	1	0.12651	0.028719	-1.5818	-1.0266	0.19779	-0.36357
+2	2	-1.0658	-0.58443	0.68956	0.35467	0.11177	1.5243
+2	1	0.14729	-0.15111	-0.027639	-0.2899	0.11533	-0.60305
+1	1	-0.76889	0.87161	-0.83556	-1.1777	-0.21878	-0.98527
+1	1	0.12252	0.49068	-0.2557	-1.5816	0.25332	-0.78715
+2	2	-0.40287	0.26456	0.62208	0.60909	0.36074	0.092703
+1	2	-0.78301	1.4641	1.3162	1.9448	-0.10841	0.9618
+2	1	-0.25018	-0.32797	-1.113	-1.6123	0.6272	-1.2718
+1	2	0.15804	-0.18147	2.4571	0.59504	-0.34056	0.8691
+1	2	-0.582	0.25738	1.4075	0.92251	-0.40889	0.66381
+2	2	-0.26827	0.58632	0.51883	1.5745	-0.13818	1.0526
+2	1	0.13453	0.18218	-0.51676	-0.54166	-0.36636	-1.206
+1	2	1.1502	0.36164	1.9983	1.0809	0.11272	0.67683
+2	1	0.27812	0.46559	-1.6109	-0.91039	0.3803	-0.71802
+1	2	0.15292	0.61921	0.71009	1.3063	-0.35819	0.8661
+2	1	0.19902	0.48986	-1.4026	-0.8495	0.47158	0.0622
+1	2	0.4838	1.1096	1.4392	1.1438	0.34739	0.084004
+2	2	-0.63609	-0.35105	0.63581	1.1939	-0.062938	0.91353
+2	1	0.64203	-0.5095	-1.7792	-0.88803	0.43482	-0.66314
+2	2	-0.18434	-0.48157	0.69942	0.56942	-0.019967	0.50506
+2	2	0.10168	-1.0928	1.2144	0.28313	0.22159	0.54058
+2	2	-0.18578	-0.45336	1.5468	0.99679	0.11821	1.0476
+2	1	-0.60607	-1.1275	-0.90963	-0.69014	-0.33163	-1.2734
+2	2	-0.35353	-0.42708	0.78989	0.14094	-0.056632	0.80598
+2	2	-0.020221	-1.1235	1.9782	-0.041281	0.19857	1.2488
+2	2	1.2346	-0.37121	1.3325	1.1237	-0.027458	1.0044
+1	1	-0.54489	1.6812	-0.59836	-0.012441	0.41243	-0.58835
+1	2	-0.029577	2.1707	1.3285	1.2109	0.29684	0.90646
+1	1	0.70774	1.0606	-1.3996	-0.020914	-0.60955	-1.2187
+1	2	0.07926	0.52862	1.3994	0.54549	0.55303	0.16155
+2	2	0.041856	-0.92023	0.87269	-0.66601	-0.15945	0.1004
+2	1	0.17665	0.31945	-1.7756	-0.60442	0.020525	-1.0625
+2	2	-0.090238	-0.65111	0.56993	-0.4117	-0.19486	-0.18849
+2	1	0.059166	-0.47194	-0.69068	-0.41022	0.25867	-0.057175
+2	1	0.10473	0.66887	0.082035	-0.55975	-0.28439	-1.468
+2	2	-0.20937	-0.36621	0.09609	0.28164	0.24673	-0.11107
+2	1	-1.2678	0.22369	-0.42201	-0.70103	0.075915	-1.3347
+2	1	-0.35467	0.11166	-0.42144	-0.095223	-0.29936	-0.68322
+1	1	0.84875	1.24	-0.81217	0.084034	-0.32224	-1.6241
+1	2	-0.45939	1.3208	0.97993	1.2991	-0.015791	1.487
+2	1	-0.42254	-0.57928	-0.58529	-2.2375	0.51999	-0.79909
+1	2	0.32092	-0.13796	0.67098	0.24639	-0.36066	-0.032948
+2	1	-1.2408	-0.94836	0.026276	-0.37981	-0.02237	-0.38777
+1	1	0.20959	2.1466	-1.7027	-1.3169	-0.16515	-1.046
+1	1	-0.10482	1.3773	-1.2998	-0.014223	0.34065	-0.35362
+2	1	-0.6188	-1.2477	-0.62084	0.27682	0.1674	-0.8918
+2	2	-0.97246	-0.73017	1.3843	1.5549	0.1067	0.85754
+2	2	0.74567	-0.032694	1.1153	0.97318	-0.0033905	0.85059
+1	1	0.29324	-0.090608	-0.4945	-1.0484	-0.14987	-1.0141
+1	2	-0.86818	0.44948	1.8531	0.51896	-0.021141	1.8486
+2	1	0.362	-0.29749	-0.66525	0.21709	-0.15594	-1.4087
+2	1	-0.17675	0.36465	-0.45423	-1.262	0.22968	-1.246
+2	1	-0.34633	-0.16067	-1.2216	-1.3019	-0.040891	-1.2935
+2	1	0.44608	-0.57732	0.25606	-1.1664	0.54705	-0.19859
+2	1	0.45398	-0.55214	-0.33433	-0.085418	-0.10094	-0.48509
+2	1	0.12407	0.022419	-1.0312	-0.47727	0.20924	-1.2961
+2	2	-0.76644	-1.1794	1.2345	0.84756	0.1532	0.77648
+2	1	-0.10329	-0.53768	-0.67677	-0.58708	-0.014634	-0.036347
+2	2	0.2378	0.15372	0.49652	0.29193	0.19047	1.152
+2	1	0.024605	-0.38937	-0.89907	-0.42106	0.16921	-0.80893
+2	1	0.28812	0.26265	-0.94234	-0.88527	-0.49803	0.48254
+2	2	0.85086	0.11783	1.5014	1.2382	0.24441	1.3649
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+2	1	0.67971	-0.27488	-0.50687	-0.79153	-0.093399	-1.391
+2	2	-0.91977	-0.66099	0.5801	0.46587	-0.2263	1.43
+2	1	0.88213	-0.48674	-0.42406	-1.2762	0.28981	-1.0813
+1	2	-0.36583	0.51518	1.4491	1.4995	-0.073755	1.1218
+2	2	-0.54006	-0.59443	0.81263	0.65809	-0.15621	1.2508
+1	1	1.2125	-0.012648	-0.92657	-0.81972	-0.1536	-1.0176
+2	1	0.42493	0.34558	-1.7672	-1.3503	-0.045928	0.37449
+2	2	0.17097	-0.86593	-0.13424	1.0257	0.058014	0.91044
+1	2	-1.393	0.5338	1.8514	2.291	0.15305	0.30028
+2	2	-0.58552	-1.5337	1.5133	0.9976	0.64638	1.4428
+2	1	0.046272	-0.56387	-0.86063	-1.0462	0.014457	-1.3038
+2	1	0.34933	-0.16796	-0.27854	-0.27327	-0.0040928	-0.17912
+2	2	-1.0672	0.3979	1.208	0.50111	-0.013978	0.015097
+2	1	0.31052	-0.46723	-1.1237	0.59267	0.30978	-1.0169
+2	1	-0.55337	-0.42776	-0.12612	-0.41838	-0.56558	-0.58189
+1	1	0.3925	0.15644	-0.72963	-0.66601	-0.10837	-0.27787
+2	1	-0.48513	-1.4119	-0.16889	-0.19646	-0.068098	-0.084247
+1	1	0.16692	1.5447	-1.3064	-1.3338	-0.25668	-0.48832
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+2	2	-0.065383	0.07156	1.4931	2.3215	0.85149	1.4585
+1	2	-1.119	0.70896	1.0498	0.74334	0.75838	1.6107
+1	1	-0.17682	-0.21029	-0.74465	-0.83806	0.10827	-1.2829
+2	1	0.69834	-0.082402	0.64008	-0.83119	-0.26766	0.36961
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+1	1	1.5369	1.8434	0.0030761	-0.59703	0.14497	-1.5165
+2	1	0.35023	-0.28475	-0.93594	-1.0937	-0.46614	-2.188
+1	2	0.62308	1.0873	-0.0037182	0.86847	-0.48699	-0.10105
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+2	1	-0.87288	-0.96382	-0.704	-1.2184	0.046903	-0.30008
+2	1	0.77586	-0.34168	-0.09867	-0.37744	-0.24309	-0.13441
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+1	2	-1.3273	1.0891	1.2544	0.98928	0.045725	0.54963
+1	1	0.59176	0.65915	-0.84578	-0.080229	-0.26961	0.24045
+2	1	-0.66958	-1.042	-1.2138	-0.7612	-0.22775	-0.40062
+2	1	1.1154	-0.57069	-0.6592	-2.1961	-0.013175	0.46007
+2	1	-0.5254	0.0031225	-0.77758	0.8169	0.13224	-0.65572
+1	2	0.24551	1.5078	0.10719	1.1454	0.70578	0.59051
+2	1	0.29875	-0.11455	-1.0497	-0.77881	0.080708	-0.48337
+2	2	-0.1047	0.011628	1.2504	0.41776	-0.20102	1.2252
+2	1	0.44808	-0.8165	-0.080134	-0.49618	0.051011	-0.71722
+1	2	2.0365	1.5592	1.3257	1.2472	-0.47899	0.10943
+2	2	-0.16507	-0.66011	0.98739	0.58519	0.245	-0.43277
+2	1	-0.028366	-0.16961	-1.3266	0.14248	-0.24634	-1.1154
+1	2	0.92842	1.8842	1.3169	1.0358	-0.20988	0.88021
+1	1	0.33158	0.32463	-0.50924	0.40233	0.54391	-0.24309
+2	1	1.2555	0.1928	-0.487	0.048779	-0.23483	-1.477
+1	2	0.75021	0.85943	-0.2323	0.10748	-0.68906	0.84276
+1	1	0.6297	1.7397	-1.6136	-0.43268	-0.21442	-0.77462
+1	2	0.53168	1.0807	1.0853	0.62304	0.44036	0.48087
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+2	1	-0.039695	-0.52447	0.91401	-0.93272	0.53434	-0.080746
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+2	1	-0.34708	-0.51457	-1.012	-0.39437	-0.55374	-1.144
+1	1	0.024082	0.7128	-1.3702	-1.4492	-0.10228	-0.59071
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+2	1	-0.043882	-0.62746	-0.82816	-0.40626	-0.051048	-0.61297
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+1	1	-0.06266	1.1144	-0.80524	-0.3189	-0.16038	-0.96372
+2	1	-1.1821	1.0798	-1.3407	-0.52643	0.12458	-0.7871
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+2	1	-1.073	0.022587	-1.7088	-1.3777	0.1964	-0.84025
+1	2	0.20928	1.8026	1.2073	2.78	0.15131	0.3448
+2	1	-1.1317	-0.6359	-0.70457	-1.676	-0.22886	-0.58769
+2	2	-0.039428	-0.58746	0.56	0.7896	-0.052581	0.99511
+2	1	0.55023	-0.20403	0.138	-0.70518	0.66927	-0.28861
+1	1	0.57423	1.1886	0.092876	0.025677	-0.41099	-1.2858
+1	1	-0.14179	1.5827	-0.94328	0.7703	-0.43967	-0.50448
+1	1	0.14666	1.0492	-0.0030259	-0.62418	-0.087515	-0.048386
diff --git a/sourcecodes/data/Eyographviz.txt b/sourcecodes/data/Eyographviz.txt
new file mode 100644
index 00000000..343e8cad
--- /dev/null
+++ b/sourcecodes/data/Eyographviz.txt
@@ -0,0 +1,12 @@
+digraph G {
+size="10,10";  ratio = fill;
+node [shape=square,width=1.5];
+0 -> 3;
+1 -> 4;
+1 -> 5;
+1 -> 7;
+3 -> 2;
+3 -> 5;
+4 -> 5;
+7 -> 4;
+}
\ No newline at end of file
diff --git a/sourcecodes/data/Eyographviz_new.txt b/sourcecodes/data/Eyographviz_new.txt
new file mode 100644
index 00000000..6428ed29
--- /dev/null
+++ b/sourcecodes/data/Eyographviz_new.txt
@@ -0,0 +1,11 @@
+digraph G {
+size="10,10";  ratio = fill;
+node [shape=square,width=1.5];
+0 -> 3;
+1 -> 4;
+1 -> 5;
+3 -> 2;
+3 -> 5;
+4 -> 5;
+7 -> 4;
+}
\ No newline at end of file
diff --git a/sourcecodes/data/Eyogrviz_name_file.txt b/sourcecodes/data/Eyogrviz_name_file.txt
new file mode 100644
index 00000000..26cc6e02
--- /dev/null
+++ b/sourcecodes/data/Eyogrviz_name_file.txt
@@ -0,0 +1,9 @@
+Geno1
+Geno2
+Trait1
+Trait2
+Trait3
+Trait4
+Trait5
+Trait6
+
diff --git a/sourcecodes/data/Eyogrviz_name_file_new.txt b/sourcecodes/data/Eyogrviz_name_file_new.txt
new file mode 100644
index 00000000..26cc6e02
--- /dev/null
+++ b/sourcecodes/data/Eyogrviz_name_file_new.txt
@@ -0,0 +1,9 @@
+Geno1
+Geno2
+Trait1
+Trait2
+Trait3
+Trait4
+Trait5
+Trait6
+
diff --git a/sourcecodes/data/Eyok.txt b/sourcecodes/data/Eyok.txt
new file mode 100644
index 00000000..d00491fd
--- /dev/null
+++ b/sourcecodes/data/Eyok.txt
@@ -0,0 +1 @@
+1
diff --git a/sourcecodes/data/Eyomap.txt b/sourcecodes/data/Eyomap.txt
new file mode 100644
index 00000000..e31c6365
--- /dev/null
+++ b/sourcecodes/data/Eyomap.txt
@@ -0,0 +1,8 @@
+Geno1	1	0.473175	1.665000
+Geno2	2	0.496318	1.430000
+Trait1	1	0.667809	-0.023687
+Trait2	1	0.796873	0.038552
+Trait3	2	1.036694	0.068708
+Trait4	1	0.984008	-0.010125
+Trait5	1	0.316471	0.008911
+Trait6	1	0.904542	-0.114267
diff --git a/sourcecodes/data/Eyomapdata.txt b/sourcecodes/data/Eyomapdata.txt
new file mode 100644
index 00000000..42b2fd9c
--- /dev/null
+++ b/sourcecodes/data/Eyomapdata.txt
@@ -0,0 +1 @@
+Trait5	Geno2	Trait6	Trait3	Geno1	Trait2	Trait4	Trait1
diff --git a/sourcecodes/data/Eyoname.txt b/sourcecodes/data/Eyoname.txt
new file mode 100644
index 00000000..8f42b468
--- /dev/null
+++ b/sourcecodes/data/Eyoname.txt
@@ -0,0 +1 @@
+Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
diff --git a/sourcecodes/data/Eyonet_figure.txt b/sourcecodes/data/Eyonet_figure.txt
new file mode 100644
index 00000000..87b08c02
--- /dev/null
+++ b/sourcecodes/data/Eyonet_figure.txt
@@ -0,0 +1,652 @@
+8
+1200	1200	
+Trait5	0	0
+Geno2	300	0
+Trait6	220	240
+Trait3	100	480
+Geno1	600	0
+Trait2	620	240
+Trait4	420	720
+Trait1	500	480
+Trait5	1
+250	150
+0
+0
+-3.2055	0.0025
+-3.1368	0.0030
+-3.0681	0.0038
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+-0.4583	0.3578
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+-0.3210	0.3772
+-0.2523	0.3846
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+-0.1149	0.3944
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+1.1213	0.2130
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+1.3960	0.1513
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+1.6707	0.0997
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+3.5251	0.0008
+3.5937	0.0007
+3.6624	0.0005
+Geno2	2
+250	150
+0
+3	3	4	7
+1	0.5700
+2	0.4300
+Trait6	1
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+1	2
+1	4
+-3.6825	0.0005
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diff --git a/sourcecodes/data/Eyonet_figure_new.txt b/sourcecodes/data/Eyonet_figure_new.txt
new file mode 100644
index 00000000..b0cb2df5
--- /dev/null
+++ b/sourcecodes/data/Eyonet_figure_new.txt
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+-1.7018	0.0000
+-1.6308	0.0000
+-1.5598	0.0000
+-1.4888	0.0000
+-1.4178	0.0000
+-1.3468	0.0000
+-1.2758	0.0000
+-1.2049	0.0000
+-1.1339	0.0000
+-1.0629	0.0000
+-0.9919	0.0000
+-0.9209	0.0000
+-0.8499	0.0000
+-0.7789	0.0000
+-0.7079	0.0000
+-0.6369	0.0000
+-0.5659	0.0000
+-0.4949	0.0000
+-0.4240	0.0001
+-0.3530	0.0002
+-0.2820	0.0004
+-0.2110	0.0009
+-0.1400	0.0019
+-0.0690	0.0037
+0.0020	0.0070
+0.0730	0.0129
+0.1440	0.0227
+0.2150	0.0386
+0.2859	0.0630
+0.3569	0.0990
+0.4279	0.1497
+0.4989	0.2176
+0.5699	0.3043
+0.6409	0.4094
+0.7119	0.5299
+0.7829	0.6599
+0.8539	0.7905
+0.9249	0.9110
+0.9959	1.0099
+1.0668	1.0772
+1.1378	1.1052
+1.2088	1.0909
+1.2798	1.0359
+1.3508	0.9463
+1.4218	0.8317
+1.4928	0.7031
+1.5638	0.5719
+1.6348	0.4475
+1.7058	0.3368
+1.7767	0.2439
+1.8477	0.1699
+1.9187	0.1139
+1.9897	0.0734
+2.0607	0.0455
+2.1317	0.0272
+2.2027	0.0156
+2.2737	0.0086
+2.3447	0.0046
+2.4157	0.0023
+2.4867	0.0011
+2.5576	0.0005
+2.6286	0.0002
+2.6996	0.0001
+2.7706	0.0000
+2.8416	0.0000
+2.9126	0.0000
+2.9836	0.0000
+3.0546	0.0000
+3.1256	0.0000
+3.1966	0.0000
+3.2675	0.0000
+3.3385	0.0000
+3.4095	0.0000
+3.4805	0.0000
+3.5515	0.0000
+3.6225	0.0000
+3.6935	0.0000
+3.7645	0.0000
+3.8355	0.0000
+Trait1	1
+250	150
+1	6
+0
+-3.6887	0.0001
+-3.6108	0.0002
+-3.5329	0.0002
+-3.4550	0.0003
+-3.3772	0.0004
+-3.2993	0.0005
+-3.2214	0.0007
+-3.1436	0.0009
+-3.0657	0.0012
+-2.9878	0.0016
+-2.9099	0.0020
+-2.8321	0.0026
+-2.7542	0.0034
+-2.6763	0.0043
+-2.5984	0.0054
+-2.5206	0.0068
+-2.4427	0.0085
+-2.3648	0.0106
+-2.2870	0.0131
+-2.2091	0.0161
+-2.1312	0.0196
+-2.0533	0.0237
+-1.9755	0.0285
+-1.8976	0.0341
+-1.8197	0.0406
+-1.7418	0.0479
+-1.6640	0.0562
+-1.5861	0.0656
+-1.5082	0.0761
+-1.4303	0.0876
+-1.3525	0.1003
+-1.2746	0.1141
+-1.1967	0.1291
+-1.1189	0.1450
+-1.0410	0.1619
+-0.9631	0.1796
+-0.8852	0.1981
+-0.8074	0.2171
+-0.7295	0.2364
+-0.6516	0.2558
+-0.5737	0.2751
+-0.4959	0.2940
+-0.4180	0.3123
+-0.3401	0.3296
+-0.2623	0.3457
+-0.1844	0.3603
+-0.1065	0.3732
+-0.0286	0.3842
+0.0492	0.3930
+0.1271	0.3995
+0.2050	0.4036
+0.2829	0.4052
+0.3607	0.4042
+0.4386	0.4008
+0.5165	0.3949
+0.5943	0.3866
+0.6722	0.3762
+0.7501	0.3637
+0.8280	0.3495
+0.9058	0.3338
+0.9837	0.3167
+1.0616	0.2987
+1.1395	0.2799
+1.2173	0.2607
+1.2952	0.2413
+1.3731	0.2219
+1.4509	0.2028
+1.5288	0.1842
+1.6067	0.1663
+1.6846	0.1492
+1.7624	0.1330
+1.8403	0.1178
+1.9182	0.1037
+1.9961	0.0907
+2.0739	0.0789
+2.1518	0.0681
+2.2297	0.0585
+2.3075	0.0499
+2.3854	0.0423
+2.4633	0.0357
+2.5412	0.0299
+2.6190	0.0248
+2.6969	0.0205
+2.7748	0.0169
+2.8527	0.0138
+2.9305	0.0112
+3.0084	0.0090
+3.0863	0.0072
+3.1641	0.0058
+3.2420	0.0046
+3.3199	0.0036
+3.3978	0.0028
+3.4756	0.0022
+3.5535	0.0017
+3.6314	0.0013
+3.7093	0.0010
+3.7871	0.0007
+3.8650	0.0006
+3.9429	0.0004
+4.0207	0.0003
+4.0986	0.0002
diff --git a/sourcecodes/data/Eyonlevels.txt b/sourcecodes/data/Eyonlevels.txt
new file mode 100644
index 00000000..c8ca46d0
--- /dev/null
+++ b/sourcecodes/data/Eyonlevels.txt
@@ -0,0 +1,2 @@
+Geno1	2	1
+Geno2	2	1
diff --git a/sourcecodes/data/Eyonnode.txt b/sourcecodes/data/Eyonnode.txt
new file mode 100644
index 00000000..45a4fb75
--- /dev/null
+++ b/sourcecodes/data/Eyonnode.txt
@@ -0,0 +1 @@
+8
diff --git a/sourcecodes/data/Eyonrows.txt b/sourcecodes/data/Eyonrows.txt
new file mode 100644
index 00000000..08839f6b
--- /dev/null
+++ b/sourcecodes/data/Eyonrows.txt
@@ -0,0 +1 @@
+200
diff --git a/sourcecodes/data/Eyoparent.txt b/sourcecodes/data/Eyoparent.txt
new file mode 100644
index 00000000..b8626c4c
--- /dev/null
+++ b/sourcecodes/data/Eyoparent.txt
@@ -0,0 +1 @@
+4
diff --git a/sourcecodes/data/Eyostructure_input.txt b/sourcecodes/data/Eyostructure_input.txt
new file mode 100644
index 00000000..09955440
--- /dev/null
+++ b/sourcecodes/data/Eyostructure_input.txt
@@ -0,0 +1,9 @@
+Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6	
+0	0	0	1	0	0	0	0	
+0	0	0	0	1	1	0	1	
+0	0	0	0	0	0	0	0	
+0	0	1	0	0	1	0	0	
+0	0	0	0	0	1	0	0	
+0	0	0	0	0	0	0	0	
+0	0	0	0	0	0	0	0	
+0	0	0	0	1	0	0	0	
diff --git a/sourcecodes/data/Eyostructure_input_new.txt b/sourcecodes/data/Eyostructure_input_new.txt
new file mode 100644
index 00000000..8c029bcd
--- /dev/null
+++ b/sourcecodes/data/Eyostructure_input_new.txt
@@ -0,0 +1,10 @@
+Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6	
+0	0	0	1	0	0	0	0	0	
+0	0	0	0	1	1	0	0	0	
+0	0	0	0	0	0	0	0	0	
+0	0	1	0	0	1	0	0	0	
+0	0	0	0	0	1	0	0	0	
+0	0	0	0	0	0	0	0	0	
+0	0	0	0	0	0	0	0	0	
+0	0	0	0	1	0	0	0	0	
+0	0	0	0	0	0	0	0	0	
diff --git a/sourcecodes/data/Eyostructure_input_temp.txt b/sourcecodes/data/Eyostructure_input_temp.txt
new file mode 100644
index 00000000..fc815603
--- /dev/null
+++ b/sourcecodes/data/Eyostructure_input_temp.txt
@@ -0,0 +1,9 @@
+Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6	
+0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	0.000000	0.000000	
+0.000000	0.000000	0.000000	0.000000	1.000000	1.000000	0.000000	1.000000	
+0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
+0.000000	0.000000	1.000000	0.000000	0.000000	1.000000	0.000000	0.000000	
+0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	
+0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
+0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
+0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	0.000000	
diff --git a/sourcecodes/data/Eyostructure_old.txt b/sourcecodes/data/Eyostructure_old.txt
new file mode 100644
index 00000000..2cbd496f
--- /dev/null
+++ b/sourcecodes/data/Eyostructure_old.txt
@@ -0,0 +1,7 @@
+Geno1	0.3350	0.6650
+Trait2	0.0037	0.0045	0.0055	0.0067	0.0081	0.0097	0.0116	0.0139	0.0165	0.0195	0.0229	0.0268	0.0313	0.0363	0.0420	0.0483	0.0553	0.0631	0.0716	0.0809	0.0910	0.1019	0.1135	0.1260	0.1392	0.1530	0.1675	0.1826	0.1981	0.2139	0.2300	0.2462	0.2623	0.2782	0.2937	0.3088	0.3231	0.3366	0.3490	0.3603	0.3703	0.3788	0.3858	0.3912	0.3948	0.3967	0.3968	0.3951	0.3916	0.3865	0.3796	0.3713	0.3614	0.3503	0.3379	0.3246	0.3103	0.2954	0.2799	0.2640	0.2479	0.2317	0.2156	0.1998	0.1842	0.1691	0.1546	0.1406	0.1274	0.1148	0.1031	0.0921	0.0819	0.0725	0.0640	0.0561	0.0490	0.0426	0.0369	0.0318	0.0273	0.0233	0.0198	0.0168	0.0141	0.0119	0.0099	0.0082	0.0068	0.0056	0.0046	0.0038	0.0031	0.0025	0.0020	0.0016	0.0013	0.0010	0.0008	0.0006	0.0005
+Geno2	0.5700	0.4300
+Trait3	0.0086	0.0101	0.0119	0.0140	0.0163	0.0190	0.0220	0.0254	0.0292	0.0335	0.0383	0.0435	0.0494	0.0558	0.0628	0.0704	0.0786	0.0875	0.0970	0.1072	0.1181	0.1295	0.1415	0.1541	0.1672	0.1807	0.1946	0.2088	0.2232	0.2378	0.2524	0.2668	0.2811	0.2951	0.3086	0.3216	0.3338	0.3453	0.3559	0.3654	0.3738	0.3811	0.3870	0.3916	0.3948	0.3966	0.3969	0.3957	0.3932	0.3892	0.3838	0.3771	0.3692	0.3601	0.3500	0.3389	0.3270	0.3143	0.3010	0.2872	0.2731	0.2587	0.2441	0.2295	0.2150	0.2007	0.1867	0.1730	0.1597	0.1469	0.1346	0.1229	0.1119	0.1014	0.0916	0.0824	0.0739	0.0660	0.0587	0.0521	0.0460	0.0405	0.0355	0.0310	0.0270	0.0234	0.0203	0.0174	0.0150	0.0128	0.0109	0.0092	0.0078	0.0066	0.0055	0.0046	0.0038	0.0032	0.0026	0.0022	0.0018
