From 9ba1e1cf346771581d02133b73f359be28b323e7 Mon Sep 17 00:00:00 2001 From: ziejd2 Date: Tue, 16 Mar 2021 11:23:09 -0500 Subject: Delete old example files --- .../data/example_sci/LluOyOgrviz_name_file.txt | 6 - sourcecodes/data/example_sci/Lluban.txt | 15 - .../data/example_sci/Llucontinuous_input.txt | 503 --------------------- sourcecodes/data/example_sci/Llugraphviz.txt | 10 - sourcecodes/data/example_sci/Lluk.txt | 1 - sourcecodes/data/example_sci/Llumap.txt | 5 - sourcecodes/data/example_sci/Llumapdata.txt | 1 - sourcecodes/data/example_sci/Lluname.txt | 1 - sourcecodes/data/example_sci/Llunet_figure.txt | 433 ------------------ sourcecodes/data/example_sci/Llunet_figure_new.txt | 433 ------------------ sourcecodes/data/example_sci/Llunlevels.txt | 2 - sourcecodes/data/example_sci/Llunnode.txt | 1 - sourcecodes/data/example_sci/Llunrows.txt | 1 - sourcecodes/data/example_sci/Lluparameters.txt | 21 - sourcecodes/data/example_sci/Lluparent.txt | 1 - sourcecodes/data/example_sci/Llustructure_old.txt | 5 - sourcecodes/data/example_sci/Lluthr.txt | 1 - sourcecodes/data/example_sci/Llutier.txt | 1 - sourcecodes/data/example_sci/Llutype.txt | 2 - sourcecodes/data/example_sci/Lluvar.txt | 1 - sourcecodes/data/example_sci/Lluvardata.txt | 1 - sourcecodes/data/example_sci/Lluvarname.txt | 1 - sourcecodes/data/example_sci/Lluwhite.txt | 1 - .../example_sci/old/Llurun_evidencemodified.sh | 38 -- .../example_sci/old/Llurun_initialstructure.sh | 38 -- 25 files changed, 1523 deletions(-) delete mode 100644 sourcecodes/data/example_sci/LluOyOgrviz_name_file.txt delete mode 100644 sourcecodes/data/example_sci/Lluban.txt delete mode 100644 sourcecodes/data/example_sci/Llucontinuous_input.txt delete mode 100644 sourcecodes/data/example_sci/Llugraphviz.txt delete mode 100644 sourcecodes/data/example_sci/Lluk.txt delete mode 100644 sourcecodes/data/example_sci/Llumap.txt delete mode 100644 sourcecodes/data/example_sci/Llumapdata.txt delete mode 100644 sourcecodes/data/example_sci/Lluname.txt delete mode 100644 sourcecodes/data/example_sci/Llunet_figure.txt delete mode 100644 sourcecodes/data/example_sci/Llunet_figure_new.txt delete mode 100644 sourcecodes/data/example_sci/Llunlevels.txt delete mode 100644 sourcecodes/data/example_sci/Llunnode.txt delete mode 100644 sourcecodes/data/example_sci/Llunrows.txt delete mode 100644 sourcecodes/data/example_sci/Lluparameters.txt delete mode 100644 sourcecodes/data/example_sci/Lluparent.txt delete mode 100644 sourcecodes/data/example_sci/Llustructure_old.txt delete mode 100644 sourcecodes/data/example_sci/Lluthr.txt delete mode 100644 sourcecodes/data/example_sci/Llutier.txt delete mode 100644 sourcecodes/data/example_sci/Llutype.txt delete mode 100644 sourcecodes/data/example_sci/Lluvar.txt delete mode 100644 sourcecodes/data/example_sci/Lluvardata.txt delete mode 100644 sourcecodes/data/example_sci/Lluvarname.txt delete