From 8070dc963753142bb86c4ed698d91fd623ed28e7 Mon Sep 17 00:00:00 2001
From: ziejd2
Date: Thu, 28 Sep 2017 15:04:40 -0500
Subject: BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02
---
 .../example_sci_bk/old/Llurun_evidencemodified.sh  | 38 ++++++++++++++++++++++
 .../example_sci_bk/old/Llurun_initialstructure.sh  | 38 ++++++++++++++++++++++
 2 files changed, 76 insertions(+)
 create mode 100644 sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh
 create mode 100644 sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh

(limited to 'sourcecodes/data/example_sci_bk/old')

diff --git a/sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh b/sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh
new file mode 100644
index 00000000..ee0dde13
--- /dev/null
+++ b/sourcecodes/data/example_sci_bk/old/Llurun_evidencemodified.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/evidencemodified Llu
+fi
+exit
diff --git a/sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh b/sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh
new file mode 100644
index 00000000..adde14dd
--- /dev/null
+++ b/sourcecodes/data/example_sci_bk/old/Llurun_initialstructure.sh
@@ -0,0 +1,38 @@
+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MCR environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
+  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
+  export LD_LIBRARY_PATH;
+  export XAPPLRESDIR;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
+      args="${args} ${token}" 
+      shift
+  done
+  "${exe_dir}"/initialstructure Llu
+fi
+exit
-- 
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