+Trait4	0.0025	0.0031	0.0039	0.0048	0.0059	0.0071	0.0086	0.0104	0.0125	0.0150	0.0178	0.0211	0.0248	0.0291	0.0340	0.0395	0.0456	0.0525	0.0601	0.0685	0.0777	0.0877	0.0986	0.1102	0.1226	0.1358	0.1497	0.1643	0.1794	0.1949	0.2108	0.2270	0.2432	0.2593	0.2751	0.2906	0.3055	0.3196	0.3328	0.3448	0.3557	0.3651	0.3730	0.3792	0.3838	0.3865	0.3874	0.3865	0.3838	0.3792	0.3730	0.3651	0.3557	0.3448	0.3328	0.3196	0.3055	0.2906	0.2752	0.2593	0.2432	0.2270	0.2109	0.1950	0.1794	0.1643	0.1498	0.1359	0.1227	0.1102	0.0986	0.0877	0.0777	0.0685	0.0601	0.0525	0.0456	0.0395	0.0340	0.0291	0.0248	0.0211	0.0178	0.0150	0.0125	0.0104	0.0086	0.0071	0.0059	0.0048	0.0039	0.0031	0.0025	0.0020	0.0016	0.0013	0.0010	0.0008	0.0006	0.0005	0.0004
+Trait6	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0020	0.0025	0.0031	0.0038	0.0046	0.0057	0.0069	0.0084	0.0101	0.0121	0.0145	0.0172	0.0204	0.0240	0.0282	0.0329	0.0382	0.0441	0.0508	0.0582	0.0664	0.0753	0.0851	0.0957	0.1071	0.1193	0.1323	0.1461	0.1605	0.1755	0.1910	0.2069	0.2232	0.2396	0.2560	0.2722	0.2881	0.3036	0.3184	0.3324	0.3454	0.3572	0.3677	0.3768	0.3843	0.3901	0.3942	0.3965	0.3969	0.3955	0.3923	0.3873	0.3806	0.3722	0.3624	0.3512	0.3387	0.3252	0.3108	0.2956	0.2799	0.2638	0.2474	0.2310	0.2147	0.1986	0.1829	0.1676	0.1529	0.1388	0.1255	0.1129	0.1011	0.0901	0.0799	0.0706	0.0620	0.0542	0.0472	0.0409	0.0353	0.0303	0.0259	0.0221	0.0187	0.0157	0.0132	0.0110	0.0092	0.0076	0.0062	0.0051	0.0042	0.0034	0.0027
+Trait1	0.0005	0.0006	0.0008	0.0011	0.0014	0.0018	0.0024	0.0030	0.0038	0.0048	0.0060	0.0075	0.0093	0.0115	0.0141	0.0172	0.0208	0.0250	0.0299	0.0356	0.0420	0.0494	0.0577	0.0669	0.0772	0.0886	0.1010	0.1144	0.1289	0.1443	0.1606	0.1777	0.1954	0.2136	0.2322	0.2508	0.2693	0.2874	0.3049	0.3215	0.3371	0.3512	0.3638	0.3746	0.3833	0.3900	0.3944	0.3964	0.3961	0.3934	0.3884	0.3812	0.3719	0.3606	0.3476	0.3331	0.3172	0.3003	0.2826	0.2644	0.2459	0.2272	0.2088	0.1907	0.1731	0.1562	0.1401	0.1250	0.1108	0.0976	0.0855	0.0744	0.0644	0.0554	0.0473	0.0402	0.0340	0.0286	0.0238	0.0198	0.0163	0.0134	0.0109	0.0088	0.0071	0.0057	0.0045	0.0036	0.0028	0.0022	0.0017	0.0013	0.0010	0.0008	0.0006	0.0004	0.0003	0.0002	0.0002	0.0001	0.0001
diff --git a/sourcecodes/data/Eyothr.txt b/sourcecodes/data/Eyothr.txt
new file mode 100644
index 00000000..2eb3c4fe
--- /dev/null
+++ b/sourcecodes/data/Eyothr.txt
@@ -0,0 +1 @@
+0.5
diff --git a/sourcecodes/data/Eyotype.txt b/sourcecodes/data/Eyotype.txt
new file mode 100644
index 00000000..285a68af
--- /dev/null
+++ b/sourcecodes/data/Eyotype.txt
@@ -0,0 +1,2 @@
+Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
+2	2	1	1	1	1	1	1	
diff --git a/sourcecodes/data/Eyovar.txt b/sourcecodes/data/Eyovar.txt
new file mode 100644
index 00000000..69628e91
--- /dev/null
+++ b/sourcecodes/data/Eyovar.txt
@@ -0,0 +1 @@
+3	5
\ No newline at end of file
diff --git a/sourcecodes/data/Eyovardata.txt b/sourcecodes/data/Eyovardata.txt
new file mode 100644
index 00000000..5e92a5e9
--- /dev/null
+++ b/sourcecodes/data/Eyovardata.txt
@@ -0,0 +1 @@
+1.3424108554384	1
\ No newline at end of file
diff --git a/sourcecodes/data/Eyovarname.txt b/sourcecodes/data/Eyovarname.txt
new file mode 100644
index 00000000..2b473922
--- /dev/null
+++ b/sourcecodes/data/Eyovarname.txt
@@ -0,0 +1 @@
+Trait6	Geno1
\ No newline at end of file
diff --git a/sourcecodes/data/Eyowhite.txt b/sourcecodes/data/Eyowhite.txt
new file mode 100644
index 00000000..83e81b8b
--- /dev/null
+++ b/sourcecodes/data/Eyowhite.txt
@@ -0,0 +1 @@
+From	To
diff --git a/sourcecodes/data/Swzban.txt b/sourcecodes/data/Swzban.txt
new file mode 100644
index 00000000..fdd12dda
--- /dev/null
+++ b/sourcecodes/data/Swzban.txt
@@ -0,0 +1,51 @@
+From	To
+Ifih1	rs3664317
+Oas1a	rs3664317
+Parp9	rs3664317
+Dhx58	rs3664317
+Cd1d1	rs3664317
+Irf7	rs3664317
+Oas3	rs3664317
+Pml	rs3664317
+Mx1	rs3664317
+Ifit1	rs3664317
+Trim25	rs3664317
+Oas1g	rs3664317
+Pglyrp3	rs3664317
+Ifih1	rs3664317
+Oas1a	Ifih1
+Parp9	Ifih1
+Dhx58	Ifih1
+Cd1d1	Ifih1
+Irf7	Ifih1
+Oas3	Ifih1
+Pml	Ifih1
+Mx1	Ifih1
+Ifit1	Ifih1
+Trim25	Ifih1
+Oas1g	Ifih1
+Pglyrp3	Ifih1
+Oas1a	rs3664317
+Parp9	rs3664317
+Dhx58	rs3664317
+Cd1d1	rs3664317
+Irf7	rs3664317
+Oas3	rs3664317
+Pml	rs3664317
+Mx1	rs3664317
+Ifit1	rs3664317
+Trim25	rs3664317
+Oas1g	rs3664317
+Pglyrp3	rs3664317
+Oas1a	Ifih1
+Parp9	Ifih1
+Dhx58	Ifih1
+Cd1d1	Ifih1
+Irf7	Ifih1
+Oas3	Ifih1
+Pml	Ifih1
+Mx1	Ifih1
+Ifit1	Ifih1
+Trim25	Ifih1
+Oas1g	Ifih1
+Pglyrp3	Ifih1
diff --git a/sourcecodes/data/Swzcontinuous_input.txt b/sourcecodes/data/Swzcontinuous_input.txt
new file mode 100644
index 00000000..ca8ea1e5
--- /dev/null
+++ b/sourcecodes/data/Swzcontinuous_input.txt
@@ -0,0 +1,76 @@
+rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
+2	1	1	1	1	1	1	1	1	1	1	1	1	1
+1	8.34	9.812	8.774	9.79	9.663	8.27	11.036	7.284	8.286	10.395	8.521	6.186	8.83
+1	8.368	9.738	8.566	9.144	9.484	8.818	11.03	6.977	8.294	10.076	8.529	5.968	8.828
+1	8.178	9.57	8.726	9.575	10.106	8.99	10.878	7.205	8.676	10.036	8.61	5.976	9.024
+1	8.116	9.901	8.904	9.959	9.793	8.336	11.105	7.598	8.316	10.292	8.401	5.814	8.836
+2	8.099	9.68	8.876	10.116	9.771	8.379	11.028	7.438	8.541	10.215	8.32	5.917	9.073
+1	8.262	9.59	8.24	10.088	8.938	7.832	10.486	6.752	7.825	9.908	8.196	6.15	8.446
+1	7.915	9.415	8.308	9.707	9.12	8.702	11.102	7.208	8.243	10.034	7.897	6.06	8.892
+2	8.565	10.002	8.96	9.779	10.322	9.24	11.278	7.644	8.893	10.42	8.773	5.914	9.407
+1	8.189	9.774	8.541	9.939	9.134	7.819	10.766	7.122	8.352	10.113	8.492	6.269	9.055
+1	8.476	9.954	8.908	9.476	9.92	8.764	11.134	7.859	8.788	10.17	8.862	6.226	9.17
+2	8.119	9.946	8.876	9.578	10.02	8.734	11.244	7.85	8.838	10.557	8.56	5.98	9.353
+2	8.305	9.713	8.972	9.789	9.839	8.804	10.948	7.682	8.896	10.181	8.854	5.979	9.567
+2	8.654	10	9.306	9.439	10.457	9.223	10.922	7.082	8.942	10.131	9.162	6.01	9.74
+1	8.105	9.748	8.725	10.119	9.782	8.575	11.113	7.63	8.674	10.355	8.59	6.279	8.908
+1	8.247	9.715	8.829	9.646	9.953	9.668	11.112	7.384	9.221	10.19	8.64	6	9.552
+1	8.511	9.994	9.014	9.89	10.266	8.444	10.599	7.331	9.153	10.012	8.837	6.148	9.023
+2	8.947	10.28	9.483	9.398	11.23	9.86	11.324	8.006	9.772	10.524	9.587	5.865	10.067
+1	8.526	9.685	8.921	9.7	10.126	9.373	11.121	7.497	9.003	10.357	8.156	6.334	9.678
+2	8.06	9.745	9.092	9.278	10.231	8.976	10.998	7.578	9.145	10.283	8.611	6.168	9.413
+2	7.93	9.728	8.694	9.512	9.826	9.016	11.276	7.604	8.767	10.378	8.577	5.963	9.264
+2	8.511	9.686	9.014	8.982	10.508	10.108	11.304	7.441	9.133	10.341	9.04	6.2	9.974
+2	8.645	9.997	8.97	9.443	10.393	9.302	11.409	7.785	8.894	10.552	9.051	5.997	9.412
+2	8.293	9.802	9.001	9.524	10.156	9.263	11.212	7.772	8.581	10.433	8.514	6.093	9.177
+1	7.781	9.712	8.97	9.375	10.12	9.484	11.317	7.347	8.972	10.393	8.352	6.193	9.587
+2	8.465	9.88	8.913	9.816	9.965	8.852	11.138	7.537	8.625	10.426	8.617	6.044	9.556
+2	8.657	10.026	9.189	9.691	10.302	9.268	11.194	7.634	9.143	10.378	9.05	6.067	9.679
+2	7.634	9.606	8.36	9.465	8.41	8.605	11.183	6.942	8.174	9.952	7.478	6.09	9.535
+1	7.669	9.494	8.779	9.552	9.362	8.52	11.024	7.131	8.378	10.391	8.114	6.07	8.851
+2	8.618	10.212	9.433	9.672	10.442	9.21	11.328	8.045	9.322	10.5	9.128	5.994	9.656
+2	8.731	10.27	9.342	9.43	10.697	10.117	11.286	7.749	9.734	10.464	9.322	6.156	9.876
+1	7.554	9.524	8.759	9.93	9.52	8.279	10.82	7.32	8.316	10.31	8.186	6.068	9.046
+1	8.262	9.677	8.75	9.444	10.052	8.634	10.888	7.32	8.562	9.893	8.644	6.212	8.918
+1	7.823	9.628	8.66	9.529	9.578	8.736	11.206	7.171	8.408	10.062	8.111	5.838	9.033
+1	8.28	9.572	8.784	9.428	9.862	9.424	11.27	7.288	8.505	10.174	8.642	6.022	9.313
+2	9.09	10.053	9.599	9.469	11.004	9.882	11.436	8.521	9.814	10.562	9.704	6.044	10.061
+1	8.446	9.989	9.297	9.688	10.577	9.129	11.102	7.718	9.484	10.231	9.072	6.17	9.21
+1	8.668	9.858	9.195	9.385	10.695	9.249	11.028	7.765	9.367	10.319	9.179	6.136	9.563
+2	8.574	10.059	9.281	9.233	10.508	9.247	11.145	8.138	9.505	10.402	9.192	5.992	9.848
+2	8.523	10.052	9.131	9.507	10.418	9.413	11.187	7.641	9.304	10.465	9.063	6.095	9.733
+1	7.987	9.748	8.766	9.578	9.781	8.482	11.279	7.52	8.364	10.141	8.207	6.192	9.133
+2	8.466	9.429	8.946	9.395	9.715	9.071	11.388	7.592	8.078	10.32	8.326	6.108	9.021
+1	7.668	9.694	8.493	10.112	9.561	8.394	10.922	7.26	8.19	10.27	7.916	5.892	8.974
+2	8.379	10.037	9.155	9.683	10.281	9.2	10.913	7.173	9.404	10.381	9.097	6.099	9.714
+2	7.805	9.654	8.454	9.198	10.065	9.468	11.217	6.917	8.43	10.459	8.11	6.068	9.068
+1	7.981	9.8	8.553	9.946	9.862	8.901	11.085	7.214	8.393	10.373	8.19	6.05	9.015
+1	7.746	9.688	8.578	9.901	9.358	7.866	10.928	7.354	7.929	10.233	8.066	5.754	8.883
+1	7.997	9.859	8.795	9.867	9.817	8.734	11.109	7.416	8.67	10.247	8.176	6.143	9.081
+1	8.674	9.689	9.06	9.81	10.544	8.995	11.189	7.781	9.219	10.07	8.98	5.992	9.143
+1	8.088	9.49	8.676	9.456	10.184	8.737	10.998	7.222	8.538	10.192	8.441	6.147	8.55
+1	8.001	9.801	8.669	9.977	9.383	8.274	11.055	7.231	7.913	10.272	8.277	5.931	9.009
+2	8.218	9.458	8.781	9.214	9.66	8.87	10.738	7.241	8.289	10.029	8.612	6.125	9.38
+1	7.684	9.56	8.75	10.077	9.686	8.27	11.102	7.206	8.13	10.212	8.07	6.018	8.984
+2	8.326	9.696	8.88	9.714	10.014	9.08	11.055	7.256	8.494	10.054	8.63	6.177	9.162
+2	8.906	10.106	9.412	9.704	11.06	9.854	11.335	7.799	10.103	10.471	9.25	6.033	9.97
+1	8.073	9.793	8.626	9.879	9.262	8.408	10.844	7.108	8.368	9.959	8.261	6.052	8.916
+2	8.527	10.026	9.143	9.244	10.597	9.566	11.108	7.778	9.748	10.351	9.153	6.055	9.698
+2	8.614	10.05	9.202	9.508	10.66	9.63	11.156	7.758	9.789	10.324	9.068	6.15	9.948
+2	8.522	10.158	8.992	9.684	9.992	8.55	11.125	7.914	8.976	10.311	8.574	5.889	9.566
+1	8.086	9.6	8.522	9.544	9.641	8.514	10.99	7.386	8.506	10.194	8.234	6.02	8.736
+1	7.873	9.596	8.452	9.422	9.278	8.509	10.958	7.057	8.081	9.981	7.969	6.136	8.958
+2	8.371	9.99	8.949	9.931	10.195	8.935	10.83	7.694	9.183	10.493	9.124	6.128	9.396
+2	8.476	9.982	9.115	9.639	10.465	9.833	11.105	8.058	9.9	10.351	9.182	6.05	9.884
+1	8.512	9.995	8.846	9.951	9.561	8.558	10.769	7.584	8.901	10.139	8.769	5.959	9.203
+1	8.358	9.858	8.99	9.981	10.123	9.368	10.989	7.463	9.327	9.93	8.54	6.02	9.543
+1	8.23	9.614	8.806	9.919	9.939	9.108	11.184	7.766	8.793	10.174	8.605	5.972	9.068
+2	8.238	9.802	8.926	9.595	10.062	8.77	11.202	7.712	9.131	10.34	8.57	6.05	9.464
+1	8.533	10.108	9.083	10.214	10.514	8.463	11.008	7.356	9.344	10.196	8.736	6.262	9.257
+1	7.866	9.444	8.223	9.865	8.95	8.539	10.935	6.754	7.748	10.177	7.826	6.29	8.716
+2	8.888	10.031	9.158	9.407	10.8	9.547	11.238	7.659	9.602	10.398	9.337	6.028	9.529
+1	8.026	9.682	8.398	9.824	9.202	8.041	10.703	7.322	8.352	10.209	8.196	6.009	9.001
+2	8.974	10.071	9.451	9.348	11.061	9.686	11.255	8.077	10.101	10.323	9.557	6.006	10.072
+1	8.181	9.432	9.045	9.544	10.651	9.18	10.832	7.419	8.742	9.818	8.546	6.33	9.201
+1	8.137	9.676	9.024	9.37	10.206	9.944	10.985	7.226	8.9	10.362	8.918	6.352	9.367
+
diff --git a/sourcecodes/data/Swzgraphviz.txt b/sourcecodes/data/Swzgraphviz.txt
new file mode 100644
index 00000000..824e26d5
--- /dev/null
+++ b/sourcecodes/data/Swzgraphviz.txt
@@ -0,0 +1,32 @@
+digraph G {
+size="10,10";  ratio = fill;
+node [shape=square,width=1.5];
+rs3664317 -> Dhx58;
+rs3664317 -> Cd1d1;
+rs3664317 -> Ifit1;
+rs3664317 -> Oas1g;
+rs3664317 -> Ifih1;
+Parp9 -> Oas1a;
+Dhx58 -> Irf7;
+Dhx58 -> Mx1;
+Dhx58 -> Ifit1;
+Dhx58 -> Trim25;
+Dhx58 -> Oas1g;
+Cd1d1 -> Oas3;
+Cd1d1 -> Trim25;
+Cd1d1 -> Pglyrp3;
+Oas3 -> Pglyrp3;
+Pml -> Oas3;
+Pml -> Pglyrp3;
+Ifit1 -> Irf7;
+Ifit1 -> Mx1;
+Trim25 -> Parp9;
+Trim25 -> Pml;
+Trim25 -> Pglyrp3;
+Ifih1 -> Parp9;
+Ifih1 -> Dhx58;
+Ifih1 -> Cd1d1;
+Ifih1 -> Oas3;
+Ifih1 -> Ifit1;
+Ifih1 -> Trim25;
+}
\ No newline at end of file
diff --git a/sourcecodes/data/Swzgraphviz_new.txt b/sourcecodes/data/Swzgraphviz_new.txt
new file mode 100644
index 00000000..b6938a23
--- /dev/null
+++ b/sourcecodes/data/Swzgraphviz_new.txt
@@ -0,0 +1,29 @@
+digraph G {
+size="10,10";  ratio = fill;
+node [shape=square,width=1.5];
+rs3664317 -> Dhx58;
+rs3664317 -> Cd1d1;
+rs3664317 -> Ifit1;
+rs3664317 -> Oas1g;
+rs3664317 -> Ifih1;
+Parp9 -> Oas1a;
+Dhx58 -> Irf7;
+Dhx58 -> Mx1;
+Dhx58 -> Ifit1;
+Dhx58 -> Oas1g;
+Cd1d1 -> Oas3;
+Cd1d1 -> Pglyrp3;
+Oas3 -> Pglyrp3;
+Pml -> Oas3;
+Pml -> Pglyrp3;
+Ifit1 -> Irf7;
+Ifit1 -> Mx1;
+Trim25 -> Parp9;
+Trim25 -> Pml;
+Trim25 -> Pglyrp3;
+Ifih1 -> Parp9;
+Ifih1 -> Dhx58;
+Ifih1 -> Cd1d1;
+Ifih1 -> Oas3;
+Ifih1 -> Ifit1;
+}
\ No newline at end of file
diff --git a/sourcecodes/data/Swzk.txt b/sourcecodes/data/Swzk.txt
new file mode 100644
index 00000000..29d6383b
--- /dev/null
+++ b/sourcecodes/data/Swzk.txt
@@ -0,0 +1 @@
+100
diff --git a/sourcecodes/data/Swzmap.txt b/sourcecodes/data/Swzmap.txt
new file mode 100644
index 00000000..325f9a8d
--- /dev/null
+++ b/sourcecodes/data/Swzmap.txt
@@ -0,0 +1,14 @@
+rs3664317	2	0.501140	1.452055
+Oas1a	1	0.347301	8.281466
+Parp9	1	0.216211	9.804164
+Dhx58	1	0.302026	8.891247
+Cd1d1	1	0.268738	9.643644
+Irf7	1	0.548579	10.009315
+Oas3	1	0.548788	8.957397
+Pml	1	0.190985	11.075425
+Mx1	1	0.336795	7.483137
+Ifit1	1	0.569192	8.828521
+Trim25	1	0.176657	10.255192
+Oas1g	1	0.458134	8.632151
+Pglyrp3	1	0.123345	6.070877
+Ifih1	1	0.387383	9.298137
diff --git a/sourcecodes/data/Swzmapdata.txt b/sourcecodes/data/Swzmapdata.txt
new file mode 100644
index 00000000..64d3fc62
--- /dev/null
+++ b/sourcecodes/data/Swzmapdata.txt
@@ -0,0 +1 @@
+rs3664317	Ifih1	Cd1d1	Dhx58	Oas1g	Trim25	Pml	Oas3	Pglyrp3	Parp9	Oas1a	Ifit1	Mx1	Irf7
diff --git a/sourcecodes/data/Swzname.txt b/sourcecodes/data/Swzname.txt
new file mode 100644
index 00000000..1cc6fe19
--- /dev/null
+++ b/sourcecodes/data/Swzname.txt
@@ -0,0 +1 @@
+rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
diff --git a/sourcecodes/data/Swznet_figure.txt b/sourcecodes/data/Swznet_figure.txt
new file mode 100644
index 00000000..79f052a0
--- /dev/null
+++ b/sourcecodes/data/Swznet_figure.txt
@@ -0,0 +1,1387 @@
+14
+1200	1400	
+rs3664317	360	0
+Ifih1	480	175
+Cd1d1	160	350
+Dhx58	560	350
+Oas1g	180	525
+Trim25	480	525
+Pml	0	700
+Oas3	280	875
+Pglyrp3	360	1050
+Parp9	240	700
+Oas1a	680	875
+Ifit1	780	525
+Mx1	480	700
+Irf7	720	700
+rs3664317	2
+250	150
+0
+5	2	3	4	5	12
+1	0.5479
+2	0.4521
+Ifih1	1
+250	150
+1	1
+6	3	4	6	8	10	12
+-3.1997	0.0023
+-3.1378	0.0028
+-3.0758	0.0034
+-3.0138	0.0041
+-2.9518	0.0050
+-2.8899	0.0060
+-2.8279	0.0071
+-2.7659	0.0085
+-2.7039	0.0101
+-2.6420	0.0119
+-2.5800	0.0140
+-2.5180	0.0164
+-2.4560	0.0192
+-2.3941	0.0223
+-2.3321	0.0259
+-2.2701	0.0299
+-2.2081	0.0343
+-2.1462	0.0393
+-2.0842	0.0449
+-2.0222	0.0510
+-1.9602	0.0578
+-1.8983	0.0652
+-1.8363	0.0733
+-1.7743	0.0820
+-1.7124	0.0914
+-1.6504	0.1015
+-1.5884	0.1124
+-1.5264	0.1238
+-1.4645	0.1359
+-1.4025	0.1487
+-1.3405	0.1620
+-1.2785	0.1758
+-1.2166	0.1900
+-1.1546	0.2046
+-1.0926	0.2195
+-1.0306	0.2345
+-0.9687	0.2496
+-0.9067	0.2647
+-0.8447	0.2795
+-0.7827	0.2941
+-0.7208	0.3082
+-0.6588	0.3218
+-0.5968	0.3347
+-0.5348	0.3467
+-0.4729	0.3578
+-0.4109	0.3678
+-0.3489	0.3766
+-0.2870	0.3842
+-0.2250	0.3903
+-0.1630	0.3951
+-0.1010	0.3984
+-0.0391	0.4001
+0.0229	0.4003
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+0.3328	0.3787
+0.3948	0.3702
+0.4567	0.3605
+0.5187	0.3497
+0.5807	0.3379
+0.6427	0.3252
+0.7046	0.3118
+0.7666	0.2978
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+1.0145	0.2384
+1.0765	0.2234
+1.1385	0.2084
+1.2004	0.1938
+1.2624	0.1794
+1.3244	0.1655
+1.3863	0.1521
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+1.5103	0.1269
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+1.6342	0.1043
+1.6962	0.0940
+1.7582	0.0844
+1.8202	0.0755
+1.8821	0.0672
+1.9441	0.0597
+2.0061	0.0527
+2.0681	0.0464
+2.1300	0.0407
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+2.7498	0.0089
+2.8117	0.0075
+2.8737	0.0063
+2.9357	0.0052
+2.9977	0.0043
+Cd1d1	1
+250	150
+2	1	2
+3	6	8	9
+-3.4620	0.0010
+-3.3962	0.0012
+-3.3304	0.0015
+-3.2645	0.0019
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+-0.3674	0.3739
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+0.3569	0.3753
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+2.8590	0.0066
+2.9248	0.0054
+2.9907	0.0044
+3.0565	0.0036
+3.1223	0.0030
+Dhx58	1
+250	150
+2	1	2
+5	5	6	12	13	14
+-3.2125	0.0024
+-3.1470	0.0029
+-3.0814	0.0035
+-3.0159	0.0043
+-2.9503	0.0053
+-2.8848	0.0064
+-2.8192	0.0076
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diff --git a/sourcecodes/data/Swznet_figure_new.txt b/sourcecodes/data/Swznet_figure_new.txt
new file mode 100644
index 00000000..912d6251
--- /dev/null
+++ b/sourcecodes/data/Swznet_figure_new.txt
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diff --git a/sourcecodes/data/Swznlevels.txt b/sourcecodes/data/Swznlevels.txt
new file mode 100644
index 00000000..605579c3
--- /dev/null
+++ b/sourcecodes/data/Swznlevels.txt
@@ -0,0 +1,2 @@
+rs3664317	1	2
+
diff --git a/sourcecodes/data/Swznnode.txt b/sourcecodes/data/Swznnode.txt
new file mode 100644
index 00000000..8351c193
--- /dev/null
+++ b/sourcecodes/data/Swznnode.txt
@@ -0,0 +1 @@
+14
diff --git a/sourcecodes/data/Swznrows.txt b/sourcecodes/data/Swznrows.txt
new file mode 100644
index 00000000..fff0a247
--- /dev/null
+++ b/sourcecodes/data/Swznrows.txt
@@ -0,0 +1 @@
+74
diff --git a/sourcecodes/data/Swzparent.txt b/sourcecodes/data/Swzparent.txt
new file mode 100644
index 00000000..b8626c4c
--- /dev/null
+++ b/sourcecodes/data/Swzparent.txt
@@ -0,0 +1 @@
+4
diff --git a/sourcecodes/data/Swzstructure_input.txt b/sourcecodes/data/Swzstructure_input.txt
new file mode 100644
index 00000000..48837c69
--- /dev/null
+++ b/sourcecodes/data/Swzstructure_input.txt
@@ -0,0 +1,15 @@
+rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1	
+0	0	0	1	1	0	0	0	0	1	0	1	0	1	
+0	0	0	0	0	0	0	0	0	0	0	0	0	0	
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+0	0	0	0	0	1	0	0	1	1	1	1	0	0	
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+0	0	0	0	0	0	0	0	0	0	0	0	1	0	
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+0	0	0	0	0	0	0	0	0	0	0	0	0	0	
+0	0	1	1	1	0	1	0	0	1	1	0	0	0	
diff --git a/sourcecodes/data/Swzstructure_input_new.txt b/sourcecodes/data/Swzstructure_input_new.txt
new file mode 100644
index 00000000..52ac8617
--- /dev/null
+++ b/sourcecodes/data/Swzstructure_input_new.txt
@@ -0,0 +1,16 @@
+rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1	
+0	0	0	1	1	0	0	0	0	1	0	1	0	1	0	
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+0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