mode 100644 sourcecodes/data/example_sci/Lluwhite.txt delete mode 100644 sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh delete mode 100644 sourcecodes/data/example_sci/old/Llurun_initialstructure.sh (limited to 'sourcecodes/data/example_sci') diff --git a/sourcecodes/data/example_sci/LluOyOgrviz_name_file.txt b/sourcecodes/data/example_sci/LluOyOgrviz_name_file.txt deleted file mode 100644 index b31e4c3c..00000000 --- a/sourcecodes/data/example_sci/LluOyOgrviz_name_file.txt +++ /dev/null @@ -1,6 +0,0 @@ -Genotype -Gene3 -Gene2 -Phenotype -Gene1 - diff --git a/sourcecodes/data/example_sci/Lluban.txt b/sourcecodes/data/example_sci/Lluban.txt deleted file mode 100644 index 38108f00..00000000 --- a/sourcecodes/data/example_sci/Lluban.txt +++ /dev/null @@ -1,15 +0,0 @@ -From To -Gene1 Genotype -Gene2 Genotype -Gene3 Genotype -Phenotype Genotype -Gene1 Genotype -Gene2 Genotype -Gene3 Genotype -Phenotype Gene1 -Phenotype Gene2 -Phenotype Gene3 -Phenotype Genotype -Phenotype Gene1 -Phenotype Gene2 -Phenotype Gene3 diff --git a/sourcecodes/data/example_sci/Llucontinuous_input.txt b/sourcecodes/data/example_sci/Llucontinuous_input.txt deleted file mode 100644 index 79295d7e..00000000 --- a/sourcecodes/data/example_sci/Llucontinuous_input.txt +++ /dev/null @@ -1,503 +0,0 @@ -Genotype Gene3 Gene2 Phenotype Gene1 -2 1 1 1 1 -2 -1.0008 -0.44837 0.21808 -1.196 -1 -0.29368 -0.53043 -1.0893 -0.10136 -2 0.70835 0.72886 -0.18098 -0.42907 -1 0.63703 0.86428 1.7013 0.1425 -1 -1.2402 -0.69712 -1.7002 -0.71634 -1 -1.1952 0.27155 -0.79413 -1.0965 -2 0.62914 0.94265 1.8385 0.6135 -1 -1.91 -2.379 -3.1094 -1.0924 -2 -0.83436 -0.90968 -1.3598 1.335 -1 0.15685 0.4766 1.2891 -1.3309 -2 0.7047 1.0623 1.9811 1.2821 -1 0.59747 -0.023123 0.88555 -0.8844 -1 -1.0557 -1.5548 -1.3016 -0.77687 -2 1.5206 2.0289 0.90366 1.8089 -1 0.65525 -0.47226 -1.1824 0.41863 -2 -0.39262 0.382 -0.64829 0.40947 -2 0.14966 0.22972 0.33797 0.69647 -1 -1.8836 -0.68534 -0.99941 -0.78961 -1 0.48181 0.01241 1.2145 0.16835 -2 1.4673 2.0438 2.4674 2.5234 -1 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-2 -0.77478 -0.39283 -0.0099916 0.64003 -2 0.1672 0.63395 0.41181 1.3391 -2 -0.14637 0.26969 0.82956 0.41884 -2 0.14447 -0.10291 -0.287 0.80367 -1 0.18687 -0.27602 0.27575 -0.63094 -2 1.2428 1.5281 1.2243 3.0052 -1 -0.052875 -0.25162 -0.60352 -1.208 -2 0.6821 0.21045 1.2654 -0.013434 -1 0.26358 0.068284 0.22081 0.066436 -2 -0.62892 -0.053397 0.047075 0.74043 -2 -0.78913 -0.2106 -1.804 0.01624 -1 0.22995 -0.80286 1.3801 -0.92733 -1 -1.9684 -1.1444 -1.8 -2.7373 -2 -0.5569 -0.61626 -0.86638 0.4016 -2 0.1115 1.0784 -0.3657 1.3313 -1 -0.64278 -0.82557 -0.24553 -1.5426 -2 0.20989 0.049778 0.14976 -0.17113 -2 0.93007 1.927 1.9457 1.1498 -1 0.26164 0.15551 -0.033813 0.44309 -2 0.73092 1.0348 0.74128 2.4557 -2 -0.35204 0.606 -0.43078 1.2194 -1 -0.16719 0.40172 0.76466 0.31738 -2 0.97519 1.447 1.6576 0.8312 -1 -0.47105 -0.44196 -1.6032 0.68482 -2 -0.60894 -0.70426 -0.46443 0.86476 -2 -0.19328 0.33885 0.7601 0.61242 -2 0.12697 0.76843 0.73746 0.81747 -1 0.031673 -0.68398 -0.5238 -0.6702 -1 -0.93868 0.50393 0.10229 -0.63522 -1 -1.0264 -1.1855 -1.9957 -2.5259 -2 -0.5916 0.44419 0.014831 0.77302 -1 1.0176 0.82793 0.63908 -0.62945 -1 0.76611 0.14394 0.43542 -0.86403 -2 0.58551 0.21427 1.0034 0.50604 -2 -0.34577 -0.40185 -0.61186 -0.40606 -1 -0.77597 -1.1617 -1.8329 -3.1861 -2 0.068959 0.30321 0.76889 0.34588 -1 -1.2576 -1.5157 -1.1779 -0.94907 -1 -0.83648 0.090435 0.56704 -0.53314 -2 0.88421 1.707 2.6335 2.255 -2 0.55861 0.94463 0.9639 0.8637 -1 -0.18064 -1.0746 0.99446 -2.7845 -1 0.76049 0.26843 1.5167 -0.24873 -2 0.35634 -0.24447 -0.97159 0.11146 -2 1.7377 2.5182 2.4327 3.2303 -1 -1.624 -1.42 -3.435 -1.0498 -1 -1.2389 -1.8164 -1.726 -1.1608 -1 1.0074 -1.0969 -0.0682 -2.9043 -2 0.21432 0.54189 0.15421 1.1324 -2 1.5187 2.458 2.1317 3.8317 -2 1.5893 1.9248 3.0454 2.0655 -1 0.35221 1.6454 1.8029 -0.44455 -1 -0.54894 0.55414 0.35949 -1.3991 -2 -1.1614 -0.48362 -0.73735 -0.49564 -2 1.1159 1.0502 1.0648 0.3003 -2 0.96161 2.1506 1.531 2.1461 -1 -1.2411 -1.0381 -1.1269 -1.1484 -1 0.11049 -0.27275 -0.55964 -0.70906 -2 2.2862 2.1313 2.6027 2.2877 -1 -0.64184 -1.1552 -0.63442 -1.8594 -2 1.9075 1.8567 3.8481 1.9532 -1 -0.63126 -0.85427 -0.53335 0.37771 -2 0.59491 1.4425 1.9929 0.98581 -1 1.5669 0.7286 2.3314 -0.25628 -1 -2.1064 -1.9792 -3.209 -1.9161 -2 0.62872 0.51499 0.21648 1.4204 -1 -0.51532 -0.93122 -0.72578 -1.3459 -1 0.041397 -0.61347 -0.034157 -0.054858 -1 -0.72287 -1.1269 -1.7365 -1.4906 -1 -1.8362 -0.24614 -1.2446 -0.088146 -2 0.97014 1.3422 1.5292 0.77185 -1 -1.8502 -1.2924 -1.9175 -2.5133 -2 0.77748 0.89065 1.1444 0.26583 -1 -0.15405 0.089319 0.59477 0.16672 -2 1.3054 2.3544 3.2492 1.6727 -2 0.92409 1.3741 0.79866 2.0506 -2 -0.69943 -0.67926 -1.8186 0.67307 -1 -3.2806 -1.8577 -3.5456 -1.7004 -2 0.74119 1.0011 -0.11293 2.328 -2 0.73779 1.6924 1.7521 1.2604 -1 -1.3683 -1.7765 -1.5974 -2.2288 -2 0.46839 -0.27199 -0.1524 0.88269 -1 -0.73595 -1.4506 -1.408 -1.9886 -2 -0.2289 -0.5663 -2.0807 -1.4869 -2 -1.0052 0.16268 -0.48156 0.014777 -1 -0.10211 0.087625 -1.1098 -1.0203 -2 -0.090896 -0.057038 -0.69817 0.19942 -2 -0.42191 0.14803 -0.32168 0.049687 -2 0.84872 0.59768 1.9205 1.1233 -1 0.029696 -1.4186 -0.39548 -0.029631 -2 2.0013 1.9999 3.0139 1.6432 -2 1.1324 0.89689 -0.1229 0.15109 -2 0.93618 2.4521 1.7229 3.4367 -1 -1.0037 -1.435 -2.2126 -1.9473 -2 -2.2472 -1.296 -2.3762 -1.9611 -2 0.62477 1.5212 1.2814 1.4403 -2 0.17619 0.488 0.38575 0.19632 -1 0.79693 0.15328 -0.26972 -0.45147 -2 1.3618 1.6805 1.2152 2.1905 -2 -0.36075 1.0698 0.38569 2.5707 -1 -0.55325 -0.17572 -1.0232 -1.134 -2 0.9795 1.3777 0.26495 0.23258 -1 -0.92872 -1.2233 -2.1998 -1.9011 -1 0.47029 -0.06201 -0.34515 -0.57857 -1 -2.6597 -1.5144 -3.0038 -1.949 -2 -0.064474 -0.25394 -0.34794 0.76334 -2 0.52259 