diff --git a/sourcecodes/data/Swzstructure_input_temp.txt b/sourcecodes/data/Swzstructure_input_temp.txt
new file mode 100644
index 00000000..f3589770
--- /dev/null
+++ b/sourcecodes/data/Swzstructure_input_temp.txt
@@ -0,0 +1,15 @@
+rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1	
+0.000000	0.808614	0.000000	1.000000	1.000000	0.000000	0.000000	0.000000	0.250558	1.000000	0.000000	0.960922	0.000000	1.000000	
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diff --git a/sourcecodes/data/Swzstructure_old.txt b/sourcecodes/data/Swzstructure_old.txt
new file mode 100644
index 00000000..f0815c7a
--- /dev/null
+++ b/sourcecodes/data/Swzstructure_old.txt
@@ -0,0 +1,14 @@
+rs3664317	0.5479	0.4521
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+Cd1d1	0.0010	0.0012	0.0015	0.0019	0.0023	0.0029	0.0035	0.0043	0.0052	0.0064	0.0077	0.0092	0.0110	0.0131	0.0156	0.0184	0.0216	0.0253	0.0295	0.0342	0.0395	0.0455	0.0521	0.0594	0.0674	0.0762	0.0857	0.0960	0.1072	0.1190	0.1316	0.1449	0.1589	0.1734	0.1885	0.2039	0.2197	0.2357	0.2517	0.2677	0.2834	0.2987	0.3135	0.3276	0.3408	0.3530	0.3641	0.3739	0.3823	0.3891	0.3944	0.3980	0.3999	0.4000	0.3984	0.3951	0.3901	0.3835	0.3753	0.3658	0.3549	0.3428	0.3297	0.3158	0.3011	0.2858	0.2702	0.2543	0.2382	0.2223	0.2064	0.1909	0.1758	0.1612	0.1471	0.1337	0.1210	0.1090	0.0978	0.0873	0.0776	0.0687	0.0606	0.0532	0.0465	0.0404	0.0350	0.0302	0.0259	0.0222	0.0189	0.0160	0.0135	0.0113	0.0095	0.0079	0.0066	0.0054	0.0044	0.0036	0.0030
+Ifit1	0.0063	0.0075	0.0089	0.0105	0.0124	0.0145	0.0169	0.0197	0.0228	0.0264	0.0303	0.0347	0.0397	0.0451	0.0511	0.0577	0.0649	0.0728	0.0812	0.0904	0.1002	0.1106	0.1217	0.1333	0.1456	0.1584	0.1717	0.1854	0.1995	0.2138	0.2284	0.2430	0.2576	0.2720	0.2862	0.3001	0.3134	0.3261	0.3381	0.3492	0.3593	0.3684	0.3763	0.3830	0.3883	0.3922	0.3948	0.3958	0.3954	0.3936	0.3902	0.3855	0.3795	0.3721	0.3635	0.3539	0.3432	0.3316	0.3192	0.3061	0.2925	0.2784	0.2641	0.2495	0.2349	0.2203	0.2059	0.1917	0.1778	0.1643	0.1513	0.1388	0.1268	0.1155	0.1047	0.0947	0.0852	0.0765	0.0683	0.0609	0.0540	0.0477	0.0420	0.0369	0.0322	0.0281	0.0244	0.0211	0.0181	0.0156	0.0133	0.0113	0.0096	0.0081	0.0068	0.0057	0.0048	0.0040	0.0033	0.0027	0.0023
+Oas1g	0.0009	0.0011	0.0014	0.0018	0.0022	0.0028	0.0034	0.0042	0.0052	0.0063	0.0076	0.0092	0.0111	0.0133	0.0158	0.0187	0.0221	0.0260	0.0304	0.0353	0.0409	0.0472	0.0542	0.0619	0.0704	0.0797	0.0899	0.1008	0.1125	0.1251	0.1383	0.1523	0.1670	0.1822	0.1978	0.2138	0.2300	0.2464	0.2626	0.2787	0.2943	0.3094	0.3238	0.3373	0.3497	0.3609	0.3707	0.3791	0.3858	0.3909	0.3942	0.3956	0.3953	0.3931	0.3891	0.3834	0.3761	0.3672	0.3568	0.3451	0.3323	0.3184	0.3038	0.2884	0.2726	0.2565	0.2401	0.2238	0.2077	0.1918	0.1763	0.1613	0.1469	0.1332	0.1202	0.1080	0.0965	0.0859	0.0761	0.0671	0.0589	0.0514	0.0447	0.0387	0.0334	0.0286	0.0244	0.0208	0.0176	0.0148	0.0124	0.0103	0.0086	0.0071	0.0058	0.0048	0.0039	0.0032	0.0025	0.0020	0.0016
+Ifih1	0.0023	0.0028	0.0034	0.0041	0.0050	0.0060	0.0071	0.0085	0.0101	0.0119	0.0140	0.0164	0.0192	0.0223	0.0259	0.0299	0.0343	0.0393	0.0449	0.0510	0.0578	0.0652	0.0733	0.0820	0.0914	0.1015	0.1124	0.1238	0.1359	0.1487	0.1620	0.1758	0.1900	0.2046	0.2195	0.2345	0.2496	0.2647	0.2795	0.2941	0.3082	0.3218	0.3347	0.3467	0.3578	0.3678	0.3766	0.3842	0.3903	0.3951	0.3984	0.4001	0.4003	0.3990	0.3961	0.3917	0.3859	0.3787	0.3702	0.3605	0.3497	0.3379	0.3252	0.3118	0.2978	0.2834	0.2685	0.2535	0.2384	0.2234	0.2084	0.1938	0.1794	0.1655	0.1521	0.1392	0.1269	0.1153	0.1043	0.0940	0.0844	0.0755	0.0672	0.0597	0.0527	0.0464	0.0407	0.0356	0.0310	0.0269	0.0232	0.0200	0.0171	0.0146	0.0124	0.0105	0.0089	0.0075	0.0063	0.0052	0.0043
+Parp9	0.0080	0.0094	0.0111	0.0130	0.0152	0.0177	0.0205	0.0237	0.0272	0.0312	0.0357	0.0406	0.0461	0.0521	0.0587	0.0659	0.0737	0.0821	0.0912	0.1009	0.1112	0.1222	0.1337	0.1458	0.1585	0.1716	0.1851	0.1990	0.2132	0.2276	0.2420	0.2565	0.2709	0.2850	0.2988	0.3121	0.3249	0.3369	0.3482	0.3586	0.3679	0.3761	0.3832	0.3889	0.3934	0.3964	0.3981	0.3983	0.3971	0.3945	0.3905	0.3851	0.3785	0.3706	0.3617	0.3516	0.3406	0.3288	0.3163	0.3031	0.2894	0.2754	0.2611	0.2467	0.2322	0.2178	0.2035	0.1895	0.1759	0.1626	0.1498	0.1375	0.1258	0.1146	0.1041	0.0942	0.0849	0.0763	0.0683	0.0609	0.0541	0.0480	0.0423	0.0372	0.0326	0.0285	0.0247	0.0214	0.0185	0.0159	0.0137	0.0117	0.0099	0.0084	0.0071	0.0060	0.0050	0.0042	0.0035	0.0029	0.0024
+Oas1a	0.0034	0.0042	0.0051	0.0061	0.0073	0.0087	0.0104	0.0124	0.0146	0.0172	0.0201	0.0235	0.0273	0.0316	0.0364	0.0417	0.0477	0.0543	0.0616	0.0695	0.0782	0.0876	0.0977	0.1085	0.1201	0.1323	0.1452	0.1586	0.1727	0.1871	0.2020	0.2172	0.2325	0.2479	0.2633	0.2785	0.2933	0.3077	0.3214	0.3344	0.3465	0.3576	0.3675	0.3761	0.3834	0.3892	0.3935	0.3963	0.3974	0.3969	0.3947	0.3910	0.3857	0.3790	0.3708	0.3613	0.3507	0.3389	0.3263	0.3128	0.2986	0.2839	0.2689	0.2536	0.2382	0.2228	0.2075	0.1925	0.1779	0.1637	0.1500	0.1369	0.1245	0.1127	0.1016	0.0912	0.0816	0.0726	0.0644	0.0569	0.0501	0.0439	0.0383	0.0332	0.0288	0.0248	0.0213	0.0182	0.0155	0.0131	0.0111	0.0093	0.0078	0.0065	0.0054	0.0045	0.0037	0.0030	0.0025	0.0020	0.0016
+Irf7	0.0002	0.0003	0.0004	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0021	0.0026	0.0033	0.0040	0.0050	0.0061	0.0075	0.0091	0.0111	0.0133	0.0160	0.0191	0.0226	0.0267	0.0314	0.0367	0.0428	0.0495	0.0570	0.0654	0.0746	0.0846	0.0956	0.1074	0.1201	0.1336	0.1478	0.1628	0.1784	0.1946	0.2111	0.2279	0.2448	0.2617	0.2783	0.2946	0.3102	0.3250	0.3388	0.3514	0.3627	0.3725	0.3806	0.3870	0.3916	0.3942	0.3948	0.3935	0.3903	0.3851	0.3781	0.3694	0.3591	0.3473	0.3343	0.3201	0.3050	0.2892	0.2728	0.2561	0.2392	0.2223	0.2056	0.1891	0.1732	0.1577	0.1430	0.1290	0.1157	0.1033	0.0918	0.0812	0.0714	0.0625	0.0544	0.0472	0.0407	0.0349	0.0298	0.0253	0.0214	0.0180	0.0151	0.0125	0.0104	0.0086	0.0070	0.0057	0.0047	0.0038	0.0030	0.0024
+Mx1	0.0028	0.0035	0.0043	0.0053	0.0066	0.0081	0.0098	0.0119	0.0144	0.0173	0.0207	0.0246	0.0291	0.0342	0.0400	0.0465	0.0539	0.0621	0.0711	0.0811	0.0919	0.1037	0.1164	0.1300	0.1444	0.1595	0.1754	0.1918	0.2086	0.2258	0.2431	0.2604	0.2775	0.2941	0.3102	0.3254	0.3396	0.3526	0.3641	0.3742	0.3824	0.3889	0.3934	0.3959	0.3964	0.3948	0.3911	0.3855	0.3780	0.3688	0.3579	0.3455	0.3318	0.3170	0.3013	0.2849	0.2680	0.2508	0.2335	0.2162	0.1992	0.1826	0.1665	0.1510	0.1363	0.1223	0.1092	0.0970	0.0858	0.0754	0.0660	0.0574	0.0497	0.0428	0.0367	0.0312	0.0265	0.0223	0.0187	0.0156	0.0130	0.0107	0.0088	0.0072	0.0059	0.0047	0.0038	0.0031	0.0024	0.0019	0.0015	0.0012	0.0009	0.0007	0.0006	0.0004	0.0003	0.0002	0.0002	0.0001	0.0001
+Trim25	0.0009	0.0012	0.0014	0.0018	0.0022	0.0026	0.0032	0.0039	0.0047	0.0056	0.0068	0.0081	0.0096	0.0113	0.0133	0.0156	0.0183	0.0213	0.0247	0.0286	0.0329	0.0377	0.0431	0.0490	0.0556	0.0628	0.0706	0.0791	0.0883	0.0982	0.1087	0.1200	0.1319	0.1444	0.1575	0.1711	0.1851	0.1996	0.2144	0.2293	0.2444	0.2594	0.2743	0.2889	0.3031	0.3168	0.3299	0.3422	0.3535	0.3638	0.3730	0.3809	0.3875	0.3927	0.3964	0.3987	0.3993	0.3985	0.3961	0.3922	0.3868	0.3801	0.3720	0.3627	0.3522	0.3408	0.3284	0.3153	0.3015	0.2872	0.2725	0.2576	0.2426	0.2275	0.2126	0.1979	0.1835	0.1695	0.1559	0.1429	0.1304	0.1186	0.1075	0.0970	0.0872	0.0781	0.0696	0.0619	0.0548	0.0483	0.0424	0.0371	0.0323	0.0281	0.0243	0.0209	0.0180	0.0153	0.0131	0.0111	0.0094
+Oas3	0.0017	0.0021	0.0026	0.0032	0.0039	0.0048	0.0059	0.0072	0.0087	0.0104	0.0125	0.0149	0.0177	0.0209	0.0246	0.0289	0.0337	0.0391	0.0452	0.0520	0.0595	0.0679	0.0771	0.0871	0.0980	0.1098	0.1224	0.1358	0.1501	0.1651	0.1808	0.1971	0.2139	0.2311	0.2486	0.2662	0.2837	0.3011	0.3181	0.3345	0.3502	0.3650	0.3787	0.3911	0.4021	0.4116	0.4195	0.4255	0.4297	0.4320	0.4324	0.4308	0.4273	0.4220	0.4148	0.4059	0.3954	0.3835	0.3702	0.3558	0.3405	0.3243	0.3075	0.2903	0.2728	0.2552	0.2377	0.2204	0.2034	0.1869	0.1709	0.1557	0.1411	0.1273	0.1144	0.1023	0.0911	0.0807	0.0712	0.0626	0.0547	0.0476	0.0413	0.0356	0.0306	0.0262	0.0223	0.0189	0.0159	0.0134	0.0112	0.0093	0.0077	0.0064	0.0052	0.0043	0.0035	0.0028	0.0023	0.0018	0.0015
+Pglyrp3	0.0011	0.0014	0.0017	0.0021	0.0026	0.0032	0.0039	0.0047	0.0057	0.0069	0.0083	0.0100	0.0119	0.0141	0.0166	0.0196	0.0229	0.0267	0.0310	0.0359	0.0413	0.0474	0.0541	0.0614	0.0695	0.0783	0.0878	0.0981	0.1091	0.1208	0.1332	0.1462	0.1598	0.1739	0.1885	0.2034	0.2185	0.2337	0.2490	0.2640	0.2788	0.2931	0.3069	0.3199	0.3320	0.3431	0.3530	0.3617	0.3690	0.3748	0.3790	0.3817	0.3827	0.3821	0.3798	0.3759	0.3705	0.3635	0.3552	0.3455	0.3347	0.3228	0.3100	0.2964	0.2822	0.2675	0.2525	0.2373	0.2220	0.2069	0.1919	0.1773	0.1631	0.1493	0.1362	0.1236	0.1118	0.1006	0.0902	0.0804	0.0715	0.0632	0.0557	0.0489	0.0427	0.0371	0.0321	0.0277	0.0238	0.0203	0.0173	0.0147	0.0124	0.0104	0.0087	0.0072	0.0060	0.0050	0.0041	0.0033	0.0027
+Pml	0.0001	0.0001	0.0002	0.0002	0.0003	0.0004	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0020	0.0026	0.0032	0.0040	0.0049	0.0060	0.0073	0.0089	0.0107	0.0129	0.0154	0.0184	0.0218	0.0257	0.0302	0.0353	0.0411	0.0476	0.0548	0.0628	0.0716	0.0813	0.0918	0.1032	0.1155	0.1285	0.1424	0.1570	0.1722	0.1880	0.2043	0.2209	0.2377	0.2546	0.2713	0.2877	0.3036	0.3188	0.3332	0.3466	0.3587	0.3695	0.3787	0.3863	0.3922	0.3962	0.3983	0.3985	0.3967	0.3930	0.3875	0.3802	0.3713	0.3608	0.3489	0.3357	0.3215	0.3064	0.2906	0.2743	0.2576	0.2408	0.2240	0.2073	0.1910	0.1751	0.1597	0.1450	0.1310	0.1178	0.1054	0.0938	0.0831	0.0733	0.0643	0.0562	0.0488	0.0422	0.0363	0.0311	0.0265	0.0225	0.0190	0.0159	0.0133	0.0111	0.0092	0.0076	0.0062
diff --git a/sourcecodes/data/Swzthr.txt b/sourcecodes/data/Swzthr.txt
new file mode 100644
index 00000000..b63ba696
--- /dev/null
+++ b/sourcecodes/data/Swzthr.txt
@@ -0,0 +1 @@
+0.9
diff --git a/sourcecodes/data/Swztier.txt b/sourcecodes/data/Swztier.txt
new file mode 100644
index 00000000..e71cfdda
--- /dev/null
+++ b/sourcecodes/data/Swztier.txt
@@ -0,0 +1 @@
+3,Tier1,1,rs3664317,Tier2,1,Ifih1,Tier3,12,Oas1a,Parp9,Dhx58,Cd1d1,Irf7,Oas3,Pml,Mx1,Ifit1,Trim25,Oas1g,Pglyrp3,
\ No newline at end of file
diff --git a/sourcecodes/data/Swztype.txt b/sourcecodes/data/Swztype.txt
new file mode 100644
index 00000000..1b707710
--- /dev/null
+++ b/sourcecodes/data/Swztype.txt
@@ -0,0 +1,2 @@
+rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
+2	1	1	1	1	1	1	1	1	1	1	1	1	1	
diff --git a/sourcecodes/data/Swzvar.txt b/sourcecodes/data/Swzvar.txt
new file mode 100644
index 00000000..73bc1323
--- /dev/null
+++ b/sourcecodes/data/Swzvar.txt
@@ -0,0 +1 @@
+1	6
\ No newline at end of file
diff --git a/sourcecodes/data/Swzvardata.txt b/sourcecodes/data/Swzvardata.txt
new file mode 100644
index 00000000..1874ec81
--- /dev/null
+++ b/sourcecodes/data/Swzvardata.txt
@@ -0,0 +1 @@
+1	-1.444562060943
\ No newline at end of file
diff --git a/sourcecodes/data/Swzvarname.txt b/sourcecodes/data/Swzvarname.txt
new file mode 100644
index 00000000..5ed21c88
--- /dev/null
+++ b/sourcecodes/data/Swzvarname.txt
@@ -0,0 +1 @@
+rs3664317	Trim25
\ No newline at end of file
diff --git a/sourcecodes/data/Swzwhite.txt b/sourcecodes/data/Swzwhite.txt
new file mode 100644
index 00000000..83e81b8b
--- /dev/null
+++ b/sourcecodes/data/Swzwhite.txt
@@ -0,0 +1 @@
+From	To
diff --git a/sourcecodes/data/example1/old/Bqxrun_initialstructure.sh b/sourcecodes/data/example1/old/Bqxrun_initialstructure.sh
new file mode 100644
index 00000000..a8a8ebe0
--- /dev/null
+++ b/sourcecodes/data/example1/old/Bqxrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure Bqx
+fi
+exit
diff --git a/sourcecodes/data/example2/old/hQGrun_initialstructure.sh b/sourcecodes/data/example2/old/hQGrun_initialstructure.sh
new file mode 100644
index 00000000..7d4cbfea
--- /dev/null
+++ b/sourcecodes/data/example2/old/hQGrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure hQG
+fi
+exit
diff --git a/sourcecodes/data/example_chl/old/bWRrun_evidencemodified.sh b/sourcecodes/data/example_chl/old/bWRrun_evidencemodified.sh
new file mode 100644
index 00000000..763a268b
--- /dev/null
+++ b/sourcecodes/data/example_chl/old/bWRrun_evidencemodified.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified bWR
+fi
+exit
diff --git a/sourcecodes/data/example_chl/old/bWRrun_initialstructure.sh b/sourcecodes/data/example_chl/old/bWRrun_initialstructure.sh
new file mode 100644
index 00000000..3725f758
--- /dev/null
+++ b/sourcecodes/data/example_chl/old/bWRrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure bWR
+fi
+exit
diff --git a/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh b/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh
new file mode 100644
index 00000000..5a228612
--- /dev/null
+++ b/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified cuL
+fi
+exit
diff --git a/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh b/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh
new file mode 100644
index 00000000..1d0835a4
--- /dev/null
+++ b/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure cuL
+fi
+exit
diff --git a/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh b/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh
new file mode 100644
index 00000000..ee0dde13
--- /dev/null
+++ b/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified Llu
+fi
+exit
diff --git a/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh b/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh
new file mode 100644
index 00000000..adde14dd
--- /dev/null
+++ b/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure Llu
+fi
+exit
diff --git a/sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh b/sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh
new file mode 100644
index 00000000..ee0dde13
--- /dev/null
+++ b/sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified Llu
+fi
+exit
diff --git a/sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh b/sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh
new file mode 100644
index 00000000..adde14dd
--- /dev/null
+++ b/sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure Llu
+fi
+exit
diff --git a/sourcecodes/data/example_time_series/old/TEbrun_evidencemodified.sh b/sourcecodes/data/example_time_series/old/TEbrun_evidencemodified.sh
new file mode 100644
index 00000000..ff2eafcd
--- /dev/null
+++ b/sourcecodes/data/example_time_series/old/TEbrun_evidencemodified.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified TEb
+fi
+exit
diff --git a/sourcecodes/data/example_time_series/old/TEbrun_initialstructure.sh b/sourcecodes/data/example_time_series/old/TEbrun_initialstructure.sh
new file mode 100644
index 00000000..3417deda
--- /dev/null
+++ b/sourcecodes/data/example_time_series/old/TEbrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure TEb
+fi
+exit
diff --git a/sourcecodes/data/examplecar/old/OVIrun_evidencemodified.sh b/sourcecodes/data/examplecar/old/OVIrun_evidencemodified.sh
new file mode 100644
index 00000000..dab5c39a
--- /dev/null
+++ b/sourcecodes/data/examplecar/old/OVIrun_evidencemodified.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified OVI
+fi
+exit
diff --git a/sourcecodes/data/examplecar/old/OVIrun_initialstructure.sh b/sourcecodes/data/examplecar/old/OVIrun_initialstructure.sh
new file mode 100644
index 00000000..d47ae324
--- /dev/null
+++ b/sourcecodes/data/examplecar/old/OVIrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure OVI
+fi
+exit
diff --git a/sourcecodes/data/examplecar15node/old/MtXrun_initialstructure.sh b/sourcecodes/data/examplecar15node/old/MtXrun_initialstructure.sh
new file mode 100644
index 00000000..8012f054
--- /dev/null
+++ b/sourcecodes/data/examplecar15node/old/MtXrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure MtX
+fi
+exit
diff --git a/sourcecodes/data/examplezoo/old/fSfrun_initialstructure.sh b/sourcecodes/data/examplezoo/old/fSfrun_initialstructure.sh
new file mode 100644
index 00000000..f20a9a29
--- /dev/null
+++ b/sourcecodes/data/examplezoo/old/fSfrun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure fSf
+fi
+exit
diff --git a/sourcecodes/data/old/Backupfiles/evidencemodified b/sourcecodes/data/old/Backupfiles/evidencemodified
new file mode 100644
index 00000000..9b3f7563
Binary files /dev/null and b/sourcecodes/data/old/Backupfiles/evidencemodified differ
diff --git a/sourcecodes/data/old/Backupfiles/initialstructure b/sourcecodes/data/old/Backupfiles/initialstructure
new file mode 100644
index 00000000..9ecf1bc7
Binary files /dev/null and b/sourcecodes/data/old/Backupfiles/initialstructure differ
diff --git a/sourcecodes/data/old/Backupfiles/newintervention b/sourcecodes/data/old/Backupfiles/newintervention
new file mode 100644
index 00000000..d818a943
Binary files /dev/null and b/sourcecodes/data/old/Backupfiles/newintervention differ
diff --git a/sourcecodes/data/old/Backupfiles/temp_evidence_file b/sourcecodes/data/old/Backupfiles/temp_evidence_file
new file mode 100644
index 00000000..b687ceaf
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_evidence_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified 
\ No newline at end of file
diff --git a/sourcecodes/data/old/Backupfiles/temp_intervention_file b/sourcecodes/data/old/Backupfiles/temp_intervention_file
new file mode 100644
index 00000000..cdf5ce0f
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_intervention_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/newintervention 
\ No newline at end of file
diff --git a/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure b/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure
new file mode 100644
index 00000000..5d1c323d
--- /dev/null
+++ b/sourcecodes/data/old/Backupfiles/temp_shell_file_initial_structure
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure 
\ No newline at end of file
diff --git a/sourcecodes/data/old/evidencemodified b/sourcecodes/data/old/evidencemodified
new file mode 100644
index 00000000..9b3f7563
Binary files /dev/null and b/sourcecodes/data/old/evidencemodified differ
diff --git a/sourcecodes/data/old/initialstructure b/sourcecodes/data/old/initialstructure
new file mode 100644
index 00000000..9ecf1bc7
Binary files /dev/null and b/sourcecodes/data/old/initialstructure differ
diff --git a/sourcecodes/data/old/newintervention b/sourcecodes/data/old/newintervention
new file mode 100644
index 00000000..d818a943
Binary files /dev/null and b/sourcecodes/data/old/newintervention differ
diff --git a/sourcecodes/data/old/temp_evidence_file b/sourcecodes/data/old/temp_evidence_file
new file mode 100644
index 00000000..b687ceaf
--- /dev/null
+++ b/sourcecodes/data/old/temp_evidence_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified 
\ No newline at end of file
diff --git a/sourcecodes/data/old/temp_intervention_file b/sourcecodes/data/old/temp_intervention_file
new file mode 100644
index 00000000..cdf5ce0f
--- /dev/null
+++ b/sourcecodes/data/old/temp_intervention_file
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/newintervention 
\ No newline at end of file
diff --git a/sourcecodes/data/old/temp_shell_file_initial_structure b/sourcecodes/data/old/temp_shell_file_initial_structure
new file mode 100644
index 00000000..5d1c323d
--- /dev/null
+++ b/sourcecodes/data/old/temp_shell_file_initial_structure
@@ -0,0 +1,36 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure 
\ No newline at end of file
-- 
cgit 1.4.1


From 324ebc8ddacab8e154047b8518afd5cbb5bb2fa4 Mon Sep 17 00:00:00 2001
From: ziejd2
Date: Thu, 28 Sep 2017 15:28:12 -0500
Subject: Deleting old files

---
 sourcecodes/data/Eyoban.txt                        |    1 -
 sourcecodes/data/Eyocontinuous_input.txt           |  202 ---
 sourcecodes/data/Eyographviz.txt                   |   12 -
 sourcecodes/data/Eyographviz_new.txt               |   11 -
 sourcecodes/data/Eyogrviz_name_file.txt            |    9 -
 sourcecodes/data/Eyogrviz_name_file_new.txt        |    9 -
 sourcecodes/data/Eyok.txt                          |    1 -
 sourcecodes/data/Eyomap.txt                        |    8 -
 sourcecodes/data/Eyomapdata.txt                    |    1 -
 sourcecodes/data/Eyoname.txt                       |    1 -
 sourcecodes/data/Eyonet_figure.txt                 |  652 ---------
 sourcecodes/data/Eyonet_figure_new.txt             |  552 --------
 sourcecodes/data/Eyonlevels.txt                    |    2 -
 sourcecodes/data/Eyonnode.txt                      |    1 -
 sourcecodes/data/Eyonrows.txt                      |    1 -
 sourcecodes/data/Eyoparent.txt                     |    1 -
 sourcecodes/data/Eyostructure_input.txt            |    9 -
 sourcecodes/data/Eyostructure_input_new.txt        |   10 -
 sourcecodes/data/Eyostructure_input_temp.txt       |    9 -
 sourcecodes/data/Eyostructure_old.txt              |    7 -
 sourcecodes/data/Eyothr.txt                        |    1 -
 sourcecodes/data/Eyotype.txt                       |    2 -
 sourcecodes/data/Eyovar.txt                        |    1 -
 sourcecodes/data/Eyovardata.txt                    |    1 -
 sourcecodes/data/Eyovarname.txt                    |    1 -
 sourcecodes/data/Eyowhite.txt                      |    1 -
 sourcecodes/data/Swzban.txt                        |   51 -
 sourcecodes/data/Swzcontinuous_input.txt           |   76 --
 sourcecodes/data/Swzgraphviz.txt                   |   32 -
 sourcecodes/data/Swzgraphviz_new.txt               |   29 -
 sourcecodes/data/Swzk.txt                          |    1 -
 sourcecodes/data/Swzmap.txt                        |   14 -
 sourcecodes/data/Swzmapdata.txt                    |    1 -
 sourcecodes/data/Swzname.txt                       |    1 -
 sourcecodes/data/Swznet_figure.txt                 | 1387 --------------------
 sourcecodes/data/Swznet_figure_new.txt             | 1287 ------------------
 sourcecodes/data/Swznlevels.txt                    |    2 -
 sourcecodes/data/Swznnode.txt                      |    1 -
 sourcecodes/data/Swznrows.txt                      |    1 -
 sourcecodes/data/Swzparent.txt                     |    1 -
 sourcecodes/data/Swzstructure_input.txt            |   15 -
 sourcecodes/data/Swzstructure_input_new.txt        |   16 -
 sourcecodes/data/Swzstructure_input_temp.txt       |   15 -
 sourcecodes/data/Swzstructure_old.txt              |   14 -
 sourcecodes/data/Swzthr.txt                        |    1 -
 sourcecodes/data/Swztier.txt                       |    1 -
 sourcecodes/data/Swztype.txt                       |    2 -
 sourcecodes/data/Swzvar.txt                        |    1 -
 sourcecodes/data/Swzvardata.txt                    |    1 -
 sourcecodes/data/Swzvarname.txt                    |    1 -
 sourcecodes/data/Swzwhite.txt                      |    1 -
 sourcecodes/data/evidencemodified                  |  Bin 452271 -> 0 bytes
 sourcecodes/data/initialstructure                  |  Bin 452404 -> 0 bytes
 sourcecodes/data/newintervention                   |  Bin 452401 -> 0 bytes
 sourcecodes/data/standardized_data.txt             |  201 ---
 sourcecodes/data/temp_evidence_file                |   36 -
 sourcecodes/data/temp_intervention_file            |   36 -
 sourcecodes/data/temp_shell_file_initial_structure |   36 -
 58 files changed, 4767 deletions(-)
 delete mode 100644 sourcecodes/data/Eyoban.txt
 delete mode 100644 sourcecodes/data/Eyocontinuous_input.txt
 delete mode 100644 sourcecodes/data/Eyographviz.txt
 delete mode 100644 sourcecodes/data/Eyographviz_new.txt
 delete mode 100644 sourcecodes/data/Eyogrviz_name_file.txt
 delete mode 100644 sourcecodes/data/Eyogrviz_name_file_new.txt
 delete mode 100644 sourcecodes/data/Eyok.txt
 delete mode 100644 sourcecodes/data/Eyomap.txt
 delete mode 100644 sourcecodes/data/Eyomapdata.txt
 delete mode 100644 sourcecodes/data/Eyoname.txt
 delete mode 100644 sourcecodes/data/Eyonet_figure.txt
 delete mode 100644 sourcecodes/data/Eyonet_figure_new.txt
 delete mode 100644 sourcecodes/data/Eyonlevels.txt
 delete mode 100644 sourcecodes/data/Eyonnode.txt
 delete mode 100644 sourcecodes/data/Eyonrows.txt
 delete mode 100644 sourcecodes/data/Eyoparent.txt
 delete mode 100644 sourcecodes/data/Eyostructure_input.txt
 delete mode 100644 sourcecodes/data/Eyostructure_input_new.txt
 delete mode 100644 sourcecodes/data/Eyostructure_input_temp.txt
 delete mode 100644 sourcecodes/data/Eyostructure_old.txt
 delete mode 100644 sourcecodes/data/Eyothr.txt
 delete mode 100644 sourcecodes/data/Eyotype.txt
 delete mode 100644 sourcecodes/data/Eyovar.txt
 delete mode 100644 sourcecodes/data/Eyovardata.txt
 delete mode 100644 sourcecodes/data/Eyovarname.txt
 delete mode 100644 sourcecodes/data/Eyowhite.txt
 delete mode 100644 sourcecodes/data/Swzban.txt
 delete mode 100644 sourcecodes/data/Swzcontinuous_input.txt
 delete mode 100644 sourcecodes/data/Swzgraphviz.txt
 delete mode 100644 sourcecodes/data/Swzgraphviz_new.txt
 delete mode 100644 sourcecodes/data/Swzk.txt
 delete mode 100644 sourcecodes/data/Swzmap.txt
 delete mode 100644 sourcecodes/data/Swzmapdata.txt
 delete mode 100644 sourcecodes/data/Swzname.txt
 delete mode 100644 sourcecodes/data/Swznet_figure.txt
 delete mode 100644 sourcecodes/data/Swznet_figure_new.txt
 delete mode 100644 sourcecodes/data/Swznlevels.txt
 delete mode 100644 sourcecodes/data/Swznnode.txt
 delete mode 100644 sourcecodes/data/Swznrows.txt
 delete mode 100644 sourcecodes/data/Swzparent.txt
 delete mode 100644 sourcecodes/data/Swzstructure_input.txt
 delete mode 100644 sourcecodes/data/Swzstructure_input_new.txt
 delete mode 100644 sourcecodes/data/Swzstructure_input_temp.txt
 delete mode 100644 sourcecodes/data/Swzstructure_old.txt
 delete mode 100644 sourcecodes/data/Swzthr.txt
 delete mode 100644 sourcecodes/data/Swztier.txt
 delete mode 100644 sourcecodes/data/Swztype.txt
 delete mode 100644 sourcecodes/data/Swzvar.txt
 delete mode 100644 sourcecodes/data/Swzvardata.txt
 delete mode 100644 sourcecodes/data/Swzvarname.txt
 delete mode 100644 sourcecodes/data/Swzwhite.txt
 delete mode 100644 sourcecodes/data/evidencemodified
 delete mode 100644 sourcecodes/data/initialstructure
 delete mode 100644 sourcecodes/data/newintervention
 delete mode 100644 sourcecodes/data/standardized_data.txt
 delete mode 100644 sourcecodes/data/temp_evidence_file
 delete mode 100644 sourcecodes/data/temp_intervention_file
 delete mode 100644 sourcecodes/data/temp_shell_file_initial_structure

(limited to 'sourcecodes/data')

diff --git a/sourcecodes/data/Eyoban.txt b/sourcecodes/data/Eyoban.txt
deleted file mode 100644
index 83e81b8b..00000000
--- a/sourcecodes/data/Eyoban.txt
+++ /dev/null
@@ -1 +0,0 @@
-From	To
diff --git a/sourcecodes/data/Eyocontinuous_input.txt b/sourcecodes/data/Eyocontinuous_input.txt
deleted file mode 100644
index 90b5d097..00000000
--- a/sourcecodes/data/Eyocontinuous_input.txt
+++ /dev/null
@@ -1,202 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
-2	2	1	1	1	1	1	1
-1	1	0.46259	1.2692	-1.3164	-0.44096	0.5929	-0.75422
-2	2	-0.10011	-0.88834	1.6407	0.99972	0.31288	0.65602
-2	2	-1.0533	-0.55296	1.2715	1.3686	-0.19153	0.37361
-2	1	0.042371	0.13573	-0.72659	-0.66133	0.43157	-1.6715
-2	1	-0.68686	-1.6152	-0.95019	-1.2239	0.12319	-0.79155
-2	2	-0.4558	0.090877	0.94224	1.2354	-0.36356	0.34937
-2	2	0.237	-0.49002	1.8939	1.4399	0.033059	1.3229
-2	1	0.070265	0.22547	-1.4903	-0.069341	-0.16148	-0.01449
-2	2	-0.69146	-0.43461	1.1501	0.21205	-0.18087	0.32746
-2	2	0.31535	-0.9858	0.57816	0.35924	0.12866	1.0553
-1	2	1.2718	0.39314	0.6669	0.90002	-0.30206	1.3376
-2	2	1.1871	-0.45611	0.87227	0.31014	-0.092846	0.81278
-1	2	-1.0168	-0.44286	1.6933	0.72968	0.038808	0.81906
-1	1	-0.25313	0.52468	0.02823	-0.20984	-0.075809	-1.3591
-2	1	-0.58108	-0.3967	-0.11925	-0.61288	0.46778	0.090941
-2	1	-0.88043	-0.28187	-1.1645	-1.2543	-0.28951	-1.039
-2	1	0.54121	0.24395	-1.0043	-1.4483	-0.19839	-2.5407
-1	2	0.47375	1.1319	0.68553	1.035	0.44043	1.3011
-1	2	0.57785	0.69093	1.5941	1.6735	0.19981	0.50708
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-2	2	0.85086	0.11783	1.5014	1.2382	0.24441	1.3649
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-2	2	-0.91977	-0.66099	0.5801	0.46587	-0.2263	1.43
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-1	2	-0.36583	0.51518	1.4491	1.4995	-0.073755	1.1218
-2	2	-0.54006	-0.59443	0.81263	0.65809	-0.15621	1.2508
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-1	2	-1.393	0.5338	1.8514	2.291	0.15305	0.30028
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-2	2	-0.065383	0.07156	1.4931	2.3215	0.85149	1.4585
-1	2	-1.119	0.70896	1.0498	0.74334	0.75838	1.6107
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-2	1	0.77586	-0.34168	-0.09867	-0.37744	-0.24309	-0.13441
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-1	2	-1.3273	1.0891	1.2544	0.98928	0.045725	0.54963
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-2	1	-0.5254	0.0031225	-0.77758	0.8169	0.13224	-0.65572
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-2	2	-0.1047	0.011628	1.2504	0.41776	-0.20102	1.2252
-2	1	0.44808	-0.8165	-0.080134	-0.49618	0.051011	-0.71722
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-2	2	-0.16507	-0.66011	0.98739	0.58519	0.245	-0.43277
-2	1	-0.028366	-0.16961	-1.3266	0.14248	-0.24634	-1.1154
-1	2	0.92842	1.8842	1.3169	1.0358	-0.20988	0.88021
-1	1	0.33158	0.32463	-0.50924	0.40233	0.54391	-0.24309
-2	1	1.2555	0.1928	-0.487	0.048779	-0.23483	-1.477
-1	2	0.75021	0.85943	-0.2323	0.10748	-0.68906	0.84276
-1	1	0.6297	1.7397	-1.6136	-0.43268	-0.21442	-0.77462
-1	2	0.53168	1.0807	1.0853	0.62304	0.44036	0.48087
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-2	1	-0.039695	-0.52447	0.91401	-0.93272	0.53434	-0.080746
-1	2	-0.16596	0.56821	0.76008	0.45442	0.10286	0.6539
-2	1	-0.4331	-0.89669	-1.3097	-1.2157	0.1065	-0.8512
-2	1	-0.34708	-0.51457	-1.012	-0.39437	-0.55374	-1.144
-1	1	0.024082	0.7128	-1.3702	-1.4492	-0.10228	-0.59071
-2	1	-0.0037109	-0.68845	-0.649	-0.91581	0.066805	-0.98583
-1	2	0.68706	0.067424	0.87139	0.7938	-0.099645	1.529
-1	1	-0.31183	0.57814	-0.80815	-0.66724	-0.31919	-0.61319
-2	1	-0.11153	-0.6246	-0.27979	-0.18363	0.83639	0.014919
-1	1	0.20406	1.5838	-0.96334	-1.1228	-0.17808	-1.2123
-1	1	-0.1134	0.63358	-0.53321	-0.84276	-0.27657	-0.36992
-2	1	0.25517	0.67006	-0.1349	0.18275	0.40982	-0.62487
-2	2	-1.2684	0.31042	0.91155	0.66143	0.2483	-0.12434
-2	2	-0.97542	-0.85419	0.7663	0.16362	-0.18737	0.67266
-2	1	-0.043882	-0.62746	-0.82816	-0.40626	-0.051048	-0.61297
-2	2	0.59605	-0.45852	1.2962	0.78156	-0.48154	0.17778
-1	1	-0.06266	1.1144	-0.80524	-0.3189	-0.16038	-0.96372
-2	1	-1.1821	1.0798	-1.3407	-0.52643	0.12458	-0.7871
-1	1	0.59446	0.89186	-0.97856	-0.64658	0.2712	-1.5538
-2	1	0.15067	0.41827	-1.0487	-1.0551	0.19143	-1.4537
-2	1	-1.073	0.022587	-1.7088	-1.3777	0.1964	-0.84025
-1	2	0.20928	1.8026	1.2073	2.78	0.15131	0.3448
-2	1	-1.1317	-0.6359	-0.70457	-1.676	-0.22886	-0.58769
-2	2	-0.039428	-0.58746	0.56	0.7896	-0.052581	0.99511
-2	1	0.55023	-0.20403	0.138	-0.70518	0.66927	-0.28861
-1	1	0.57423	1.1886	0.092876	0.025677	-0.41099	-1.2858
-1	1	-0.14179	1.5827	-0.94328	0.7703	-0.43967	-0.50448
-1	1	0.14666	1.0492	-0.0030259	-0.62418	-0.087515	-0.048386
diff --git a/sourcecodes/data/Eyographviz.txt b/sourcecodes/data/Eyographviz.txt
deleted file mode 100644
index 343e8cad..00000000
--- a/sourcecodes/data/Eyographviz.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-0 -> 3;
-1 -> 4;
-1 -> 5;
-1 -> 7;
-3 -> 2;
-3 -> 5;
-4 -> 5;
-7 -> 4;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/Eyographviz_new.txt b/sourcecodes/data/Eyographviz_new.txt
deleted file mode 100644
index 6428ed29..00000000
--- a/sourcecodes/data/Eyographviz_new.txt
+++ /dev/null
@@ -1,11 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-0 -> 3;
-1 -> 4;
-1 -> 5;
-3 -> 2;
-3 -> 5;
-4 -> 5;
-7 -> 4;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/Eyogrviz_name_file.txt b/sourcecodes/data/Eyogrviz_name_file.txt
deleted file mode 100644
index 26cc6e02..00000000
--- a/sourcecodes/data/Eyogrviz_name_file.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-Geno1
-Geno2
-Trait1
-Trait2
-Trait3
-Trait4
-Trait5
-Trait6
-
diff --git a/sourcecodes/data/Eyogrviz_name_file_new.txt b/sourcecodes/data/Eyogrviz_name_file_new.txt
deleted file mode 100644
index 26cc6e02..00000000
--- a/sourcecodes/data/Eyogrviz_name_file_new.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-Geno1
-Geno2
-Trait1
-Trait2
-Trait3
-Trait4
-Trait5
-Trait6
-
diff --git a/sourcecodes/data/Eyok.txt b/sourcecodes/data/Eyok.txt
deleted file mode 100644
index d00491fd..00000000
--- a/sourcecodes/data/Eyok.txt
+++ /dev/null
@@ -1 +0,0 @@
-1
diff --git a/sourcecodes/data/Eyomap.txt b/sourcecodes/data/Eyomap.txt
deleted file mode 100644
index e31c6365..00000000
--- a/sourcecodes/data/Eyomap.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-Geno1	1	0.473175	1.665000
-Geno2	2	0.496318	1.430000
-Trait1	1	0.667809	-0.023687
-Trait2	1	0.796873	0.038552
-Trait3	2	1.036694	0.068708
-Trait4	1	0.984008	-0.010125
-Trait5	1	0.316471	0.008911
-Trait6	1	0.904542	-0.114267
diff --git a/sourcecodes/data/Eyomapdata.txt b/sourcecodes/data/Eyomapdata.txt
deleted file mode 100644
index 42b2fd9c..00000000
--- a/sourcecodes/data/Eyomapdata.txt
+++ /dev/null
@@ -1 +0,0 @@
-Trait5	Geno2	Trait6	Trait3	Geno1	Trait2	Trait4	Trait1
diff --git a/sourcecodes/data/Eyoname.txt b/sourcecodes/data/Eyoname.txt
deleted file mode 100644
index 8f42b468..00000000
--- a/sourcecodes/data/Eyoname.txt
+++ /dev/null
@@ -1 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
diff --git a/sourcecodes/data/Eyonet_figure.txt b/sourcecodes/data/Eyonet_figure.txt
deleted file mode 100644
index 87b08c02..00000000
--- a/sourcecodes/data/Eyonet_figure.txt
+++ /dev/null
@@ -1,652 +0,0 @@
-8
-1200	1200	
-Trait5	0	0
-Geno2	300	0
-Trait6	220	240
-Trait3	100	480
-Geno1	600	0
-Trait2	620	240
-Trait4	420	720
-Trait1	500	480
-Trait5	1
-250	150
-0
-0
--3.2055	0.0025
--3.1368	0.0030
--3.0681	0.0038
--2.9994	0.0046
--2.9308	0.0057
--2.8621	0.0069
--2.7934	0.0083
--2.7247	0.0101
--2.6561	0.0121
--2.5874	0.0144
--2.5187	0.0172
--2.4500	0.0203
--2.3813	0.0240
--2.3127	0.0281
--2.2440	0.0328
--2.1753	0.0381
--2.1066	0.0441
--2.0379	0.0508
--1.9693	0.0582
--1.9006	0.0664
--1.8319	0.0754
--1.7632	0.0852
--1.6945	0.0958
--1.6259	0.1073
--1.5572	0.1195
--1.4885	0.1326
--1.4198	0.1463
--1.3511	0.1608
--1.2825	0.1758
--1.2138	0.1914
--1.1451	0.2074
--1.0764	0.2237
--1.0078	0.2401
--0.9391	0.2565
--0.8704	0.2728
--0.8017	0.2888
--0.7330	0.3042
--0.6644	0.3190
--0.5957	0.3330
--0.5270	0.3460
--0.4583	0.3578
--0.3896	0.3682
--0.3210	0.3772
--0.2523	0.3846
--0.1836	0.3904
--0.1149	0.3944
--0.0462	0.3965
-0.0224	0.3969
-0.0911	0.3953
-0.1598	0.3920
-0.2285	0.3868
-0.2971	0.3800
-0.3658	0.3715
-0.4345	0.3615
-0.5032	0.3502
-0.5719	0.3376
-0.6405	0.3240
-0.7092	0.3095
-0.7779	0.2942
-0.8466	0.2784
-0.9153	0.2622
-0.9839	0.2458
-1.0526	0.2294
-1.1213	0.2130
-1.1900	0.1969
-1.2587	0.1812
-1.3273	0.1659
-1.3960	0.1513
-1.4647	0.1373
-1.5334	0.1240
-1.6021	0.1114
-1.6707	0.0997
-1.7394	0.0888
-1.8081	0.0787
-1.8768	0.0694
-1.9454	0.0610
-2.0141	0.0533
-2.0828	0.0464
-2.1515	0.0401
-2.2202	0.0346
-2.2888	0.0297
-2.3575	0.0253
-2.4262	0.0215
-2.4949	0.0182
-2.5636	0.0153
-2.6322	0.0129
-2.7009	0.0107
-2.7696	0.0089
-2.8383	0.0074
-2.9070	0.0061
-2.9756	0.0050
-3.0443	0.0040
-3.1130	0.0033
-3.1817	0.0026
-3.2503	0.0021
-3.3190	0.0017
-3.3877	0.0014
-3.4564	0.0011
-3.5251	0.0008
-3.5937	0.0007
-3.6624	0.0005
-Geno2	2
-250	150
-0
-3	3	4	7
-1	0.5700
-2	0.4300
-Trait6	1
-250	150
-1	2
-1	4
--3.6825	0.0005
--3.6140	0.0006
--3.5455	0.0008
--3.4769	0.0010
--3.4084	0.0013
--3.3399	0.0016
--3.2713	0.0020
--3.2028	0.0025
--3.1343	0.0031
--3.0658	0.0038
--2.9972	0.0046
--2.9287	0.0057
--2.8602	0.0069
--2.7917	0.0084
--2.7231	0.0101
--2.6546	0.0121
--2.5861	0.0145
--2.5176	0.0172
--2.4490	0.0204
--2.3805	0.0240
--2.3120	0.0282
--2.2435	0.0329
--2.1749	0.0382
--2.1064	0.0441
--2.0379	0.0508
--1.9694	0.0582
--1.9008	0.0664
--1.8323	0.0753
--1.7638	0.0851
--1.6953	0.0957
--1.6267	0.1071
--1.5582	0.1193
--1.4897	0.1323
--1.4212	0.1461
--1.3526	0.1605
--1.2841	0.1755
--1.2156	0.1910
--1.1471	0.2069
--1.0785	0.2232
--1.0100	0.2396
--0.9415	0.2560
--0.8730	0.2722
--0.8044	0.2881
--0.7359	0.3036
--0.6674	0.3184
--0.5989	0.3324
--0.5303	0.3454
--0.4618	0.3572
--0.3933	0.3677
--0.3248	0.3768
--0.2562	0.3843
--0.1877	0.3901
--0.1192	0.3942
--0.0507	0.3965
-0.0179	0.3969
-0.0864	0.3955
-0.1549	0.3923
-0.2234	0.3873
-0.2920	0.3806
-0.3605	0.3722
-0.4290	0.3624
-0.4975	0.3512
-0.5661	0.3387
-0.6346	0.3252
-0.7031	0.3108
-0.7716	0.2956
-0.8402	0.2799
-0.9087	0.2638
-0.9772	0.2474
-1.0457	0.2310
-1.1143	0.2147
-1.1828	0.1986
-1.2513	0.1829
-1.3198	0.1676
-1.3884	0.1529
-1.4569	0.1388
-1.5254	0.1255
-1.5939	0.1129
-1.6625	0.1011
-1.7310	0.0901
-1.7995	0.0799
-1.8680	0.0706
-1.9366	0.0620
-2.0051	0.0542
-2.0736	0.0472
-2.1421	0.0409
-2.2107	0.0353
-2.2792	0.0303
-2.3477	0.0259
-2.4162	0.0221
-2.4848	0.0187
-2.5533	0.0157
-2.6218	0.0132
-2.6903	0.0110
-2.7589	0.0092
-2.8274	0.0076
-2.8959	0.0062
-2.9644	0.0051
-3.0330	0.0042
-3.1015	0.0034
-3.1700	0.0027
-Trait3	1
-250	150
-2	2	3
-1	7
--2.7825	0.0086
--2.7216	0.0101
--2.6608	0.0119
--2.5999	0.0140
--2.5390	0.0163
--2.4782	0.0190
--2.4173	0.0220
--2.3565	0.0254
--2.2956	0.0292
--2.2347	0.0335
--2.1739	0.0383
--2.1130	0.0435
--2.0521	0.0494
--1.9913	0.0558
--1.9304	0.0628
--1.8695	0.0704
--1.8087	0.0786
--1.7478	0.0875
--1.6870	0.0970
--1.6261	0.1072
--1.5652	0.1181
--1.5044	0.1295
--1.4435	0.1415
--1.3826	0.1541
--1.3218	0.1672
--1.2609	0.1807
--1.2000	0.1946
--1.1392	0.2088
--1.0783	0.2232
--1.0175	0.2378
--0.9566	0.2524
--0.8957	0.2668
--0.8349	0.2811
--0.7740	0.2951
--0.7131	0.3086
--0.6523	0.3216
--0.5914	0.3338
--0.5305	0.3453
--0.4697	0.3559
--0.4088	0.3654
--0.3480	0.3738
--0.2871	0.3811
--0.2262	0.3870
--0.1654	0.3916
--0.1045	0.3948
--0.0436	0.3966
-0.0172	0.3969
-0.0781	0.3957
-0.1389	0.3932
-0.1998	0.3892
-0.2607	0.3838
-0.3215	0.3771
-0.3824	0.3692
-0.4433	0.3601
-0.5041	0.3500
-0.5650	0.3389
-0.6259	0.3270
-0.6867	0.3143
-0.7476	0.3010
-0.8084	0.2872
-0.8693	0.2731
-0.9302	0.2587
-0.9910	0.2441
-1.0519	0.2295
-1.1128	0.2150
-1.1736	0.2007
-1.2345	0.1867
-1.2954	0.1730
-1.3562	0.1597
-1.4171	0.1469
-1.4779	0.1346
-1.5388	0.1229
-1.5997	0.1119
-1.6605	0.1014
-1.7214	0.0916
-1.7823	0.0824
-1.8431	0.0739
-1.9040	0.0660
-1.9649	0.0587
-2.0257	0.0521
-2.0866	0.0460
-2.1474	0.0405
-2.2083	0.0355
-2.2692	0.0310
-2.3300	0.0270
-2.3909	0.0234
-2.4518	0.0203
-2.5126	0.0174
-2.5735	0.0150
-2.6344	0.0128
-2.6952	0.0109
-2.7561	0.0092
-2.8169	0.0078
-2.8778	0.0066
-2.9387	0.0055
-2.9995	0.0046
-3.0604	0.0038
-3.1213	0.0032
-3.1821	0.0026
-3.2430	0.0022
-3.3039	0.0018
-Geno1	2
-250	150
-0
-1	6
-1	0.3350
-2	0.6650
-Trait2	1
-250	150
-1	5
-2	7	8
--3.0753	0.0037
--3.0078	0.0045
--2.9403	0.0055
--2.8728	0.0067
--2.8053	0.0081
--2.7378	0.0097
--2.6702	0.0116
--2.6027	0.0139
--2.5352	0.0165
--2.4677	0.0195
--2.4002	0.0229
--2.3327	0.0268
--2.2652	0.0313
--2.1977	0.0363
--2.1302	0.0420
--2.0627	0.0483
--1.9951	0.0553
--1.9276	0.0631
--1.8601	0.0716
--1.7926	0.0809
--1.7251	0.0910
--1.6576	0.1019
--1.5901	0.1135
--1.5226	0.1260
--1.4551	0.1392
--1.3876	0.1530
--1.3201	0.1675
--1.2525	0.1826
--1.1850	0.1981
--1.1175	0.2139
--1.0500	0.2300
--0.9825	0.2462
--0.9150	0.2623
--0.8475	0.2782
--0.7800	0.2937
--0.7125	0.3088
--0.6450	0.3231
--0.5775	0.3366
--0.5099	0.3490
--0.4424	0.3603
--0.3749	0.3703
--0.3074	0.3788
--0.2399	0.3858
--0.1724	0.3912
--0.1049	0.3948
--0.0374	0.3967
-0.0301	0.3968
-0.0976	0.3951
-0.1652	0.3916
-0.2327	0.3865
-0.3002	0.3796
-0.3677	0.3713
-0.4352	0.3614
-0.5027	0.3503
-0.5702	0.3379
-0.6377	0.3246
-0.7052	0.3103
-0.7727	0.2954
-0.8402	0.2799
-0.9078	0.2640
-0.9753	0.2479
-1.0428	0.2317
-1.1103	0.2156
-1.1778	0.1998
-1.2453	0.1842
-1.3128	0.1691
-1.3803	0.1546
-1.4478	0.1406
-1.5153	0.1274
-1.5829	0.1148
-1.6504	0.1031
-1.7179	0.0921
-1.7854	0.0819
-1.8529	0.0725
-1.9204	0.0640
-1.9879	0.0561
-2.0554	0.0490
-2.1229	0.0426
-2.1904	0.0369
-2.2579	0.0318
-2.3255	0.0273
-2.3930	0.0233
-2.4605	0.0198
-2.5280	0.0168
-2.5955	0.0141
-2.6630	0.0119
-2.7305	0.0099
-2.7980	0.0082
-2.8655	0.0068
-2.9330	0.0056
-3.0005	0.0046
-3.0681	0.0038
-3.1356	0.0031
-3.2031	0.0025
-3.2706	0.0020
-3.3381	0.0016
-3.4056	0.0013
-3.4731	0.0010
-3.5406	0.0008
-3.6081	0.0006
-3.6756	0.0005
-Trait4	1
-250	150
-3	2	4	6
-0
--3.2636	0.0025
--3.1926	0.0031
--3.1216	0.0039
--3.0506	0.0048
--2.9796	0.0059
--2.9086	0.0071
--2.8376	0.0086
--2.7666	0.0104
--2.6957	0.0125
--2.6247	0.0150
--2.5537	0.0178
--2.4827	0.0211
--2.4117	0.0248
--2.3407	0.0291
--2.2697	0.0340
--2.1987	0.0395
--2.1277	0.0456
--2.0567	0.0525
--1.9857	0.0601
--1.9148	0.0685
--1.8438	0.0777
--1.7728	0.0877
--1.7018	0.0986
--1.6308	0.1102
--1.5598	0.1226
--1.4888	0.1358
--1.4178	0.1497
--1.3468	0.1643
--1.2758	0.1794
--1.2049	0.1949
--1.1339	0.2108
--1.0629	0.2270
--0.9919	0.2432
--0.9209	0.2593
--0.8499	0.2751
--0.7789	0.2906
--0.7079	0.3055
--0.6369	0.3196
--0.5659	0.3328
--0.4949	0.3448
--0.4240	0.3557
--0.3530	0.3651
--0.2820	0.3730
--0.2110	0.3792
--0.1400	0.3838
--0.0690	0.3865
-0.0020	0.3874
-0.0730	0.3865
-0.1440	0.3838
-0.2150	0.3792
-0.2859	0.3730
-0.3569	0.3651
-0.4279	0.3557
-0.4989	0.3448
-0.5699	0.3328
-0.6409	0.3196
-0.7119	0.3055
-0.7829	0.2906
-0.8539	0.2752
-0.9249	0.2593
-0.9959	0.2432
-1.0668	0.2270
-1.1378	0.2109
-1.2088	0.1950
-1.2798	0.1794
-1.3508	0.1643
-1.4218	0.1498
-1.4928	0.1359
-1.5638	0.1227
-1.6348	0.1102
-1.7058	0.0986
-1.7767	0.0877
-1.8477	0.0777
-1.9187	0.0685
-1.9897	0.0601
-2.0607	0.0525
-2.1317	0.0456
-2.2027	0.0395
-2.2737	0.0340
-2.3447	0.0291
-2.4157	0.0248
-2.4867	0.0211
-2.5576	0.0178
-2.6286	0.0150
-2.6996	0.0125
-2.7706	0.0104
-2.8416	0.0086
-2.9126	0.0071
-2.9836	0.0059
-3.0546	0.0048
-3.1256	0.0039
-3.1966	0.0031
-3.2675	0.0025
-3.3385	0.0020
-3.4095	0.0016
-3.4805	0.0013
-3.5515	0.0010
-3.6225	0.0008
-3.6935	0.0006
-3.7645	0.0005
-3.8355	0.0004
-Trait1	1
-250	150
-1	6
-0
--3.6887	0.0005
--3.6108	0.0006
--3.5329	0.0008
--3.4550	0.0011
--3.3772	0.0014
--3.2993	0.0018
--3.2214	0.0024
--3.1436	0.0030
--3.0657	0.0038
--2.9878	0.0048
--2.9099	0.0060
--2.8321	0.0075
--2.7542	0.0093
--2.6763	0.0115
--2.5984	0.0141
--2.5206	0.0172
--2.4427	0.0208
--2.3648	0.0250
--2.2870	0.0299
--2.2091	0.0356
--2.1312	0.0420
--2.0533	0.0494
--1.9755	0.0577
--1.8976	0.0669
--1.8197	0.0772
--1.7418	0.0886
--1.6640	0.1010
--1.5861	0.1144
--1.5082	0.1289
--1.4303	0.1443
--1.3525	0.1606
--1.2746	0.1777
--1.1967	0.1954
--1.1189	0.2136
--1.0410	0.2322
--0.9631	0.2508
--0.8852	0.2693
--0.8074	0.2874
--0.7295	0.3049
--0.6516	0.3215
--0.5737	0.3371
--0.4959	0.3512
--0.4180	0.3638
--0.3401	0.3746
--0.2623	0.3833
--0.1844	0.3900
--0.1065	0.3944
--0.0286	0.3964
-0.0492	0.3961
-0.1271	0.3934
-0.2050	0.3884
-0.2829	0.3812
-0.3607	0.3719
-0.4386	0.3606
-0.5165	0.3476
-0.5943	0.3331
-0.6722	0.3172
-0.7501	0.3003
-0.8280	0.2826
-0.9058	0.2644
-0.9837	0.2459
-1.0616	0.2272
-1.1395	0.2088
-1.2173	0.1907
-1.2952	0.1731
-1.3731	0.1562
-1.4509	0.1401
-1.5288	0.1250
-1.6067	0.1108
-1.6846	0.0976
-1.7624	0.0855
-1.8403	0.0744
-1.9182	0.0644
-1.9961	0.0554
-2.0739	0.0473
-2.1518	0.0402
-2.2297	0.0340
-2.3075	0.0286
-2.3854	0.0238
-2.4633	0.0198
-2.5412	0.0163
-2.6190	0.0134
-2.6969	0.0109
-2.7748	0.0088
-2.8527	0.0071
-2.9305	0.0057
-3.0084	0.0045
-3.0863	0.0036
-3.1641	0.0028
-3.2420	0.0022
-3.3199	0.0017
-3.3978	0.0013
-3.4756	0.0010
-3.5535	0.0008
-3.6314	0.0006
-3.7093	0.0004
-3.7871	0.0003
-3.8650	0.0002
-3.9429	0.0002
-4.0207	0.0001
-4.0986	0.0001
diff --git a/sourcecodes/data/Eyonet_figure_new.txt b/sourcecodes/data/Eyonet_figure_new.txt
deleted file mode 100644
index b0cb2df5..00000000
--- a/sourcecodes/data/Eyonet_figure_new.txt
+++ /dev/null
@@ -1,552 +0,0 @@
-3	5	
-8
-1200	1200	
-Trait5	0	0
-Geno2	300	0
-Trait6	220	240
-Trait3	100	480
-Geno1	600	0
-Trait2	620	240
-Trait4	420	720
-Trait1	500	480
-Trait5	1
-250	150
-0
-0
--3.2055	0.0025
--3.1368	0.0030
--3.0681	0.0038
--2.9994	0.0046
--2.9308	0.0057
--2.8621	0.0069
--2.7934	0.0083
--2.7247	0.0101
--2.6561	0.0121
--2.5874	0.0144
--2.5187	0.0172
--2.4500	0.0203
--2.3813	0.0240
--2.3127	0.0281
--2.2440	0.0328
--2.1753	0.0381
--2.1066	0.0441
--2.0379	0.0508
--1.9693	0.0582
--1.9006	0.0664
--1.8319	0.0754
--1.7632	0.0852
--1.6945	0.0958
--1.6259	0.1073
--1.5572	0.1195
--1.4885	0.1326
--1.4198	0.1463
--1.3511	0.1608
--1.2825	0.1758
--1.2138	0.1914
--1.1451	0.2074
--1.0764	0.2237
--1.0078	0.2401
--0.9391	0.2565
--0.8704	0.2728
--0.8017	0.2888
--0.7330	0.3042
--0.6644	0.3190
--0.5957	0.3330
--0.5270	0.3460
--0.4583	0.3578
--0.3896	0.3682
--0.3210	0.3772
--0.2523	0.3846
--0.1836	0.3904
--0.1149	0.3944
--0.0462	0.3965
-0.0224	0.3969
-0.0911	0.3953
-0.1598	0.3920
-0.2285	0.3868
-0.2971	0.3800
-0.3658	0.3715
-0.4345	0.3615
-0.5032	0.3502
-0.5719	0.3376
-0.6405	0.3240
-0.7092	0.3095
-0.7779	0.2942
-0.8466	0.2784
-0.9153	0.2622
-0.9839	0.2458
-1.0526	0.2294
-1.1213	0.2130
-1.1900	0.1969
-1.2587	0.1812
-1.3273	0.1659
-1.3960	0.1513
-1.4647	0.1373
-1.5334	0.1240
-1.6021	0.1114
-1.6707	0.0997
-1.7394	0.0888
-1.8081	0.0787
-1.8768	0.0694
-1.9454	0.0610
-2.0141	0.0533
-2.0828	0.0464
-2.1515	0.0401
-2.2202	0.0346
-2.2888	0.0297
-2.3575	0.0253
-2.4262	0.0215
-2.4949	0.0182
-2.5636	0.0153
-2.6322	0.0129
-2.7009	0.0107
-2.7696	0.0089
-2.8383	0.0074
-2.9070	0.0061
-2.9756	0.0050
-3.0443	0.0040
-3.1130	0.0033
-3.1817	0.0026
-3.2503	0.0021
-3.3190	0.0017
-3.3877	0.0014
-3.4564	0.0011
-3.5251	0.0008
-3.5937	0.0007
-3.6624	0.0005
-Geno2	2
-250	150
-0
-3	3	4	7
-1	0.0094
-2	0.9906
-Trait6	1
-250	150
-1	2
-1	4
-1.3424	1.0000
-Trait3	1
-250	150
-2	2	3
-1	7
--2.7825	0.0000
--2.7216	0.0000
--2.6608	0.0000
--2.5999	0.0000
--2.5390	0.0000
--2.4782	0.0000
--2.4173	0.0000
--2.3565	0.0000
--2.2956	0.0000
--2.2347	0.0000
--2.1739	0.0000
--2.1130	0.0000
--2.0521	0.0000
--1.9913	0.0000
--1.9304	0.0000
--1.8695	0.0000
--1.8087	0.0000
--1.7478	0.0000
--1.6870	0.0000
--1.6261	0.0000
--1.5652	0.0000
--1.5044	0.0000
--1.4435	0.0000
--1.3826	0.0000
--1.3218	0.0000
--1.2609	0.0000
--1.2000	0.0000
--1.1392	0.0000
--1.0783	0.0000
--1.0175	0.0000
--0.9566	0.0000
--0.8957	0.0000
--0.8349	0.0000
--0.7740	0.0000
--0.7131	0.0000
--0.6523	0.0000
--0.5914	0.0000
--0.5305	0.0000
--0.4697	0.0000
--0.4088	0.0000
--0.3480	0.0000
--0.2871	0.0000
--0.2262	0.0000
--0.1654	0.0001
--0.1045	0.0003
--0.0436	0.0008
-0.0172	0.0019
-0.0781	0.0042
-0.1389	0.0089
-0.1998	0.0178
-0.2607	0.0338
-0.3215	0.0610
-0.3824	0.1048
-0.4433	0.1712
-0.5041	0.2660
-0.5650	0.3928
-0.6259	0.5516
-0.6867	0.7366
-0.7476	0.9353
-0.8084	1.1292
-0.8693	1.2964
-0.9302	1.4152
-0.9910	1.4690
-1.0519	1.4500
-1.1128	1.3608
-1.1736	1.2144
-1.2345	1.0306
-1.2954	0.8316
-1.3562	0.6380
-1.4171	0.4655
-1.4779	0.3229
-1.5388	0.2130
-1.5997	0.1336
-1.6605	0.0797
-1.7214	0.0452
-1.7823	0.0244
-1.8431	0.0125
-1.9040	0.0061
-1.9649	0.0028
-2.0257	0.0012
-2.0866	0.0005
-2.1474	0.0002
-2.2083	0.0001
-2.2692	0.0000
-2.3300	0.0000
-2.3909	0.0000
-2.4518	0.0000
-2.5126	0.0000
-2.5735	0.0000
-2.6344	0.0000
-2.6952	0.0000
-2.7561	0.0000
-2.8169	0.0000
-2.8778	0.0000
-2.9387	0.0000
-2.9995	0.0000
-3.0604	0.0000
-3.1213	0.0000
-3.1821	0.0000
-3.2430	0.0000
-3.3039	0.0000
-Geno1	2
-250	150
-0
-1	6
-1.0000	1.0000
-Trait2	1
-250	150
-1	5
-2	7	8
--3.0753	0.0000
--3.0078	0.0000
--2.9403	0.0000
--2.8728	0.0000
--2.8053	0.0000
--2.7378	0.0000
--2.6702	0.0000
--2.6027	0.0000
--2.5352	0.0000
--2.4677	0.0000
--2.4002	0.0000
--2.3327	0.0001
--2.2652	0.0001
--2.1977	0.0001
--2.1302	0.0002
--2.0627	0.0002
--1.9951	0.0003
--1.9276	0.0005
--1.8601	0.0006
--1.7926	0.0009
--1.7251	0.0012
--1.6576	0.0016
--1.5901	0.0021
--1.5226	0.0028
--1.4551	0.0037
--1.3876	0.0049
--1.3201	0.0064
--1.2525	0.0082
--1.1850	0.0106
--1.1175	0.0134
--1.0500	0.0170
--0.9825	0.0212
--0.9150	0.0264
--0.8475	0.0325
--0.7800	0.0398
--0.7125	0.0483
--0.6450	0.0583
--0.5775	0.0697
--0.5099	0.0827
--0.4424	0.0974
--0.3749	0.1139
--0.3074	0.1321
--0.2399	0.1520
--0.1724	0.1737
--0.1049	0.1969
--0.0374	0.2215
-0.0301	0.2473
-0.0976	0.2739
-0.1652	0.3012
-0.2327	0.3286
-0.3002	0.3558
-0.3677	0.3823
-0.4352	0.4076
-0.5027	0.4313
-0.5702	0.4529
-0.6377	0.4719
-0.7052	0.4880
-0.7727	0.5008
-0.8402	0.5100
-0.9078	0.5155
-0.9753	0.5170
-1.0428	0.5145
-1.1103	0.5082
-1.1778	0.4981
-1.2453	0.4845
-1.3128	0.4677
-1.3803	0.4480
-1.4478	0.4259
-1.5153	0.4018
-1.5829	0.3761
-1.6504	0.3494
-1.7179	0.3222
-1.7854	0.2948
-1.8529	0.2676
-1.9204	0.2411
-1.9879	0.2156
-2.0554	0.1913
-2.1229	0.1685
-2.1904	0.1472
-2.2579	0.1277
-2.3255	0.1099
-2.3930	0.0938
-2.4605	0.0795
-2.5280	0.0669
-2.5955	0.0558
-2.6630	0.0462
-2.7305	0.0380
-2.7980	0.0310
-2.8655	0.0251
-2.9330	0.0202
-3.0005	0.0161
-3.0681	0.0127
-3.1356	0.0100
-3.2031	0.0078
-3.2706	0.0060
-3.3381	0.0046
-3.4056	0.0035
-3.4731	0.0027
-3.5406	0.0020
-3.6081	0.0015
-3.6756	0.0011
-Trait4	1
-250	150
-3	2	4	6
-0
--3.2636	0.0000
--3.1926	0.0000
--3.1216	0.0000
--3.0506	0.0000
--2.9796	0.0000
--2.9086	0.0000
--2.8376	0.0000
--2.7666	0.0000
--2.6957	0.0000
--2.6247	0.0000
--2.5537	0.0000
--2.4827	0.0000
--2.4117	0.0000
--2.3407	0.0000
--2.2697	0.0000
--2.1987	0.0000
--2.1277	0.0000
--2.0567	0.0000
--1.9857	0.0000
--1.9148	0.0000
--1.8438	0.0000
--1.7728	0.0000
--1.7018	0.0000
--1.6308	0.0000
--1.5598	0.0000
--1.4888	0.0000
--1.4178	0.0000
--1.3468	0.0000
--1.2758	0.0000
--1.2049	0.0000
--1.1339	0.0000
--1.0629	0.0000
--0.9919	0.0000
--0.9209	0.0000
--0.8499	0.0000
--0.7789	0.0000
--0.7079	0.0000
--0.6369	0.0000
--0.5659	0.0000
--0.4949	0.0000
--0.4240	0.0001
--0.3530	0.0002
--0.2820	0.0004
--0.2110	0.0009
--0.1400	0.0019
--0.0690	0.0037
-0.0020	0.0070
-0.0730	0.0129
-0.1440	0.0227
-0.2150	0.0386
-0.2859	0.0630
-0.3569	0.0990
-0.4279	0.1497
-0.4989	0.2176
-0.5699	0.3043
-0.6409	0.4094
-0.7119	0.5299
-0.7829	0.6599
-0.8539	0.7905
-0.9249	0.9110
-0.9959	1.0099
-1.0668	1.0772
-1.1378	1.1052
-1.2088	1.0909
-1.2798	1.0359
-1.3508	0.9463
-1.4218	0.8317
-1.4928	0.7031
-1.5638	0.5719
-1.6348	0.4475
-1.7058	0.3368
-1.7767	0.2439
-1.8477	0.1699
-1.9187	0.1139
-1.9897	0.0734
-2.0607	0.0455
-2.1317	0.0272
-2.2027	0.0156
-2.2737	0.0086
-2.3447	0.0046
-2.4157	0.0023
-2.4867	0.0011
-2.5576	0.0005
-2.6286	0.0002
-2.6996	0.0001
-2.7706	0.0000
-2.8416	0.0000
-2.9126	0.0000
-2.9836	0.0000
-3.0546	0.0000
-3.1256	0.0000
-3.1966	0.0000
-3.2675	0.0000
-3.3385	0.0000
-3.4095	0.0000
-3.4805	0.0000
-3.5515	0.0000
-3.6225	0.0000
-3.6935	0.0000
-3.7645	0.0000
-3.8355	0.0000
-Trait1	1
-250	150
-1	6
-0
--3.6887	0.0001
--3.6108	0.0002
--3.5329	0.0002
--3.4550	0.0003
--3.3772	0.0004
--3.2993	0.0005
--3.2214	0.0007
--3.1436	0.0009
--3.0657	0.0012
--2.9878	0.0016
--2.9099	0.0020
--2.8321	0.0026
--2.7542	0.0034
--2.6763	0.0043
--2.5984	0.0054
--2.5206	0.0068
--2.4427	0.0085
--2.3648	0.0106
--2.2870	0.0131
--2.2091	0.0161
--2.1312	0.0196
--2.0533	0.0237
--1.9755	0.0285
--1.8976	0.0341
--1.8197	0.0406
--1.7418	0.0479
--1.6640	0.0562
--1.5861	0.0656
--1.5082	0.0761
--1.4303	0.0876
--1.3525	0.1003
--1.2746	0.1141
--1.1967	0.1291
--1.1189	0.1450
--1.0410	0.1619
--0.9631	0.1796
--0.8852	0.1981
--0.8074	0.2171
--0.7295	0.2364
--0.6516	0.2558
--0.5737	0.2751
--0.4959	0.2940
--0.4180	0.3123
--0.3401	0.3296
--0.2623	0.3457
--0.1844	0.3603
--0.1065	0.3732
--0.0286	0.3842
-0.0492	0.3930
-0.1271	0.3995
-0.2050	0.4036
-0.2829	0.4052
-0.3607	0.4042
-0.4386	0.4008
-0.5165	0.3949
-0.5943	0.3866
-0.6722	0.3762
-0.7501	0.3637
-0.8280	0.3495
-0.9058	0.3338
-0.9837	0.3167
-1.0616	0.2987
-1.1395	0.2799
-1.2173	0.2607
-1.2952	0.2413
-1.3731	0.2219
-1.4509	0.2028
-1.5288	0.1842
-1.6067	0.1663
-1.6846	0.1492
-1.7624	0.1330
-1.8403	0.1178
-1.9182	0.1037
-1.9961	0.0907
-2.0739	0.0789
-2.1518	0.0681
-2.2297	0.0585
-2.3075	0.0499
-2.3854	0.0423
-2.4633	0.0357
-2.5412	0.0299
-2.6190	0.0248
-2.6969	0.0205
-2.7748	0.0169
-2.8527	0.0138
-2.9305	0.0112
-3.0084	0.0090
-3.0863	0.0072
-3.1641	0.0058
-3.2420	0.0046
-3.3199	0.0036
-3.3978	0.0028
-3.4756	0.0022
-3.5535	0.0017
-3.6314	0.0013
-3.7093	0.0010
-3.7871	0.0007
-3.8650	0.0006
-3.9429	0.0004
-4.0207	0.0003
-4.0986	0.0002
diff --git a/sourcecodes/data/Eyonlevels.txt b/sourcecodes/data/Eyonlevels.txt
deleted file mode 100644
index c8ca46d0..00000000
--- a/sourcecodes/data/Eyonlevels.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-Geno1	2	1
-Geno2	2	1
diff --git a/sourcecodes/data/Eyonnode.txt b/sourcecodes/data/Eyonnode.txt
deleted file mode 100644
index 45a4fb75..00000000
--- a/sourcecodes/data/Eyonnode.txt
+++ /dev/null
@@ -1 +0,0 @@
-8
diff --git a/sourcecodes/data/Eyonrows.txt b/sourcecodes/data/Eyonrows.txt
deleted file mode 100644
index 08839f6b..00000000
--- a/sourcecodes/data/Eyonrows.txt
+++ /dev/null
@@ -1 +0,0 @@
-200
diff --git a/sourcecodes/data/Eyoparent.txt b/sourcecodes/data/Eyoparent.txt
deleted file mode 100644
index b8626c4c..00000000
--- a/sourcecodes/data/Eyoparent.txt
+++ /dev/null
@@ -1 +0,0 @@
-4
diff --git a/sourcecodes/data/Eyostructure_input.txt b/sourcecodes/data/Eyostructure_input.txt
deleted file mode 100644
index 09955440..00000000
--- a/sourcecodes/data/Eyostructure_input.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6	
-0	0	0	1	0	0	0	0	
-0	0	0	0	1	1	0	1	
-0	0	0	0	0	0	0	0	
-0	0	1	0	0	1	0	0	
-0	0	0	0	0	1	0	0	
-0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	
-0	0	0	0	1	0	0	0	
diff --git a/sourcecodes/data/Eyostructure_input_new.txt b/sourcecodes/data/Eyostructure_input_new.txt
deleted file mode 100644
index 8c029bcd..00000000
--- a/sourcecodes/data/Eyostructure_input_new.txt
+++ /dev/null
@@ -1,10 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6	
-0	0	0	1	0	0	0	0	0	
-0	0	0	0	1	1	0	0	0	
-0	0	0	0	0	0	0	0	0	
-0	0	1	0	0	1	0	0	0	
-0	0	0	0	0	1	0	0	0	
-0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	
-0	0	0	0	1	0	0	0	0	
-0	0	0	0	0	0	0	0	0	
diff --git a/sourcecodes/data/Eyostructure_input_temp.txt b/sourcecodes/data/Eyostructure_input_temp.txt
deleted file mode 100644
index fc815603..00000000
--- a/sourcecodes/data/Eyostructure_input_temp.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6	
-0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	1.000000	1.000000	0.000000	1.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	1.000000	0.000000	0.000000	1.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	0.000000	
diff --git a/sourcecodes/data/Eyostructure_old.txt b/sourcecodes/data/Eyostructure_old.txt
deleted file mode 100644
index 2cbd496f..00000000
--- a/sourcecodes/data/Eyostructure_old.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-Geno1	0.3350	0.6650
-Trait2	0.0037	0.0045	0.0055	0.0067	0.0081	0.0097	0.0116	0.0139	0.0165	0.0195	0.0229	0.0268	0.0313	0.0363	0.0420	0.0483	0.0553	0.0631	0.0716	0.0809	0.0910	0.1019	0.1135	0.1260	0.1392	0.1530	0.1675	0.1826	0.1981	0.2139	0.2300	0.2462	0.2623	0.2782	0.2937	0.3088	0.3231	0.3366	0.3490	0.3603	0.3703	0.3788	0.3858	0.3912	0.3948	0.3967	0.3968	0.3951	0.3916	0.3865	0.3796	0.3713	0.3614	0.3503	0.3379	0.3246	0.3103	0.2954	0.2799	0.2640	0.2479	0.2317	0.2156	0.1998	0.1842	0.1691	0.1546	0.1406	0.1274	0.1148	0.1031	0.0921	0.0819	0.0725	0.0640	0.0561	0.0490	0.0426	0.0369	0.0318	0.0273	0.0233	0.0198	0.0168	0.0141	0.0119	0.0099	0.0082	0.0068	0.0056	0.0046	0.0038	0.0031	0.0025	0.0020	0.0016	0.0013	0.0010	0.0008	0.0006	0.0005
-Geno2	0.5700	0.4300
-Trait3	0.0086	0.0101	0.0119	0.0140	0.0163	0.0190	0.0220	0.0254	0.0292	0.0335	0.0383	0.0435	0.0494	0.0558	0.0628	0.0704	0.0786	0.0875	0.0970	0.1072	0.1181	0.1295	0.1415	0.1541	0.1672	0.1807	0.1946	0.2088	0.2232	0.2378	0.2524	0.2668	0.2811	0.2951	0.3086	0.3216	0.3338	0.3453	0.3559	0.3654	0.3738	0.3811	0.3870	0.3916	0.3948	0.3966	0.3969	0.3957	0.3932	0.3892	0.3838	0.3771	0.3692	0.3601	0.3500	0.3389	0.3270	0.3143	0.3010	0.2872	0.2731	0.2587	0.2441	0.2295	0.2150	0.2007	0.1867	0.1730	0.1597	0.1469	0.1346	0.1229	0.1119	0.1014	0.0916	0.0824	0.0739	0.0660	0.0587	0.0521	0.0460	0.0405	0.0355	0.0310	0.0270	0.0234	0.0203	0.0174	0.0150	0.0128	0.0109	0.0092	0.0078	0.0066	0.0055	0.0046	0.0038	0.0032	0.0026	0.0022	0.0018
-Trait4	0.0025	0.0031	0.0039	0.0048	0.0059	0.0071	0.0086	0.0104	0.0125	0.0150	0.0178	0.0211	0.0248	0.0291	0.0340	0.0395	0.0456	0.0525	0.0601	0.0685	0.0777	0.0877	0.0986	0.1102	0.1226	0.1358	0.1497	0.1643	0.1794	0.1949	0.2108	0.2270	0.2432	0.2593	0.2751	0.2906	0.3055	0.3196	0.3328	0.3448	0.3557	0.3651	0.3730	0.3792	0.3838	0.3865	0.3874	0.3865	0.3838	0.3792	0.3730	0.3651	0.3557	0.3448	0.3328	0.3196	0.3055	0.2906	0.2752	0.2593	0.2432	0.2270	0.2109	0.1950	0.1794	0.1643	0.1498	0.1359	0.1227	0.1102	0.0986	0.0877	0.0777	0.0685	0.0601	0.0525	0.0456	0.0395	0.0340	0.0291	0.0248	0.0211	0.0178	0.0150	0.0125	0.0104	0.0086	0.0071	0.0059	0.0048	0.0039	0.0031	0.0025	0.0020	0.0016	0.0013	0.0010	0.0008	0.0006	0.0005	0.0004
-Trait6	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0020	0.0025	0.0031	0.0038	0.0046	0.0057	0.0069	0.0084	0.0101	0.0121	0.0145	0.0172	0.0204	0.0240	0.0282	0.0329	0.0382	0.0441	0.0508	0.0582	0.0664	0.0753	0.0851	0.0957	0.1071	0.1193	0.1323	0.1461	0.1605	0.1755	0.1910	0.2069	0.2232	0.2396	0.2560	0.2722	0.2881	0.3036	0.3184	0.3324	0.3454	0.3572	0.3677	0.3768	0.3843	0.3901	0.3942	0.3965	0.3969	0.3955	0.3923	0.3873	0.3806	0.3722	0.3624	0.3512	0.3387	0.3252	0.3108	0.2956	0.2799	0.2638	0.2474	0.2310	0.2147	0.1986	0.1829	0.1676	0.1529	0.1388	0.1255	0.1129	0.1011	0.0901	0.0799	0.0706	0.0620	0.0542	0.0472	0.0409	0.0353	0.0303	0.0259	0.0221	0.0187	0.0157	0.0132	0.0110	0.0092	0.0076	0.0062	0.0051	0.0042	0.0034	0.0027
-Trait1	0.0005	0.0006	0.0008	0.0011	0.0014	0.0018	0.0024	0.0030	0.0038	0.0048	0.0060	0.0075	0.0093	0.0115	0.0141	0.0172	0.0208	0.0250	0.0299	0.0356	0.0420	0.0494	0.0577	0.0669	0.0772	0.0886	0.1010	0.1144	0.1289	0.1443	0.1606	0.1777	0.1954	0.2136	0.2322	0.2508	0.2693	0.2874	0.3049	0.3215	0.3371	0.3512	0.3638	0.3746	0.3833	0.3900	0.3944	0.3964	0.3961	0.3934	0.3884	0.3812	0.3719	0.3606	0.3476	0.3331	0.3172	0.3003	0.2826	0.2644	0.2459	0.2272	0.2088	0.1907	0.1731	0.1562	0.1401	0.1250	0.1108	0.0976	0.0855	0.0744	0.0644	0.0554	0.0473	0.0402	0.0340	0.0286	0.0238	0.0198	0.0163	0.0134	0.0109	0.0088	0.0071	0.0057	0.0045	0.0036	0.0028	0.0022	0.0017	0.0013	0.0010	0.0008	0.0006	0.0004	0.0003	0.0002	0.0002	0.0001	0.0001
diff --git a/sourcecodes/data/Eyothr.txt b/sourcecodes/data/Eyothr.txt
deleted file mode 100644
index 2eb3c4fe..00000000
--- a/sourcecodes/data/Eyothr.txt
+++ /dev/null
@@ -1 +0,0 @@
-0.5
diff --git a/sourcecodes/data/Eyotype.txt b/sourcecodes/data/Eyotype.txt
deleted file mode 100644
index 285a68af..00000000
--- a/sourcecodes/data/Eyotype.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
-2	2	1	1	1	1	1	1	
diff --git a/sourcecodes/data/Eyovar.txt b/sourcecodes/data/Eyovar.txt
deleted file mode 100644
index 69628e91..00000000
--- a/sourcecodes/data/Eyovar.txt
+++ /dev/null
@@ -1 +0,0 @@
-3	5
\ No newline at end of file
diff --git a/sourcecodes/data/Eyovardata.txt b/sourcecodes/data/Eyovardata.txt
deleted file mode 100644
index 5e92a5e9..00000000
--- a/sourcecodes/data/Eyovardata.txt
+++ /dev/null
@@ -1 +0,0 @@
-1.3424108554384	1
\ No newline at end of file
diff --git a/sourcecodes/data/Eyovarname.txt b/sourcecodes/data/Eyovarname.txt
deleted file mode 100644
index 2b473922..00000000
--- a/sourcecodes/data/Eyovarname.txt
+++ /dev/null
@@ -1 +0,0 @@
-Trait6	Geno1
\ No newline at end of file
diff --git a/sourcecodes/data/Eyowhite.txt b/sourcecodes/data/Eyowhite.txt
deleted file mode 100644
index 83e81b8b..00000000
--- a/sourcecodes/data/Eyowhite.txt
+++ /dev/null
@@ -1 +0,0 @@
-From	To
diff --git a/sourcecodes/data/Swzban.txt b/sourcecodes/data/Swzban.txt
deleted file mode 100644
index fdd12dda..00000000
--- a/sourcecodes/data/Swzban.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-From	To
-Ifih1	rs3664317
-Oas1a	rs3664317
-Parp9	rs3664317
-Dhx58	rs3664317
-Cd1d1	rs3664317
-Irf7	rs3664317
-Oas3	rs3664317
-Pml	rs3664317
-Mx1	rs3664317
-Ifit1	rs3664317
-Trim25	rs3664317
-Oas1g	rs3664317
-Pglyrp3	rs3664317
-Ifih1	rs3664317
-Oas1a	Ifih1
-Parp9	Ifih1
-Dhx58	Ifih1
-Cd1d1	Ifih1
-Irf7	Ifih1
-Oas3	Ifih1
-Pml	Ifih1
-Mx1	Ifih1
-Ifit1	Ifih1
-Trim25	Ifih1
-Oas1g	Ifih1
-Pglyrp3	Ifih1
-Oas1a	rs3664317
-Parp9	rs3664317
-Dhx58	rs3664317
-Cd1d1	rs3664317
-Irf7	rs3664317
-Oas3	rs3664317
-Pml	rs3664317
-Mx1	rs3664317
-Ifit1	rs3664317
-Trim25	rs3664317
-Oas1g	rs3664317
-Pglyrp3	rs3664317
-Oas1a	Ifih1
-Parp9	Ifih1
-Dhx58	Ifih1
-Cd1d1	Ifih1
-Irf7	Ifih1
-Oas3	Ifih1
-Pml	Ifih1
-Mx1	Ifih1
-Ifit1	Ifih1
-Trim25	Ifih1
-Oas1g	Ifih1
-Pglyrp3	Ifih1
diff --git a/sourcecodes/data/Swzcontinuous_input.txt b/sourcecodes/data/Swzcontinuous_input.txt
deleted file mode 100644
index ca8ea1e5..00000000
--- a/sourcecodes/data/Swzcontinuous_input.txt
+++ /dev/null
@@ -1,76 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
-2	1	1	1	1	1	1	1	1	1	1	1	1	1
-1	8.34	9.812	8.774	9.79	9.663	8.27	11.036	7.284	8.286	10.395	8.521	6.186	8.83
-1	8.368	9.738	8.566	9.144	9.484	8.818	11.03	6.977	8.294	10.076	8.529	5.968	8.828
-1	8.178	9.57	8.726	9.575	10.106	8.99	10.878	7.205	8.676	10.036	8.61	5.976	9.024
-1	8.116	9.901	8.904	9.959	9.793	8.336	11.105	7.598	8.316	10.292	8.401	5.814	8.836
-2	8.099	9.68	8.876	10.116	9.771	8.379	11.028	7.438	8.541	10.215	8.32	5.917	9.073
-1	8.262	9.59	8.24	10.088	8.938	7.832	10.486	6.752	7.825	9.908	8.196	6.15	8.446
-1	7.915	9.415	8.308	9.707	9.12	8.702	11.102	7.208	8.243	10.034	7.897	6.06	8.892
-2	8.565	10.002	8.96	9.779	10.322	9.24	11.278	7.644	8.893	10.42	8.773	5.914	9.407
-1	8.189	9.774	8.541	9.939	9.134	7.819	10.766	7.122	8.352	10.113	8.492	6.269	9.055
-1	8.476	9.954	8.908	9.476	9.92	8.764	11.134	7.859	8.788	10.17	8.862	6.226	9.17
-2	8.119	9.946	8.876	9.578	10.02	8.734	11.244	7.85	8.838	10.557	8.56	5.98	9.353
-2	8.305	9.713	8.972	9.789	9.839	8.804	10.948	7.682	8.896	10.181	8.854	5.979	9.567
-2	8.654	10	9.306	9.439	10.457	9.223	10.922	7.082	8.942	10.131	9.162	6.01	9.74
-1	8.105	9.748	8.725	10.119	9.782	8.575	11.113	7.63	8.674	10.355	8.59	6.279	8.908
-1	8.247	9.715	8.829	9.646	9.953	9.668	11.112	7.384	9.221	10.19	8.64	6	9.552
-1	8.511	9.994	9.014	9.89	10.266	8.444	10.599	7.331	9.153	10.012	8.837	6.148	9.023
-2	8.947	10.28	9.483	9.398	11.23	9.86	11.324	8.006	9.772	10.524	9.587	5.865	10.067
-1	8.526	9.685	8.921	9.7	10.126	9.373	11.121	7.497	9.003	10.357	8.156	6.334	9.678
-2	8.06	9.745	9.092	9.278	10.231	8.976	10.998	7.578	9.145	10.283	8.611	6.168	9.413
-2	7.93	9.728	8.694	9.512	9.826	9.016	11.276	7.604	8.767	10.378	8.577	5.963	9.264
-2	8.511	9.686	9.014	8.982	10.508	10.108	11.304	7.441	9.133	10.341	9.04	6.2	9.974
-2	8.645	9.997	8.97	9.443	10.393	9.302	11.409	7.785	8.894	10.552	9.051	5.997	9.412
-2	8.293	9.802	9.001	9.524	10.156	9.263	11.212	7.772	8.581	10.433	8.514	6.093	9.177
-1	7.781	9.712	8.97	9.375	10.12	9.484	11.317	7.347	8.972	10.393	8.352	6.193	9.587
-2	8.465	9.88	8.913	9.816	9.965	8.852	11.138	7.537	8.625	10.426	8.617	6.044	9.556
-2	8.657	10.026	9.189	9.691	10.302	9.268	11.194	7.634	9.143	10.378	9.05	6.067	9.679
-2	7.634	9.606	8.36	9.465	8.41	8.605	11.183	6.942	8.174	9.952	7.478	6.09	9.535
-1	7.669	9.494	8.779	9.552	9.362	8.52	11.024	7.131	8.378	10.391	8.114	6.07	8.851
-2	8.618	10.212	9.433	9.672	10.442	9.21	11.328	8.045	9.322	10.5	9.128	5.994	9.656
-2	8.731	10.27	9.342	9.43	10.697	10.117	11.286	7.749	9.734	10.464	9.322	6.156	9.876
-1	7.554	9.524	8.759	9.93	9.52	8.279	10.82	7.32	8.316	10.31	8.186	6.068	9.046
-1	8.262	9.677	8.75	9.444	10.052	8.634	10.888	7.32	8.562	9.893	8.644	6.212	8.918
-1	7.823	9.628	8.66	9.529	9.578	8.736	11.206	7.171	8.408	10.062	8.111	5.838	9.033
-1	8.28	9.572	8.784	9.428	9.862	9.424	11.27	7.288	8.505	10.174	8.642	6.022	9.313
-2	9.09	10.053	9.599	9.469	11.004	9.882	11.436	8.521	9.814	10.562	9.704	6.044	10.061
-1	8.446	9.989	9.297	9.688	10.577	9.129	11.102	7.718	9.484	10.231	9.072	6.17	9.21
-1	8.668	9.858	9.195	9.385	10.695	9.249	11.028	7.765	9.367	10.319	9.179	6.136	9.563
-2	8.574	10.059	9.281	9.233	10.508	9.247	11.145	8.138	9.505	10.402	9.192	5.992	9.848
-2	8.523	10.052	9.131	9.507	10.418	9.413	11.187	7.641	9.304	10.465	9.063	6.095	9.733
-1	7.987	9.748	8.766	9.578	9.781	8.482	11.279	7.52	8.364	10.141	8.207	6.192	9.133
-2	8.466	9.429	8.946	9.395	9.715	9.071	11.388	7.592	8.078	10.32	8.326	6.108	9.021
-1	7.668	9.694	8.493	10.112	9.561	8.394	10.922	7.26	8.19	10.27	7.916	5.892	8.974
-2	8.379	10.037	9.155	9.683	10.281	9.2	10.913	7.173	9.404	10.381	9.097	6.099	9.714
-2	7.805	9.654	8.454	9.198	10.065	9.468	11.217	6.917	8.43	10.459	8.11	6.068	9.068
-1	7.981	9.8	8.553	9.946	9.862	8.901	11.085	7.214	8.393	10.373	8.19	6.05	9.015
-1	7.746	9.688	8.578	9.901	9.358	7.866	10.928	7.354	7.929	10.233	8.066	5.754	8.883
-1	7.997	9.859	8.795	9.867	9.817	8.734	11.109	7.416	8.67	10.247	8.176	6.143	9.081
-1	8.674	9.689	9.06	9.81	10.544	8.995	11.189	7.781	9.219	10.07	8.98	5.992	9.143
-1	8.088	9.49	8.676	9.456	10.184	8.737	10.998	7.222	8.538	10.192	8.441	6.147	8.55
-1	8.001	9.801	8.669	9.977	9.383	8.274	11.055	7.231	7.913	10.272	8.277	5.931	9.009
-2	8.218	9.458	8.781	9.214	9.66	8.87	10.738	7.241	8.289	10.029	8.612	6.125	9.38
-1	7.684	9.56	8.75	10.077	9.686	8.27	11.102	7.206	8.13	10.212	8.07	6.018	8.984
-2	8.326	9.696	8.88	9.714	10.014	9.08	11.055	7.256	8.494	10.054	8.63	6.177	9.162
-2	8.906	10.106	9.412	9.704	11.06	9.854	11.335	7.799	10.103	10.471	9.25	6.033	9.97
-1	8.073	9.793	8.626	9.879	9.262	8.408	10.844	7.108	8.368	9.959	8.261	6.052	8.916
-2	8.527	10.026	9.143	9.244	10.597	9.566	11.108	7.778	9.748	10.351	9.153	6.055	9.698
-2	8.614	10.05	9.202	9.508	10.66	9.63	11.156	7.758	9.789	10.324	9.068	6.15	9.948
-2	8.522	10.158	8.992	9.684	9.992	8.55	11.125	7.914	8.976	10.311	8.574	5.889	9.566
-1	8.086	9.6	8.522	9.544	9.641	8.514	10.99	7.386	8.506	10.194	8.234	6.02	8.736
-1	7.873	9.596	8.452	9.422	9.278	8.509	10.958	7.057	8.081	9.981	7.969	6.136	8.958
-2	8.371	9.99	8.949	9.931	10.195	8.935	10.83	7.694	9.183	10.493	9.124	6.128	9.396
-2	8.476	9.982	9.115	9.639	10.465	9.833	11.105	8.058	9.9	10.351	9.182	6.05	9.884
-1	8.512	9.995	8.846	9.951	9.561	8.558	10.769	7.584	8.901	10.139	8.769	5.959	9.203
-1	8.358	9.858	8.99	9.981	10.123	9.368	10.989	7.463	9.327	9.93	8.54	6.02	9.543
-1	8.23	9.614	8.806	9.919	9.939	9.108	11.184	7.766	8.793	10.174	8.605	5.972	9.068
-2	8.238	9.802	8.926	9.595	10.062	8.77	11.202	7.712	9.131	10.34	8.57	6.05	9.464
-1	8.533	10.108	9.083	10.214	10.514	8.463	11.008	7.356	9.344	10.196	8.736	6.262	9.257
-1	7.866	9.444	8.223	9.865	8.95	8.539	10.935	6.754	7.748	10.177	7.826	6.29	8.716
-2	8.888	10.031	9.158	9.407	10.8	9.547	11.238	7.659	9.602	10.398	9.337	6.028	9.529
-1	8.026	9.682	8.398	9.824	9.202	8.041	10.703	7.322	8.352	10.209	8.196	6.009	9.001
-2	8.974	10.071	9.451	9.348	11.061	9.686	11.255	8.077	10.101	10.323	9.557	6.006	10.072
-1	8.181	9.432	9.045	9.544	10.651	9.18	10.832	7.419	8.742	9.818	8.546	6.33	9.201
-1	8.137	9.676	9.024	9.37	10.206	9.944	10.985	7.226	8.9	10.362	8.918	6.352	9.367
-
diff --git a/sourcecodes/data/Swzgraphviz.txt b/sourcecodes/data/Swzgraphviz.txt
deleted file mode 100644
index 824e26d5..00000000
--- a/sourcecodes/data/Swzgraphviz.txt
+++ /dev/null
@@ -1,32 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-rs3664317 -> Dhx58;
-rs3664317 -> Cd1d1;
-rs3664317 -> Ifit1;
-rs3664317 -> Oas1g;
-rs3664317 -> Ifih1;
-Parp9 -> Oas1a;
-Dhx58 -> Irf7;
-Dhx58 -> Mx1;
-Dhx58 -> Ifit1;
-Dhx58 -> Trim25;
-Dhx58 -> Oas1g;
-Cd1d1 -> Oas3;
-Cd1d1 -> Trim25;
-Cd1d1 -> Pglyrp3;
-Oas3 -> Pglyrp3;
-Pml -> Oas3;
-Pml -> Pglyrp3;
-Ifit1 -> Irf7;
-Ifit1 -> Mx1;
-Trim25 -> Parp9;
-Trim25 -> Pml;
-Trim25 -> Pglyrp3;
-Ifih1 -> Parp9;
-Ifih1 -> Dhx58;
-Ifih1 -> Cd1d1;
-Ifih1 -> Oas3;
-Ifih1 -> Ifit1;
-Ifih1 -> Trim25;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/Swzgraphviz_new.txt b/sourcecodes/data/Swzgraphviz_new.txt
deleted file mode 100644
index b6938a23..00000000
--- a/sourcecodes/data/Swzgraphviz_new.txt
+++ /dev/null
@@ -1,29 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-rs3664317 -> Dhx58;
-rs3664317 -> Cd1d1;
-rs3664317 -> Ifit1;
-rs3664317 -> Oas1g;
-rs3664317 -> Ifih1;
-Parp9 -> Oas1a;
-Dhx58 -> Irf7;
-Dhx58 -> Mx1;
-Dhx58 -> Ifit1;
-Dhx58 -> Oas1g;
-Cd1d1 -> Oas3;
-Cd1d1 -> Pglyrp3;
-Oas3 -> Pglyrp3;
-Pml -> Oas3;
-Pml -> Pglyrp3;
-Ifit1 -> Irf7;
-Ifit1 -> Mx1;
-Trim25 -> Parp9;
-Trim25 -> Pml;
-Trim25 -> Pglyrp3;
-Ifih1 -> Parp9;
-Ifih1 -> Dhx58;
-Ifih1 -> Cd1d1;
-Ifih1 -> Oas3;
-Ifih1 -> Ifit1;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/Swzk.txt b/sourcecodes/data/Swzk.txt
deleted file mode 100644
index 29d6383b..00000000
--- a/sourcecodes/data/Swzk.txt
+++ /dev/null
@@ -1 +0,0 @@
-100
diff --git a/sourcecodes/data/Swzmap.txt b/sourcecodes/data/Swzmap.txt
deleted file mode 100644
index 325f9a8d..00000000
--- a/sourcecodes/data/Swzmap.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-rs3664317	2	0.501140	1.452055
-Oas1a	1	0.347301	8.281466
-Parp9	1	0.216211	9.804164
-Dhx58	1	0.302026	8.891247
-Cd1d1	1	0.268738	9.643644
-Irf7	1	0.548579	10.009315
-Oas3	1	0.548788	8.957397
-Pml	1	0.190985	11.075425
-Mx1	1	0.336795	7.483137
-Ifit1	1	0.569192	8.828521
-Trim25	1	0.176657	10.255192
-Oas1g	1	0.458134	8.632151
-Pglyrp3	1	0.123345	6.070877
-Ifih1	1	0.387383	9.298137
diff --git a/sourcecodes/data/Swzmapdata.txt b/sourcecodes/data/Swzmapdata.txt
deleted file mode 100644
index 64d3fc62..00000000
--- a/sourcecodes/data/Swzmapdata.txt
+++ /dev/null
@@ -1 +0,0 @@
-rs3664317	Ifih1	Cd1d1	Dhx58	Oas1g	Trim25	Pml	Oas3	Pglyrp3	Parp9	Oas1a	Ifit1	Mx1	Irf7
diff --git a/sourcecodes/data/Swzname.txt b/sourcecodes/data/Swzname.txt
deleted file mode 100644
index 1cc6fe19..00000000
--- a/sourcecodes/data/Swzname.txt
+++ /dev/null
@@ -1 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
diff --git a/sourcecodes/data/Swznet_figure.txt b/sourcecodes/data/Swznet_figure.txt
deleted file mode 100644
index 79f052a0..00000000
--- a/sourcecodes/data/Swznet_figure.txt
+++ /dev/null
@@ -1,1387 +0,0 @@
-14
-1200	1400	
-rs3664317	360	0
-Ifih1	480	175
-Cd1d1	160	350
-Dhx58	560	350
-Oas1g	180	525
-Trim25	480	525
-Pml	0	700
-Oas3	280	875
-Pglyrp3	360	1050
-Parp9	240	700
-Oas1a	680	875
-Ifit1	780	525
-Mx1	480	700
-Irf7	720	700
-rs3664317	2
-250	150
-0
-5	2	3	4	5	12
-1	0.5479
-2	0.4521
-Ifih1	1
-250	150
-1	1
-6	3	4	6	8	10	12
--3.1997	0.0023
--3.1378	0.0028
--3.0758	0.0034
--3.0138	0.0041
--2.9518	0.0050
--2.8899	0.0060
--2.8279	0.0071
--2.7659	0.0085
--2.7039	0.0101
--2.6420	0.0119
--2.5800	0.0140
--2.5180	0.0164
--2.4560	0.0192
--2.3941	0.0223
--2.3321	0.0259
--2.2701	0.0299
--2.2081	0.0343
--2.1462	0.0393
--2.0842	0.0449
--2.0222	0.0510
--1.9602	0.0578
--1.8983	0.0652
--1.8363	0.0733
--1.7743	0.0820
--1.7124	0.0914
--1.6504	0.1015
--1.5884	0.1124
--1.5264	0.1238
--1.4645	0.1359
--1.4025	0.1487
--1.3405	0.1620
--1.2785	0.1758
--1.2166	0.1900
--1.1546	0.2046
--1.0926	0.2195
--1.0306	0.2345
--0.9687	0.2496
--0.9067	0.2647
--0.8447	0.2795
--0.7827	0.2941
--0.7208	0.3082
--0.6588	0.3218
--0.5968	0.3347
--0.5348	0.3467
--0.4729	0.3578
--0.4109	0.3678
--0.3489	0.3766
--0.2870	0.3842
--0.2250	0.3903
--0.1630	0.3951
--0.1010	0.3984
--0.0391	0.4001
-0.0229	0.4003
-0.0849	0.3990
-0.1469	0.3961
-0.2088	0.3917
-0.2708	0.3859
-0.3328	0.3787
-0.3948	0.3702
-0.4567	0.3605
-0.5187	0.3497
-0.5807	0.3379
-0.6427	0.3252
-0.7046	0.3118
-0.7666	0.2978
-0.8286	0.2834
-0.8906	0.2685
-0.9525	0.2535
-1.0145	0.2384
-1.0765	0.2234
-1.1385	0.2084
-1.2004	0.1938
-1.2624	0.1794
-1.3244	0.1655
-1.3863	0.1521
-1.4483	0.1392
-1.5103	0.1269
-1.5723	0.1153
-1.6342	0.1043
-1.6962	0.0940
-1.7582	0.0844
-1.8202	0.0755
-1.8821	0.0672
-1.9441	0.0597
-2.0061	0.0527
-2.0681	0.0464
-2.1300	0.0407
-2.1920	0.0356
-2.2540	0.0310
-2.3160	0.0269
-2.3779	0.0232
-2.4399	0.0200
-2.5019	0.0171
-2.5639	0.0146
-2.6258	0.0124
-2.6878	0.0105
-2.7498	0.0089
-2.8117	0.0075
-2.8737	0.0063
-2.9357	0.0052
-2.9977	0.0043
-Cd1d1	1
-250	150
-2	1	2
-3	6	8	9
--3.4620	0.0010
--3.3962	0.0012
--3.3304	0.0015
--3.2645	0.0019
--3.1987	0.0023
--3.1328	0.0029
--3.0670	0.0035
--3.0011	0.0043
--2.9353	0.0052
--2.8694	0.0064
--2.8036	0.0077
--2.7378	0.0092
--2.6719	0.0110
--2.6061	0.0131
--2.5402	0.0156
--2.4744	0.0184
--2.4085	0.0216
--2.3427	0.0253
--2.2768	0.0295
--2.2110	0.0342
--2.1452	0.0395
--2.0793	0.0455
--2.0135	0.0521
--1.9476	0.0594
--1.8818	0.0674
--1.8159	0.0762
--1.7501	0.0857
--1.6843	0.0960
--1.6184	0.1072
--1.5526	0.1190
--1.4867	0.1316
--1.4209	0.1449
--1.3550	0.1589
--1.2892	0.1734
--1.2233	0.1885
--1.1575	0.2039
--1.0917	0.2197
--1.0258	0.2357
--0.9600	0.2517
--0.8941	0.2677
--0.8283	0.2834
--0.7624	0.2987
--0.6966	0.3135
--0.6308	0.3276
--0.5649	0.3408
--0.4991	0.3530
--0.4332	0.3641
--0.3674	0.3739
--0.3015	0.3823
--0.2357	0.3891
--0.1698	0.3944
--0.1040	0.3980
--0.0382	0.3999
-0.0277	0.4000
-0.0935	0.3984
-0.1594	0.3951
-0.2252	0.3901
-0.2911	0.3835
-0.3569	0.3753
-0.4227	0.3658
-0.4886	0.3549
-0.5544	0.3428
-0.6203	0.3297
-0.6861	0.3158
-0.7520	0.3011
-0.8178	0.2858
-0.8837	0.2702
-0.9495	0.2543
-1.0153	0.2382
-1.0812	0.2223
-1.1470	0.2064
-1.2129	0.1909
-1.2787	0.1758
-1.3446	0.1612
-1.4104	0.1471
-1.4763	0.1337
-1.5421	0.1210
-1.6079	0.1090
-1.6738	0.0978
-1.7396	0.0873
-1.8055	0.0776
-1.8713	0.0687
-1.9372	0.0606
-2.0030	0.0532
-2.0688	0.0465
-2.1347	0.0404
-2.2005	0.0350
-2.2664	0.0302
-2.3322	0.0259
-2.3981	0.0222
-2.4639	0.0189
-2.5298	0.0160
-2.5956	0.0135
-2.6614	0.0113
-2.7273	0.0095
-2.7931	0.0079
-2.8590	0.0066
-2.9248	0.0054
-2.9907	0.0044
-3.0565	0.0036
-3.1223	0.0030
-Dhx58	1
-250	150
-2	1	2
-5	5	6	12	13	14
--3.2125	0.0024
--3.1470	0.0029
--3.0814	0.0035
--3.0159	0.0043
--2.9503	0.0053
--2.8848	0.0064
--2.8192	0.0076
--2.7536	0.0092
--2.6881	0.0110
--2.6225	0.0130
--2.5570	0.0154
--2.4914	0.0182
--2.4258	0.0213
--2.3603	0.0249
--2.2947	0.0290
--2.2292	0.0336
--2.1636	0.0388
--2.0980	0.0446
--2.0325	0.0510
--1.9669	0.0581
--1.9014	0.0659
--1.8358	0.0745
--1.7702	0.0838
--1.7047	0.0938
--1.6391	0.1046
--1.5736	0.1162
--1.5080	0.1284
--1.4425	0.1414
--1.3769	0.1550
--1.3113	0.1692
--1.2458	0.1839
--1.1802	0.1990
--1.1147	0.2145
--1.0491	0.2302
--0.9835	0.2459
--0.9180	0.2617
--0.8524	0.2772
--0.7869	0.2924
--0.7213	0.3071
--0.6557	0.3212
--0.5902	0.3346
--0.5246	0.3469
--0.4591	0.3582
--0.3935	0.3683
--0.3280	0.3771
--0.2624	0.3844
--0.1968	0.3902
--0.1313	0.3944
--0.0657	0.3970
--0.0002	0.3978
-0.0654	0.3970
-0.1310	0.3944
-0.1965	0.3902
-0.2621	0.3845
-0.3276	0.3771
-0.3932	0.3684
-0.4588	0.3583
-0.5243	0.3470
-0.5899	0.3346
-0.6554	0.3213
-0.7210	0.3072
-0.7866	0.2925
-0.8521	0.2773
-0.9177	0.2617
-0.9832	0.2460
-1.0488	0.2302
-1.1143	0.2146
-1.1799	0.1991
-1.2455	0.1840
-1.3110	0.1693
-1.3766	0.1551
-1.4421	0.1415
-1.5077	0.1285
-1.5733	0.1162
-1.6388	0.1047
-1.7044	0.0939
-1.7699	0.0838
-1.8355	0.0745
-1.9011	0.0660
-1.9666	0.0582
-2.0322	0.0510
-2.0977	0.0446
-2.1633	0.0388
-2.2288	0.0337
-2.2944	0.0290
-2.3600	0.0250
-2.4255	0.0213
-2.4911	0.0182
-2.5566	0.0154
-2.6222	0.0130
-2.6878	0.0110
-2.7533	0.0092
-2.8189	0.0077
-2.8844	0.0064
-2.9500	0.0053
-3.0156	0.0043
-3.0811	0.0035
-3.1467	0.0029
-3.2122	0.0024
-3.2778	0.0019
-3.3434	0.0015
-Oas1g	1
-250	150
-2	1	4
-0
--3.5192	0.0009
--3.4507	0.0011
--3.3821	0.0014
--3.3135	0.0018
--3.2449	0.0022
--3.1763	0.0028
--3.1077	0.0034
--3.0391	0.0042
--2.9705	0.0052
--2.9019	0.0063
--2.8334	0.0076
--2.7648	0.0092
--2.6962	0.0111
--2.6276	0.0133
--2.5590	0.0158
--2.4904	0.0187
--2.4218	0.0221
--2.3532	0.0260
--2.2847	0.0304
--2.2161	0.0353
--2.1475	0.0409
--2.0789	0.0472
--2.0103	0.0542
--1.9417	0.0619
--1.8731	0.0704
--1.8045	0.0797
--1.7359	0.0899
--1.6674	0.1008
--1.5988	0.1125
--1.5302	0.1251
--1.4616	0.1383
--1.3930	0.1523
--1.3244	0.1670
--1.2558	0.1822
--1.1872	0.1978
--1.1186	0.2138
--1.0501	0.2300
--0.9815	0.2464
--0.9129	0.2626
--0.8443	0.2787
--0.7757	0.2943
--0.7071	0.3094
--0.6385	0.3238
--0.5699	0.3373
--0.5014	0.3497
--0.4328	0.3609
--0.3642	0.3707
--0.2956	0.3791
--0.2270	0.3858
--0.1584	0.3909
--0.0898	0.3942
--0.0212	0.3956
-0.0474	0.3953
-0.1159	0.3931
-0.1845	0.3891
-0.2531	0.3834
-0.3217	0.3761
-0.3903	0.3672
-0.4589	0.3568
-0.5275	0.3451
-0.5961	0.3323
-0.6646	0.3184
-0.7332	0.3038
-0.8018	0.2884
-0.8704	0.2726
-0.9390	0.2565
-1.0076	0.2401
-1.0762	0.2238
-1.1448	0.2077
-1.2134	0.1918
-1.2819	0.1763
-1.3505	0.1613
-1.4191	0.1469
-1.4877	0.1332
-1.5563	0.1202
-1.6249	0.1080
-1.6935	0.0965
-1.7621	0.0859
-1.8307	0.0761
-1.8992	0.0671
-1.9678	0.0589
-2.0364	0.0514
-2.1050	0.0447
-2.1736	0.0387
-2.2422	0.0334
-2.3108	0.0286
-2.3794	0.0244
-2.4479	0.0208
-2.5165	0.0176
-2.5851	0.0148
-2.6537	0.0124
-2.7223	0.0103
-2.7909	0.0086
-2.8595	0.0071
-2.9281	0.0058
-2.9967	0.0048
-3.0652	0.0039
-3.1338	0.0032
-3.2024	0.0025
-3.2710	0.0020
-3.3396	0.0016
-Trim25	1
-250	150
-3	2	3	4
-3	7	9	10
--3.4748	0.0009
--3.4127	0.0012
--3.3506	0.0014
--3.2885	0.0018
--3.2263	0.0022
--3.1642	0.0026
--3.1021	0.0032
--3.0400	0.0039
--2.9779	0.0047
--2.9158	0.0056
--2.8536	0.0068
--2.7915	0.0081
--2.7294	0.0096
--2.6673	0.0113
--2.6052	0.0133
--2.5431	0.0156
--2.4810	0.0183
--2.4188	0.0213
--2.3567	0.0247
--2.2946	0.0286
--2.2325	0.0329
--2.1704	0.0377
--2.1083	0.0431
--2.0461	0.0490
--1.9840	0.0556
--1.9219	0.0628
--1.8598	0.0706
--1.7977	0.0791
--1.7356	0.0883
--1.6735	0.0982
--1.6113	0.1087
--1.5492	0.1200
--1.4871	0.1319
--1.4250	0.1444
--1.3629	0.1575
--1.3008	0.1711
--1.2386	0.1851
--1.1765	0.1996
--1.1144	0.2144
--1.0523	0.2293
--0.9902	0.2444
--0.9281	0.2594
--0.8660	0.2743
--0.8038	0.2889
--0.7417	0.3031
--0.6796	0.3168
--0.6175	0.3299
--0.5554	0.3422
--0.4933	0.3535
--0.4311	0.3638
--0.3690	0.3730
--0.3069	0.3809
--0.2448	0.3875
--0.1827	0.3927
--0.1206	0.3964
--0.0585	0.3987
-0.0037	0.3993
-0.0658	0.3985
-0.1279	0.3961
-0.1900	0.3922
-0.2521	0.3868
-0.3142	0.3801
-0.3764	0.3720
-0.4385	0.3627
-0.5006	0.3522
-0.5627	0.3408
-0.6248	0.3284
-0.6869	0.3153
-0.7490	0.3015
-0.8112	0.2872
-0.8733	0.2725
-0.9354	0.2576
-0.9975	0.2426
-1.0596	0.2275
-1.1217	0.2126
-1.1839	0.1979
-1.2460	0.1835
-1.3081	0.1695
-1.3702	0.1559
-1.4323	0.1429
-1.4944	0.1304
-1.5565	0.1186
-1.6187	0.1075
-1.6808	0.0970
-1.7429	0.0872
-1.8050	0.0781
-1.8671	0.0696
-1.9292	0.0619
-1.9914	0.0548
-2.0535	0.0483
-2.1156	0.0424
-2.1777	0.0371
-2.2398	0.0323
-2.3019	0.0281
-2.3640	0.0243
-2.4262	0.0209
-2.4883	0.0180
-2.5504	0.0153
-2.6125	0.0131
-2.6746	0.0111
-2.7367	0.0094
-Pml	1
-250	150
-1	6
-2	8	9
--4.0862	0.0001
--4.0165	0.0001
--3.9468	0.0002
--3.8770	0.0002
--3.8073	0.0003
--3.7375	0.0004
--3.6678	0.0005
--3.5980	0.0006
--3.5283	0.0008
--3.4586	0.0010
--3.3888	0.0013
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diff --git a/sourcecodes/data/Swznet_figure_new.txt b/sourcecodes/data/Swznet_figure_new.txt
deleted file mode 100644
index 912d6251..00000000
--- a/sourcecodes/data/Swznet_figure_new.txt
+++ /dev/null
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diff --git a/sourcecodes/data/Swznlevels.txt b/sourcecodes/data/Swznlevels.txt
deleted file mode 100644
index 605579c3..00000000
--- a/sourcecodes/data/Swznlevels.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-rs3664317	1	2
-
diff --git a/sourcecodes/data/Swznnode.txt b/sourcecodes/data/Swznnode.txt
deleted file mode 100644
index 8351c193..00000000
--- a/sourcecodes/data/Swznnode.txt
+++ /dev/null
@@ -1 +0,0 @@
-14
diff --git a/sourcecodes/data/Swznrows.txt b/sourcecodes/data/Swznrows.txt
deleted file mode 100644
index fff0a247..00000000
--- a/sourcecodes/data/Swznrows.txt
+++ /dev/null
@@ -1 +0,0 @@
-74
diff --git a/sourcecodes/data/Swzparent.txt b/sourcecodes/data/Swzparent.txt
deleted file mode 100644
index b8626c4c..00000000
--- a/sourcecodes/data/Swzparent.txt
+++ /dev/null
@@ -1 +0,0 @@
-4
diff --git a/sourcecodes/data/Swzstructure_input.txt b/sourcecodes/data/Swzstructure_input.txt
deleted file mode 100644
index 48837c69..00000000
--- a/sourcecodes/data/Swzstructure_input.txt
+++ /dev/null
@@ -1,15 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1	
-0	0	0	1	1	0	0	0	0	1	0	1	0	1	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	1	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	1	0	0	1	1	1	1	0	0	
-0	0	0	0	0	0	1	0	0	0	1	0	1	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	1	0	
-0	0	0	0	0	0	1	0	0	0	0	0	1	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	1	0	0	1	0	0	0	0	0	
-0	0	1	0	0	0	0	1	0	0	0	0	1	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	1	1	1	0	1	0	0	1	1	0	0	0	
diff --git a/sourcecodes/data/Swzstructure_input_new.txt b/sourcecodes/data/Swzstructure_input_new.txt
deleted file mode 100644
index 52ac8617..00000000
--- a/sourcecodes/data/Swzstructure_input_new.txt
+++ /dev/null
@@ -1,16 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1	
-0	0	0	1	1	0	0	0	0	1	0	1	0	1	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	1	0	0	1	1	0	1	0	0	0	
-0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	
-0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	
-0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	1	1	1	0	1	0	0	1	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
diff --git a/sourcecodes/data/Swzstructure_input_temp.txt b/sourcecodes/data/Swzstructure_input_temp.txt
deleted file mode 100644
index f3589770..00000000
--- a/sourcecodes/data/Swzstructure_input_temp.txt
+++ /dev/null
@@ -1,15 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1	
-0.000000	0.808614	0.000000	1.000000	1.000000	0.000000	0.000000	0.000000	0.250558	1.000000	0.000000	0.960922	0.000000	1.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.596398	0.000000	0.786929	0.055837	0.000000	0.000000	0.590731	0.000000	0.000000	
-0.000000	0.942409	0.000000	0.000000	0.000000	0.018121	0.000000	0.000000	0.000000	0.409269	0.000000	0.401871	0.000000	0.000000	
-0.000000	0.590731	0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	1.000000	1.000000	1.000000	1.000000	0.018396	0.000000	
-0.000000	0.038935	0.000000	0.500000	0.000000	0.036744	1.000000	0.000000	0.000000	0.000000	1.000000	0.039078	1.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.786929	0.164752	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.056298	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.981604	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	0.786929	0.000000	0.000000	0.000000	1.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.290596	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.075670	0.000000	0.000000	0.000000	1.000000	0.213071	0.641848	1.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.526176	1.000000	0.000000	0.000000	0.036744	0.000000	1.000000	0.269815	0.000000	0.000000	0.000000	1.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.750185	0.000000	0.622177	0.636861	0.590731	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.360110	1.000000	1.000000	1.000000	0.018780	1.000000	0.000000	0.000000	1.000000	1.000000	0.348314	0.000000	0.000000	
diff --git a/sourcecodes/data/Swzstructure_old.txt b/sourcecodes/data/Swzstructure_old.txt
deleted file mode 100644
index f0815c7a..00000000
--- a/sourcecodes/data/Swzstructure_old.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-rs3664317	0.5479	0.4521
-Dhx58	0.0024	0.0029	0.0035	0.0043	0.0053	0.0064	0.0076	0.0092	0.0110	0.0130	0.0154	0.0182	0.0213	0.0249	0.0290	0.0336	0.0388	0.0446	0.0510	0.0581	0.0659	0.0745	0.0838	0.0938	0.1046	0.1162	0.1284	0.1414	0.1550	0.1692	0.1839	0.1990	0.2145	0.2302	0.2459	0.2617	0.2772	0.2924	0.3071	0.3212	0.3346	0.3469	0.3582	0.3683	0.3771	0.3844	0.3902	0.3944	0.3970	0.3978	0.3970	0.3944	0.3902	0.3845	0.3771	0.3684	0.3583	0.3470	0.3346	0.3213	0.3072	0.2925	0.2773	0.2617	0.2460	0.2302	0.2146	0.1991	0.1840	0.1693	0.1551	0.1415	0.1285	0.1162	0.1047	0.0939	0.0838	0.0745	0.0660	0.0582	0.0510	0.0446	0.0388	0.0337	0.0290	0.0250	0.0213	0.0182	0.0154	0.0130	0.0110	0.0092	0.0077	0.0064	0.0053	0.0043	0.0035	0.0029	0.0024	0.0019	0.0015
-Cd1d1	0.0010	0.0012	0.0015	0.0019	0.0023	0.0029	0.0035	0.0043	0.0052	0.0064	0.0077	0.0092	0.0110	0.0131	0.0156	0.0184	0.0216	0.0253	0.0295	0.0342	0.0395	0.0455	0.0521	0.0594	0.0674	0.0762	0.0857	0.0960	0.1072	0.1190	0.1316	0.1449	0.1589	0.1734	0.1885	0.2039	0.2197	0.2357	0.2517	0.2677	0.2834	0.2987	0.3135	0.3276	0.3408	0.3530	0.3641	0.3739	0.3823	0.3891	0.3944	0.3980	0.3999	0.4000	0.3984	0.3951	0.3901	0.3835	0.3753	0.3658	0.3549	0.3428	0.3297	0.3158	0.3011	0.2858	0.2702	0.2543	0.2382	0.2223	0.2064	0.1909	0.1758	0.1612	0.1471	0.1337	0.1210	0.1090	0.0978	0.0873	0.0776	0.0687	0.0606	0.0532	0.0465	0.0404	0.0350	0.0302	0.0259	0.0222	0.0189	0.0160	0.0135	0.0113	0.0095	0.0079	0.0066	0.0054	0.0044	0.0036	0.0030
-Ifit1	0.0063	0.0075	0.0089	0.0105	0.0124	0.0145	0.0169	0.0197	0.0228	0.0264	0.0303	0.0347	0.0397	0.0451	0.0511	0.0577	0.0649	0.0728	0.0812	0.0904	0.1002	0.1106	0.1217	0.1333	0.1456	0.1584	0.1717	0.1854	0.1995	0.2138	0.2284	0.2430	0.2576	0.2720	0.2862	0.3001	0.3134	0.3261	0.3381	0.3492	0.3593	0.3684	0.3763	0.3830	0.3883	0.3922	0.3948	0.3958	0.3954	0.3936	0.3902	0.3855	0.3795	0.3721	0.3635	0.3539	0.3432	0.3316	0.3192	0.3061	0.2925	0.2784	0.2641	0.2495	0.2349	0.2203	0.2059	0.1917	0.1778	0.1643	0.1513	0.1388	0.1268	0.1155	0.1047	0.0947	0.0852	0.0765	0.0683	0.0609	0.0540	0.0477	0.0420	0.0369	0.0322	0.0281	0.0244	0.0211	0.0181	0.0156	0.0133	0.0113	0.0096	0.0081	0.0068	0.0057	0.0048	0.0040	0.0033	0.0027	0.0023
-Oas1g	0.0009	0.0011	0.0014	0.0018	0.0022	0.0028	0.0034	0.0042	0.0052	0.0063	0.0076	0.0092	0.0111	0.0133	0.0158	0.0187	0.0221	0.0260	0.0304	0.0353	0.0409	0.0472	0.0542	0.0619	0.0704	0.0797	0.0899	0.1008	0.1125	0.1251	0.1383	0.1523	0.1670	0.1822	0.1978	0.2138	0.2300	0.2464	0.2626	0.2787	0.2943	0.3094	0.3238	0.3373	0.3497	0.3609	0.3707	0.3791	0.3858	0.3909	0.3942	0.3956	0.3953	0.3931	0.3891	0.3834	0.3761	0.3672	0.3568	0.3451	0.3323	0.3184	0.3038	0.2884	0.2726	0.2565	0.2401	0.2238	0.2077	0.1918	0.1763	0.1613	0.1469	0.1332	0.1202	0.1080	0.0965	0.0859	0.0761	0.0671	0.0589	0.0514	0.0447	0.0387	0.0334	0.0286	0.0244	0.0208	0.0176	0.0148	0.0124	0.0103	0.0086	0.0071	0.0058	0.0048	0.0039	0.0032	0.0025	0.0020	0.0016
-Ifih1	0.0023	0.0028	0.0034	0.0041	0.0050	0.0060	0.0071	0.0085	0.0101	0.0119	0.0140	0.0164	0.0192	0.0223	0.0259	0.0299	0.0343	0.0393	0.0449	0.0510	0.0578	0.0652	0.0733	0.0820	0.0914	0.1015	0.1124	0.1238	0.1359	0.1487	0.1620	0.1758	0.1900	0.2046	0.2195	0.2345	0.2496	0.2647	0.2795	0.2941	0.3082	0.3218	0.3347	0.3467	0.3578	0.3678	0.3766	0.3842	0.3903	0.3951	0.3984	0.4001	0.4003	0.3990	0.3961	0.3917	0.3859	0.3787	0.3702	0.3605	0.3497	0.3379	0.3252	0.3118	0.2978	0.2834	0.2685	0.2535	0.2384	0.2234	0.2084	0.1938	0.1794	0.1655	0.1521	0.1392	0.1269	0.1153	0.1043	0.0940	0.0844	0.0755	0.0672	0.0597	0.0527	0.0464	0.0407	0.0356	0.0310	0.0269	0.0232	0.0200	0.0171	0.0146	0.0124	0.0105	0.0089	0.0075	0.0063	0.0052	0.0043
-Parp9	0.0080	0.0094	0.0111	0.0130	0.0152	0.0177	0.0205	0.0237	0.0272	0.0312	0.0357	0.0406	0.0461	0.0521	0.0587	0.0659	0.0737	0.0821	0.0912	0.1009	0.1112	0.1222	0.1337	0.1458	0.1585	0.1716	0.1851	0.1990	0.2132	0.2276	0.2420	0.2565	0.2709	0.2850	0.2988	0.3121	0.3249	0.3369	0.3482	0.3586	0.3679	0.3761	0.3832	0.3889	0.3934	0.3964	0.3981	0.3983	0.3971	0.3945	0.3905	0.3851	0.3785	0.3706	0.3617	0.3516	0.3406	0.3288	0.3163	0.3031	0.2894	0.2754	0.2611	0.2467	0.2322	0.2178	0.2035	0.1895	0.1759	0.1626	0.1498	0.1375	0.1258	0.1146	0.1041	0.0942	0.0849	0.0763	0.0683	0.0609	0.0541	0.0480	0.0423	0.0372	0.0326	0.0285	0.0247	0.0214	0.0185	0.0159	0.0137	0.0117	0.0099	0.0084	0.0071	0.0060	0.0050	0.0042	0.0035	0.0029	0.0024
-Oas1a	0.0034	0.0042	0.0051	0.0061	0.0073	0.0087	0.0104	0.0124	0.0146	0.0172	0.0201	0.0235	0.0273	0.0316	0.0364	0.0417	0.0477	0.0543	0.0616	0.0695	0.0782	0.0876	0.0977	0.1085	0.1201	0.1323	0.1452	0.1586	0.1727	0.1871	0.2020	0.2172	0.2325	0.2479	0.2633	0.2785	0.2933	0.3077	0.3214	0.3344	0.3465	0.3576	0.3675	0.3761	0.3834	0.3892	0.3935	0.3963	0.3974	0.3969	0.3947	0.3910	0.3857	0.3790	0.3708	0.3613	0.3507	0.3389	0.3263	0.3128	0.2986	0.2839	0.2689	0.2536	0.2382	0.2228	0.2075	0.1925	0.1779	0.1637	0.1500	0.1369	0.1245	0.1127	0.1016	0.0912	0.0816	0.0726	0.0644	0.0569	0.0501	0.0439	0.0383	0.0332	0.0288	0.0248	0.0213	0.0182	0.0155	0.0131	0.0111	0.0093	0.0078	0.0065	0.0054	0.0045	0.0037	0.0030	0.0025	0.0020	0.0016
-Irf7	0.0002	0.0003	0.0004	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0021	0.0026	0.0033	0.0040	0.0050	0.0061	0.0075	0.0091	0.0111	0.0133	0.0160	0.0191	0.0226	0.0267	0.0314	0.0367	0.0428	0.0495	0.0570	0.0654	0.0746	0.0846	0.0956	0.1074	0.1201	0.1336	0.1478	0.1628	0.1784	0.1946	0.2111	0.2279	0.2448	0.2617	0.2783	0.2946	0.3102	0.3250	0.3388	0.3514	0.3627	0.3725	0.3806	0.3870	0.3916	0.3942	0.3948	0.3935	0.3903	0.3851	0.3781	0.3694	0.3591	0.3473	0.3343	0.3201	0.3050	0.2892	0.2728	0.2561	0.2392	0.2223	0.2056	0.1891	0.1732	0.1577	0.1430	0.1290	0.1157	0.1033	0.0918	0.0812	0.0714	0.0625	0.0544	0.0472	0.0407	0.0349	0.0298	0.0253	0.0214	0.0180	0.0151	0.0125	0.0104	0.0086	0.0070	0.0057	0.0047	0.0038	0.0030	0.0024
-Mx1	0.0028	0.0035	0.0043	0.0053	0.0066	0.0081	0.0098	0.0119	0.0144	0.0173	0.0207	0.0246	0.0291	0.0342	0.0400	0.0465	0.0539	0.0621	0.0711	0.0811	0.0919	0.1037	0.1164	0.1300	0.1444	0.1595	0.1754	0.1918	0.2086	0.2258	0.2431	0.2604	0.2775	0.2941	0.3102	0.3254	0.3396	0.3526	0.3641	0.3742	0.3824	0.3889	0.3934	0.3959	0.3964	0.3948	0.3911	0.3855	0.3780	0.3688	0.3579	0.3455	0.3318	0.3170	0.3013	0.2849	0.2680	0.2508	0.2335	0.2162	0.1992	0.1826	0.1665	0.1510	0.1363	0.1223	0.1092	0.0970	0.0858	0.0754	0.0660	0.0574	0.0497	0.0428	0.0367	0.0312	0.0265	0.0223	0.0187	0.0156	0.0130	0.0107	0.0088	0.0072	0.0059	0.0047	0.0038	0.0031	0.0024	0.0019	0.0015	0.0012	0.0009	0.0007	0.0006	0.0004	0.0003	0.0002	0.0002	0.0001	0.0001
-Trim25	0.0009	0.0012	0.0014	0.0018	0.0022	0.0026	0.0032	0.0039	0.0047	0.0056	0.0068	0.0081	0.0096	0.0113	0.0133	0.0156	0.0183	0.0213	0.0247	0.0286	0.0329	0.0377	0.0431	0.0490	0.0556	0.0628	0.0706	0.0791	0.0883	0.0982	0.1087	0.1200	0.1319	0.1444	0.1575	0.1711	0.1851	0.1996	0.2144	0.2293	0.2444	0.2594	0.2743	0.2889	0.3031	0.3168	0.3299	0.3422	0.3535	0.3638	0.3730	0.3809	0.3875	0.3927	0.3964	0.3987	0.3993	0.3985	0.3961	0.3922	0.3868	0.3801	0.3720	0.3627	0.3522	0.3408	0.3284	0.3153	0.3015	0.2872	0.2725	0.2576	0.2426	0.2275	0.2126	0.1979	0.1835	0.1695	0.1559	0.1429	0.1304	0.1186	0.1075	0.0970	0.0872	0.0781	0.0696	0.0619	0.0548	0.0483	0.0424	0.0371	0.0323	0.0281	0.0243	0.0209	0.0180	0.0153	0.0131	0.0111	0.0094
-Oas3	0.0017	0.0021	0.0026	0.0032	0.0039	0.0048	0.0059	0.0072	0.0087	0.0104	0.0125	0.0149	0.0177	0.0209	0.0246	0.0289	0.0337	0.0391	0.0452	0.0520	0.0595	0.0679	0.0771	0.0871	0.0980	0.1098	0.1224	0.1358	0.1501	0.1651	0.1808	0.1971	0.2139	0.2311	0.2486	0.2662	0.2837	0.3011	0.3181	0.3345	0.3502	0.3650	0.3787	0.3911	0.4021	0.4116	0.4195	0.4255	0.4297	0.4320	0.4324	0.4308	0.4273	0.4220	0.4148	0.4059	0.3954	0.3835	0.3702	0.3558	0.3405	0.3243	0.3075	0.2903	0.2728	0.2552	0.2377	0.2204	0.2034	0.1869	0.1709	0.1557	0.1411	0.1273	0.1144	0.1023	0.0911	0.0807	0.0712	0.0626	0.0547	0.0476	0.0413	0.0356	0.0306	0.0262	0.0223	0.0189	0.0159	0.0134	0.0112	0.0093	0.0077	0.0064	0.0052	0.0043	0.0035	0.0028	0.0023	0.0018	0.0015
-Pglyrp3	0.0011	0.0014	0.0017	0.0021	0.0026	0.0032	0.0039	0.0047	0.0057	0.0069	0.0083	0.0100	0.0119	0.0141	0.0166	0.0196	0.0229	0.0267	0.0310	0.0359	0.0413	0.0474	0.0541	0.0614	0.0695	0.0783	0.0878	0.0981	0.1091	0.1208	0.1332	0.1462	0.1598	0.1739	0.1885	0.2034	0.2185	0.2337	0.2490	0.2640	0.2788	0.2931	0.3069	0.3199	0.3320	0.3431	0.3530	0.3617	0.3690	0.3748	0.3790	0.3817	0.3827	0.3821	0.3798	0.3759	0.3705	0.3635	0.3552	0.3455	0.3347	0.3228	0.3100	0.2964	0.2822	0.2675	0.2525	0.2373	0.2220	0.2069	0.1919	0.1773	0.1631	0.1493	0.1362	0.1236	0.1118	0.1006	0.0902	0.0804	0.0715	0.0632	0.0557	0.0489	0.0427	0.0371	0.0321	0.0277	0.0238	0.0203	0.0173	0.0147	0.0124	0.0104	0.0087	0.0072	0.0060	0.0050	0.0041	0.0033	0.0027
-Pml	0.0001	0.0001	0.0002	0.0002	0.0003	0.0004	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0020	0.0026	0.0032	0.0040	0.0049	0.0060	0.0073	0.0089	0.0107	0.0129	0.0154	0.0184	0.0218	0.0257	0.0302	0.0353	0.0411	0.0476	0.0548	0.0628	0.0716	0.0813	0.0918	0.1032	0.1155	0.1285	0.1424	0.1570	0.1722	0.1880	0.2043	0.2209	0.2377	0.2546	0.2713	0.2877	0.3036	0.3188	0.3332	0.3466	0.3587	0.3695	0.3787	0.3863	0.3922	0.3962	0.3983	0.3985	0.3967	0.3930	0.3875	0.3802	0.3713	0.3608	0.3489	0.3357	0.3215	0.3064	0.2906	0.2743	0.2576	0.2408	0.2240	0.2073	0.1910	0.1751	0.1597	0.1450	0.1310	0.1178	0.1054	0.0938	0.0831	0.0733	0.0643	0.0562	0.0488	0.0422	0.0363	0.0311	0.0265	0.0225	0.0190	0.0159	0.0133	0.0111	0.0092	0.0076	0.0062
diff --git a/sourcecodes/data/Swzthr.txt b/sourcecodes/data/Swzthr.txt
deleted file mode 100644
index b63ba696..00000000
--- a/sourcecodes/data/Swzthr.txt
+++ /dev/null
@@ -1 +0,0 @@
-0.9
diff --git a/sourcecodes/data/Swztier.txt b/sourcecodes/data/Swztier.txt
deleted file mode 100644
index e71cfdda..00000000
--- a/sourcecodes/data/Swztier.txt
+++ /dev/null
@@ -1 +0,0 @@
-3,Tier1,1,rs3664317,Tier2,1,Ifih1,Tier3,12,Oas1a,Parp9,Dhx58,Cd1d1,Irf7,Oas3,Pml,Mx1,Ifit1,Trim25,Oas1g,Pglyrp3,
\ No newline at end of file
diff --git a/sourcecodes/data/Swztype.txt b/sourcecodes/data/Swztype.txt
deleted file mode 100644
index 1b707710..00000000
--- a/sourcecodes/data/Swztype.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
-2	1	1	1	1	1	1	1	1	1	1	1	1	1	
diff --git a/sourcecodes/data/Swzvar.txt b/sourcecodes/data/Swzvar.txt
deleted file mode 100644
index 73bc1323..00000000
--- a/sourcecodes/data/Swzvar.txt
+++ /dev/null
@@ -1 +0,0 @@
-1	6
\ No newline at end of file
diff --git a/sourcecodes/data/Swzvardata.txt b/sourcecodes/data/Swzvardata.txt
deleted file mode 100644
index 1874ec81..00000000
--- a/sourcecodes/data/Swzvardata.txt
+++ /dev/null
@@ -1 +0,0 @@
-1	-1.444562060943
\ No newline at end of file
diff --git a/sourcecodes/data/Swzvarname.txt b/sourcecodes/data/Swzvarname.txt
deleted file mode 100644
index 5ed21c88..00000000
--- a/sourcecodes/data/Swzvarname.txt
+++ /dev/null
@@ -1 +0,0 @@
-rs3664317	Trim25
\ No newline at end of file
diff --git a/sourcecodes/data/Swzwhite.txt b/sourcecodes/data/Swzwhite.txt
deleted file mode 100644
index 83e81b8b..00000000
--- a/sourcecodes/data/Swzwhite.txt
+++ /dev/null
@@ -1 +0,0 @@
-From	To
diff --git a/sourcecodes/data/evidencemodified b/sourcecodes/data/evidencemodified
deleted file mode 100644
index 9b3f7563..00000000
Binary files a/sourcecodes/data/evidencemodified and /dev/null differ
diff --git a/sourcecodes/data/initialstructure b/sourcecodes/data/initialstructure
deleted file mode 100644
index 9ecf1bc7..00000000
Binary files a/sourcecodes/data/initialstructure and /dev/null differ
diff --git a/sourcecodes/data/newintervention b/sourcecodes/data/newintervention
deleted file mode 100644
index d818a943..00000000
Binary files a/sourcecodes/data/newintervention and /dev/null differ
diff --git a/sourcecodes/data/standardized_data.txt b/sourcecodes/data/standardized_data.txt
deleted file mode 100644
index ac8c5aaf..00000000
--- a/sourcecodes/data/standardized_data.txt
+++ /dev/null
@@ -1,201 +0,0 @@
-Trait5	Geno2	Trait6	Trait3	Geno1	Trait2	Trait4	Trait1	
-1.8453	1	-0.70749	-1.3361	1	1.5443	-0.43784	0.72817
-0.9605	2	0.85158	1.5164	2	-1.1632	1.0263	-0.11444
--0.63336	2	0.53936	1.1602	2	-0.74229	1.4011	-1.5418
-1.3355	1	-1.7216	-0.76715	2	0.12195	-0.66179	0.098918
-0.36111	1	-0.74876	-0.98283	2	-2.0753	-1.2335	-0.99306
--1.177	2	0.51257	0.84261	2	0.065663	1.2658	-0.64706
-0.076305	2	1.5888	1.7606	2	-0.66331	1.4736	0.39036
--0.53841	1	0.11031	-1.5038	2	0.23456	-0.060179	0.14069
--0.59968	2	0.48834	1.0431	2	-0.59377	0.22579	-0.99995
-0.37839	2	1.293	0.49142	2	-1.2855	0.37537	0.50769
--0.98262	2	1.6051	0.57702	1	0.44497	0.92494	1.9399
--0.32154	2	1.0249	0.77512	2	-0.62075	0.32547	1.8131
-0.094471	2	1.0318	1.5671	1	-0.60413	0.75183	-1.4871
--0.2677	1	-1.3762	-0.039045	1	0.61004	-0.20296	-0.34358
-1.45	1	0.22686	-0.18131	2	-0.5462	-0.61255	-0.83466
--0.94296	1	-1.0223	-1.1896	2	-0.4021	-1.2644	-1.2829
--0.65504	1	-2.6825	-1.035	2	0.25776	-1.4615	0.8459
-1.3635	2	1.5647	0.59499	1	1.372	1.0621	0.74488
-0.60321	2	0.68692	1.4714	1	0.81867	1.711	0.90076
--0.5142	1	-1.0962	-1.5522	2	-0.04535	-1.2401	-0.62324
--1.2303	2	0.82027	1.0532	1	-0.12811	1.344	0.60502
-0.84008	1	-0.7159	-0.44987	2	-0.56344	-1.5572	1.0854
-0.47761	2	1.5622	1.2168	2	-0.30596	1.1251	-1.373
--1.3546	1	-0.7484	-0.096654	2	0.03293	0.23078	0.81596
--0.32954	1	-1.6183	-0.57119	2	-0.9399	-1.5734	-0.76397
-0.57841	2	0.24378	0.681	2	-0.7778	1.305	0.77764
-0.11524	1	-0.85367	0.35424	1	2.3096	0.75697	1.7574
-1.1463	1	0.0096586	-0.25741	2	-0.52081	-1.5513	0.645
--1.3926	1	-0.88863	-0.68795	1	0.0060478	-0.43763	0.97176
--0.34841	2	1.0004	0.23941	2	-0.83161	0.87503	-0.88976
-0.79176	2	0.59541	1.0092	2	-1.9591	0.77295	0.31236
--1.7691	1	0.055429	-1.1837	1	1.1172	-0.091192	1.3242
-0.23812	1	-0.13588	-0.98943	2	-0.041159	-0.43704	-0.39798
-1.4262	2	0.46298	1.327	2	0.15808	1.1741	-0.073986
-1.3584	2	1.5511	0.49802	2	-0.96618	-0.037384	0.26962
--0.45407	1	-0.11918	-0.20984	2	-0.84764	0.68704	0.15697
-1.3502	2	1.1228	1.7003	2	-0.34181	1.3601	0.19833
-0.51265	1	0.059243	-0.61724	2	-1.2675	-1.2719	-1.5491
-1.6144	1	-1.6767	-0.4403	1	-0.7614	0.046076	-0.67463
--0.99883	1	-0.76648	0.33667	1	0.97148	-1.1389	-0.1179
-0.24789	2	0.4729	1.0484	2	-0.62124	0.34555	-0.089509
-1.6957	1	0.014711	-1.3474	2	-0.026706	-1.4606	-1.4344
--0.54533	2	0.88108	1.3793	2	-0.29202	1.3706	-1.1715
--1.7381	2	0.16189	0.96739	2	-0.77438	0.96572	1.2346
--0.844	1	-1.0713	-0.50552	1	1.1809	-0.13536	3.0986
--1.8946	2	0.83747	0.55294	2	0.21042	0.78685	-0.41598
--1.2313	2	0.77672	1.7131	2	-0.38666	1.694	-0.79748
--0.7674	1	-1.151	-0.091205	2	0.9644	-0.57897	0.21363
-0.72057	1	-0.34897	-0.95934	2	-1.3832	-0.57841	-0.10753
-1.2095	1	0.5788	-0.77644	1	0.86817	-0.56945	0.13453
-0.09126	2	1.0274	0.59902	2	0.094442	0.30723	1.2562
--1.7398	2	0.67041	0.82202	2	-0.30164	0.94827	-0.94319
--0.66818	2	0.49087	1.2694	2	-0.18615	0.78217	-1.3246
--0.2258	1	-1.4193	-1.44	2	-1.5421	-1.6216	-0.34894
-1.4939	1	0.12307	-0.97417	1	-1.9058	-1.6405	-2.6656
-0.59683	1	-0.27561	-1.5921	2	-0.012339	-1.033	0.22491
-0.32502	2	1.8115	0.59888	2	-0.78178	0.37072	-1.5605
-0.33627	1	-0.54037	-0.092937	2	-0.23801	-0.28432	0.25603
--0.71947	1	-0.96292	-0.87226	1	1.0454	-1.1866	-1.1159
-0.7723	1	-0.74389	-0.31293	1	0.56738	-1.597	0.21894
-1.1117	2	0.22881	0.53378	2	0.28362	0.62928	-0.5678
--0.37072	2	1.1896	1.2033	1	1.7889	1.9867	-1.137
-1.9537	1	-1.2797	-1.1399	2	-0.45995	-1.6282	-0.33916
--1.1043	2	1.0871	2.3039	1	-0.27611	0.615	0.27212
--1.3202	2	0.86019	1.2914	1	0.27461	0.94779	-0.83604
--0.46478	2	1.29	0.43419	2	0.6874	1.6104	-0.36625
--1.1858	1	-1.2069	-0.56475	2	0.18024	-0.54017	0.23692
-0.32802	2	0.87458	1.8613	1	0.40544	1.1088	1.7578
-1.1735	1	-0.66747	-1.6202	2	0.53589	-0.9149	0.45194
--1.16	2	1.0838	0.61868	1	0.72867	1.3378	0.26446
-1.462	1	0.19509	-1.4192	2	0.56635	-0.85302	0.33349
-1.0695	2	0.21919	1.322	1	1.3441	1.1727	0.75993
--0.22703	2	1.1363	0.54703	2	-0.48891	1.2236	-0.91703
-1.3458	1	-0.6068	-1.7825	2	-0.68775	-0.89217	0.99687
--0.091249	2	0.68469	0.60839	2	-0.6527	0.58896	-0.24057
-0.67203	2	0.72395	1.1051	2	-1.4197	0.29802	0.18773
-0.34537	2	1.2845	1.4258	2	-0.6173	1.0233	-0.24272
--1.0761	1	-1.2815	-0.94371	2	-1.4633	-0.69107	-0.87208
--0.20711	2	1.0174	0.69566	2	-0.58432	0.15352	-0.49392
-0.59929	2	1.5069	1.8419	2	-1.4583	-0.031663	0.0051904
--0.11492	2	1.2367	1.2191	2	-0.51421	1.1523	1.8842
-1.2751	1	-0.52411	-0.64346	1	2.0614	-0.0023541	-0.78047
-0.90981	2	1.1284	1.2152	1	2.6756	1.2409	-0.0088196
--1.9542	1	-1.221	-1.4163	1	1.2826	-0.010965	1.0953
-1.7193	2	0.30492	1.2836	1	0.61499	0.56464	0.15416
--0.53199	2	0.23732	0.77552	2	-1.2032	-0.66655	0.098147
-0.036699	1	-1.0483	-1.779	2	0.3525	-0.60395	0.29999
--0.64389	2	-0.082056	0.48348	2	-0.86546	-0.4081	-0.099655
-0.7892	1	0.063117	-0.73251	2	-0.64062	-0.4066	0.12407
--0.92679	1	-1.4966	0.012855	2	0.79099	-0.55856	0.1923
-0.75147	2	0.0035339	0.026413	2	-0.50794	0.29651	-0.27805
-0.21172	1	-1.3492	-0.47335	2	0.23233	-0.70213	-1.863
--0.97409	1	-0.629	-0.4728	2	0.091744	-0.086481	-0.49562
--1.0464	1	-1.6692	-0.8497	1	1.5077	0.095689	1.3064
--0.078054	2	1.7703	0.87897	1	1.6091	1.3305	-0.65244
-1.6149	1	-0.75709	-0.63085	2	-0.77532	-2.2636	-0.59726
--1.1678	2	0.0899	0.58095	1	-0.22151	0.26068	0.51603
--0.098842	1	-0.30237	-0.04093	2	-1.2385	-0.37569	-1.8225
--0.55001	1	-1.0301	-1.7087	1	2.6454	-1.328	0.34932
-1.0482	1	-0.26461	-1.3201	1	1.68	-0.0041651	-0.12149
-0.5008	1	-0.85959	-0.66514	2	-1.6141	0.29161	-0.89114
-0.309	2	1.0744	1.269	2	-0.96467	1.5905	-1.4207
--0.03887	2	1.0667	1.0095	2	-0.089407	0.99929	1.1521
--0.50172	1	-0.99479	-0.54327	1	-0.16208	-1.0551	0.47458
--0.094959	2	2.17	1.7212	1	0.51568	0.53768	-1.2646
--0.5209	1	-1.431	-0.70798	2	-0.4217	0.23091	0.57754
-0.6976	1	-1.2512	-0.50443	2	0.40922	-1.2722	-0.2292
--0.15737	1	-1.3037	-1.2446	2	-0.25	-1.3128	-0.48314
-1.7004	1	-0.093222	0.18072	2	-0.77286	-1.1751	0.70345
--0.34711	1	-0.40996	-0.38877	2	-0.74126	-0.076517	0.71528
-0.63301	1	-1.3066	-1.061	2	-0.020245	-0.47474	0.22126
-0.45593	2	0.98475	1.1245	2	-1.5284	0.87162	-1.1122
--0.074398	1	0.086143	-0.71909	2	-0.72312	-0.58633	-0.1192
-0.5737	2	1.3999	0.41267	2	0.14453	0.30696	0.39156
-0.50652	1	-0.76797	-0.93352	2	-0.537	-0.41761	0.072314
--1.6019	1	0.65979	-0.97526	2	0.28122	-0.88937	0.46691
-0.74414	2	1.6353	1.382	2	0.099487	1.2686	1.3096
--1.3504	1	-1.1309	-0.53372	1	0.13853	-1.3604	1.3258
--0.32328	1	-1.4115	-0.55521	2	-0.39333	-0.7941	1.0533
--0.74323	2	1.7072	0.49329	2	-0.87786	0.48373	-1.3418
-0.8876	1	-1.0691	-0.47533	2	-0.65919	-1.2867	1.3564
--0.26121	2	1.3665	1.3315	1	0.59812	1.5342	-0.51234
--0.52176	2	1.5091	0.71759	2	-0.79433	0.67907	-0.77323
--0.51351	1	-0.99866	-0.96005	1	-0.064251	-0.82275	1.8511
--0.17328	1	0.54034	-1.7709	2	0.38529	-1.362	0.67177
-0.15516	2	1.1328	-0.19576	2	-1.135	1.0527	0.29149
-0.45546	2	0.45829	1.7196	1	0.62149	2.3385	-2.0505
-2.0143	2	1.7214	1.3935	2	-1.973	1.0241	-0.84131
-0.017525	1	-1.3151	-0.89644	2	-0.75598	-1.0529	0.10476
--0.041089	1	-0.071698	-0.33496	2	-0.25915	-0.26742	0.55857
--0.072325	2	0.14302	1.099	2	0.45095	0.51954	-1.5626
-0.9507	1	-0.99789	-1.1502	2	-0.63471	0.61259	0.50045
--1.8153	1	-0.51697	-0.18793	2	-0.58518	-0.41489	-0.79317
--0.37059	1	-0.18087	-0.77008	1	0.14794	-0.66655	0.62321
--0.24334	1	0.033188	-0.22919	2	-1.8202	-0.18936	-0.69098
--0.83923	1	-0.41353	-1.3264	1	1.8901	-1.3452	0.28542
--1.5292	1	-0.28479	-0.49856	2	0.34714	-1.4144	-0.50498
--1.1641	2	0.77391	1.0241	2	-0.77302	0.27655	-2.6887
-2.6624	2	1.7387	1.374	2	0.041422	2.3695	-0.062437
-2.3682	2	1.907	0.94637	1	0.8413	0.76571	-1.6402
-0.31396	1	-1.292	-0.78457	1	-0.31227	-0.84139	-0.22931
--0.87392	1	0.53494	0.55115	2	-0.15179	-0.83441	1.0812
--1.1022	1	-0.57856	-0.21265	1	1.4486	0.11044	-0.38779
-0.42993	1	-1.5502	-0.063309	1	2.2649	-0.59644	2.3369
--1.5011	1	-2.2926	-0.96909	2	-0.40571	-1.1012	0.55992
--1.567	2	0.014611	-0.069863	1	1.3161	0.89287	0.96849
-0.26418	2	0.46242	1.94	2	-1.3016	1.1926	-1.5231
--0.77783	2	1.4946	0.92514	2	-1.1651	1.0425	-1.2692
--0.17339	1	-0.86526	-0.090231	2	-0.09102	-1.3706	0.0046364
-0.11883	2	0.8622	0.94077	2	-0.76414	1.3308	1.4151
-0.12005	1	-0.20542	-0.74536	2	-1.2579	-1.2279	-1.2716
--0.79628	1	-0.022269	-0.16145	2	-0.47715	-0.37329	1.1973
-0.58969	2	1.0063	1.3356	1	0.79987	1.5464	0.32778
-0.11633	2	0.73396	1.1437	1	1.3183	1.0156	-1.9521
--0.88008	1	0.39215	-0.88212	1	0.77879	-0.071244	0.92159
--0.74781	1	-0.31657	-1.2371	2	-1.356	-0.76328	-0.96718
--0.069788	1	0.63495	-0.70214	2	-0.76454	-2.2215	1.7057
-0.3897	1	-0.59859	-0.81633	2	-0.04446	0.84047	-0.75128
-2.202	2	0.77915	0.03712	1	1.8438	1.1743	0.40311
-0.22687	1	-0.40806	-1.0788	2	-0.19213	-0.78118	0.48283
--0.66335	2	1.4808	1.1399	2	-0.033787	0.43484	-0.12131
-0.13303	1	-0.66658	-0.14357	2	-1.073	-0.49395	0.70644
--1.5417	2	0.2473	1.2125	1	1.9083	1.2778	3.085
-0.74601	2	-0.35212	0.88616	2	-0.87675	0.60499	-0.21171
--0.80655	1	-1.1068	-1.3459	2	-0.26122	0.15508	-0.0070062
--0.69135	2	1.0994	1.204	1	2.3161	1.0629	1.4257
-1.6905	1	-0.14242	-0.55749	1	0.359	0.41916	0.53199
--0.77018	1	-1.5065	-0.53604	2	0.19357	0.059861	1.9155
--2.2055	2	1.058	-0.29035	1	1.0301	0.11952	1.1589
--0.70569	1	-0.73004	-1.6228	1	2.1348	-0.42942	0.9784
-1.3633	2	0.65794	0.98061	1	1.3078	0.64345	0.83163
-0.093858	1	-1.6142	-0.92049	2	-0.92394	-1.3444	-0.43257
-1.6603	1	0.037058	0.81538	2	-0.70654	-0.93759	-0.023971
-0.29687	2	0.84923	0.6669	1	0.66467	0.47209	-0.21304
-0.30837	1	-0.8147	-1.3296	2	-1.1736	-1.2252	-0.61307
--1.7779	1	-1.1384	-1.0425	2	-0.69411	-0.39049	-0.48426
--0.35135	1	-0.52672	-1.388	1	0.84612	-1.4625	0.071531
-0.18294	1	-0.96354	-0.6923	2	-0.91232	-0.9204	0.029913
--0.34302	2	1.8167	0.77427	1	0.036232	0.81699	1.0643
--1.0367	1	-0.55158	-0.84582	1	0.67713	-0.66779	-0.43147
-2.6147	1	0.14282	-0.33616	2	-0.83219	-0.17633	-0.13154
--0.59086	1	-1.2139	-0.99552	1	1.9391	-1.1308	0.34104
--0.90208	1	-0.28263	-0.58061	1	0.7467	-0.84617	-0.13434
-1.2668	1	-0.56449	-0.1964	2	0.79248	0.19601	0.41757
-0.75643	2	-0.011136	0.81301	2	0.34117	0.68247	-1.8639
--0.62022	2	0.86997	0.6729	2	-1.1203	0.17657	-1.4252
--0.18946	1	-0.55133	-0.86512	2	-0.83578	-0.40257	-0.03024
--1.5498	2	0.32287	1.184	2	-0.62378	0.80455	0.92802
--0.53493	1	-0.9391	-0.84301	1	1.3501	-0.31379	-0.058359
-0.3655	1	-0.74384	-1.3595	2	1.3067	-0.5247	-1.7346
-0.82879	1	-1.5915	-1.0102	1	1.0708	-0.6468	0.92563
-0.57673	1	-1.4808	-1.0779	2	0.47651	-1.062	0.26109
-0.59244	1	-0.8026	-1.7146	2	-0.020034	-1.3898	-1.5713
-0.44996	2	0.50751	1.0983	1	2.2137	2.8355	0.34885
--0.75132	1	-0.52338	-0.74591	2	-0.84637	-1.6929	-1.6592
--0.1943	2	1.2265	0.4739	2	-0.78558	0.81272	-0.023571
-2.0866	1	-0.19274	0.066839	2	-0.30442	-0.70635	0.8594
--1.3268	1	-1.2952	0.023312	1	1.4432	0.036383	0.89534
--1.4174	1	-0.43139	-0.97617	1	1.9378	0.79311	-0.17685
--0.30469	1	0.072833	-0.069195	1	1.2683	-0.62404	0.25508
diff --git a/sourcecodes/data/temp_evidence_file b/sourcecodes/data/temp_evidence_file
deleted file mode 100644
index b687ceaf..00000000
--- a/sourcecodes/data/temp_evidence_file
+++ /dev/null
@@ -1,36 +0,0 @@
-#!/bin/sh
-# script for execution of deployed applications
-#
-# Sets up the MCR environment for the current $ARCH and executes 
-# the specified command.
-#
-exe_name=$0
-exe_dir=`dirname "$0"`
-echo "------------------------------------------"
-if [ "x$1" = "x" ]; then
-  echo Usage:
-  echo    $0 \<deployedMCRroot\> args
-else
-  echo Setting up environment variables
-  MCRROOT="$1"
-  echo ---
-  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
-	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
-  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-  export LD_LIBRARY_PATH;
-  export XAPPLRESDIR;
-  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
-  shift 1
-  args=
-  while [ $# -gt 0 ]; do
-      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
-      args="${args} ${token}" 
-      shift
-  done
-  "${exe_dir}"/evidencemodified 
\ No newline at end of file
diff --git a/sourcecodes/data/temp_intervention_file b/sourcecodes/data/temp_intervention_file
deleted file mode 100644
index cdf5ce0f..00000000
--- a/sourcecodes/data/temp_intervention_file
+++ /dev/null
@@ -1,36 +0,0 @@
-#!/bin/sh
-# script for execution of deployed applications
-#
-# Sets up the MCR environment for the current $ARCH and executes 
-# the specified command.
-#
-exe_name=$0
-exe_dir=`dirname "$0"`
-echo "------------------------------------------"
-if [ "x$1" = "x" ]; then
-  echo Usage:
-  echo    $0 \<deployedMCRroot\> args
-else
-  echo Setting up environment variables
-  MCRROOT="$1"
-  echo ---
-  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
-	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
-  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-  export LD_LIBRARY_PATH;
-  export XAPPLRESDIR;
-  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
-  shift 1
-  args=
-  while [ $# -gt 0 ]; do
-      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
-      args="${args} ${token}" 
-      shift
-  done
-  "${exe_dir}"/newintervention 
\ No newline at end of file
diff --git a/sourcecodes/data/temp_shell_file_initial_structure b/sourcecodes/data/temp_shell_file_initial_structure
deleted file mode 100644
index 5d1c323d..00000000
--- a/sourcecodes/data/temp_shell_file_initial_structure
+++ /dev/null
@@ -1,36 +0,0 @@
-#!/bin/sh
-# script for execution of deployed applications
-#
-# Sets up the MCR environment for the current $ARCH and executes 
-# the specified command.
-#
-exe_name=$0
-exe_dir=`dirname "$0"`
-echo "------------------------------------------"
-if [ "x$1" = "x" ]; then
-  echo Usage:
-  echo    $0 \<deployedMCRroot\> args
-else
-  echo Setting up environment variables
-  MCRROOT="$1"
-  echo ---
-  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
-	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
-  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-  export LD_LIBRARY_PATH;
-  export XAPPLRESDIR;
-  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
-  shift 1
-  args=
-  while [ $# -gt 0 ]; do
-      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
-      args="${args} ${token}" 
-      shift
-  done
-  "${exe_dir}"/initialstructure 
\ No newline at end of file
-- 
cgit 1.4.1