0.76325 0.93484 0.060827 -1 0.89037 0.68007 0.50459 -0.88464 -2 1.0031 1.3853 1.7313 0.75303 -2 0.6954 1.3692 0.19298 1.6174 -2 -0.14026 1.1774 0.39386 -0.25913 -2 -1.7796 -1.2709 -2.5775 -0.36996 -2 0.41557 1.9905 1.839 1.1327 -1 0.53878 -0.71974 -0.65395 -0.62597 -2 0.22326 1.3888 0.17221 1.2265 -1 -0.12667 -1.1336 -0.67 -3.6161 -2 1.0183 1.5883 2.2784 1.7509 -1 -2.0415 -2.2483 -2.8307 -3.1148 -2 -1.1513 -0.08575 -0.62876 2.164 -1 0.1961 0.075096 1.9551 0.039445 -2 -0.96925 0.12921 -1.2741 1.8371 -1 0.34137 0.086468 1.4716 0.55236 -1 -0.20756 -0.74846 0.65256 -0.7032 -2 1.1736 1.0214 1.258 1.0002 -2 0.48081 1.3275 0.54443 1.2194 -2 -0.45146 0.38298 0.64902 0.90395 -1 0.75519 -1.0627 -0.35778 -1.7689 -1 -1.4308 -1.0998 -1.0094 -0.66361 -1 -0.097019 0.18029 -9.0423e-07 0.59444 -2 1.3769 2.4872 3.2855 0.98727 -2 0.79201 0.76361 0.88459 3.119 -2 2.5125 2.4776 4.6119 3.966 -1 0.57129 -0.93689 -0.20516 -0.42323 -1 -0.91517 -0.25445 -1.3515 -0.99354 -1 0.17456 -0.98904 -0.49643 -0.8997 -1 -2.2724 -1.6869 -3.8034 -2.0882 -2 -1.8188 -0.57721 -2.4386 0.058963 -2 -0.19227 0.038901 -0.85065 0.6644 -1 -1.5517 -0.57182 -0.9874 -1.4081 -2 -0.47999 0.49667 0.27351 0.6261 -2 0.45041 0.48469 0.55808 2.0659 -1 -1.1302 -1.255 -2.7206 -1.2712 -1 -0.60672 -1.1008 -2.6889 -1.0078 -1 -1.0508 -0.99612 -1.555 -1.0463 -2 0.14434 0.97791 1.2498 1.7391 -2 0.21333 1.6686 1.219 1.8919 -2 -0.35461 -0.64694 -1.3312 -0.10481 -1 -2.0611 -2.1245 -3.6067 -1.6584 -2 -0.3534 0.45962 -0.39991 0.45667 -1 -0.37564 -0.63085 -1.2641 -1.3292 -1 0.30023 -0.20283 0.041852 -0.17139 -2 0.25089 1.0204 1.8084 1.0493 -1 -0.44041 -1.1143 -0.59224 -0.84288 -2 -0.11392 0.5681 -0.054604 0.88897 -1 0.41829 -1.042 -0.0042274 -1.9512 -2 1.4863 2.9227 3.0012 3.1253 -1 -0.60588 -1.1196 -1.4647 -0.92268 -1 -0.10497 -0.74629 -1.8353 -0.35425 -1 -1.2499 -0.83335 -2.4047 -1.4657 -1 -0.51414 -1.4602 -0.54649 -1.0475 -1 0.56956 0.79545 0.86494 -0.59471 -1 -0.64964 -0.78543 -1.9412 -2.2114 -2 1.0044 0.56431 1.2968 1.3807 -1 -1.1924 -0.69401 -0.72828 -1.7252 -2 0.15739 1.0449 0.3742 1.4303 -2 0.49582 1.4353 1.1652 1.5814 - diff --git a/sourcecodes/data/example_sci/Llugraphviz.txt b/sourcecodes/data/example_sci/Llugraphviz.txt deleted file mode 100644 index 88bbd3ba..00000000 --- a/sourcecodes/data/example_sci/Llugraphviz.txt +++ /dev/null @@ -1,10 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -Genotype -> Gene3; -Genotype -> Gene1; -Gene3 -> Phenotype; -Gene2 -> Gene3; -Gene2 -> Phenotype; -Gene1 -> Gene2; -} \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluk.txt b/sourcecodes/data/example_sci/Lluk.txt deleted file mode 100644 index 83b33d23..00000000 --- a/sourcecodes/data/example_sci/Lluk.txt +++ /dev/null @@ -1 +0,0 @@ -1000 diff --git a/sourcecodes/data/example_sci/Llumap.txt b/sourcecodes/data/example_sci/Llumap.txt deleted file mode 100644 index dfe8ca75..00000000 --- a/sourcecodes/data/example_sci/Llumap.txt +++ /dev/null @@ -1,5 +0,0 @@ -Genotype 0.500305 1.514000 -Gene3 1.027261 -0.015284 -Gene2 1.160583 0.138097 -Phenotype 1.554104 0.069005 -Gene1 1.515414 0.174451 diff --git a/sourcecodes/data/example_sci/Llumapdata.txt b/sourcecodes/data/example_sci/Llumapdata.txt deleted file mode 100644 index d684ea06..00000000 --- a/sourcecodes/data/example_sci/Llumapdata.txt +++ /dev/null @@ -1 +0,0 @@ -Genotype Gene1 Gene2 Gene3 Phenotype diff --git a/sourcecodes/data/example_sci/Lluname.txt b/sourcecodes/data/example_sci/Lluname.txt deleted file mode 100644 index f3a1f5bf..00000000 --- a/sourcecodes/data/example_sci/Lluname.txt +++ /dev/null @@ -1 +0,0 @@ -Genotype Gene3 Gene2 Phenotype Gene1 diff --git a/sourcecodes/data/example_sci/Llunet_figure.txt b/sourcecodes/data/example_sci/Llunet_figure.txt deleted file mode 100644 index 2f383b1a..00000000 --- a/sourcecodes/data/example_sci/Llunet_figure.txt +++ /dev/null @@ -1,433 +0,0 @@ -5 -1200 1200 -Genotype 0 0 -Gene1 120 200 -Gene2 0 400 -Gene3 120 600 -Phenotype 0 800 -Genotype 2 -250 150 -0 -2 2 4 -1 0.4860 -2 0.5140 -Gene1 1 -250 150 -1 1 -1 3 --5.1315 0.0009 --5.0254 0.0012 --4.9193 0.0015 --4.8131 0.0019 --4.7070 0.0024 --4.6009 0.0030 --4.4947 0.0037 --4.3886 0.0046 --4.2825 0.0056 --4.1764 0.0069 --4.0702 0.0083 --3.9641 0.0101 --3.8580 0.0121 --3.7518 0.0145 --3.6457 0.0174 --3.5396 0.0206 --3.4334 0.0243 --3.3273 0.0286 --3.2212 0.0335 --3.1151 0.0389 --3.0089 0.0451 --2.9028 0.0520 --2.7967 0.0597 --2.6905 0.0682 --2.5844 0.0775 --2.4783 0.0876 --2.3722 0.0986 --2.2660 0.1105 --2.1599 0.1231 --2.0538 0.1366 --1.9476 0.1508 --1.8415 0.1657 --1.7354 0.1811 --1.6292 0.1971 --1.5231 0.2134 --1.4170 0.2300 --1.3109 0.2467 --1.2047 0.2633 --1.0986 0.2797 --0.9925 0.2956 --0.8863 0.3110 --0.7802 0.3256 --0.6741 0.3392 --0.5680 0.3517 --0.4618 0.3629 --0.3557 0.3726 --0.2496 0.3808 --0.1434 0.3873 --0.0373 0.3920 -0.0688 0.3948 -0.1749 0.3958 -0.2811 0.3948 -0.3872 0.3920 -0.4933 0.3872 -0.5995 0.3807 -0.7056 0.3726 -0.8117 0.3628 -0.9179 0.3516 -1.0240 0.3391 -1.1301 0.3254 -1.2362 0.3108 -1.3424 0.2955 -1.4485 0.2795 -1.5546 0.2631 -1.6608 0.2465 -1.7669 0.2299 -1.8730 0.2133 -1.9791 0.1969 -2.0853 0.1810 -2.1914 0.1655 -2.2975 0.1507 -2.4037 0.1365 -2.5098 0.1230 -2.6159 0.1103 -2.7221 0.0985 -2.8282 0.0875 -2.9343 0.0774 -3.0404 0.0681 -3.1466 0.0596 -3.2527 0.0520 -3.3588 0.0451 -3.4650 0.0389 -3.5711 0.0334 -3.6772 0.0286 -3.7833 0.0243 -3.8895 0.0206 -3.9956 0.0173 -4.1017 0.0145 -4.2079 0.0121 -4.3140 0.0101 -4.4201 0.0083 -4.5263 0.0068 -4.6324 0.0056 -4.7385 0.0046 -4.8446 0.0037 -4.9508 0.0030 -5.0569 0.0024 -5.1630 0.0019 -5.2692 0.0015 -5.3753 0.0012 -5.4814 0.0009 -Gene2 1 -250 150 -1 2 -2 4 5 --4.0240 0.0008 --3.9383 0.0010 --3.8526 0.0013 --3.7669 0.0016 --3.6813 0.0020 --3.5956 0.0026 --3.5099 0.0032 --3.4242 0.0041 --3.3385 0.0050 --3.2528 0.0062 --3.1672 0.0077 --3.0815 0.0094 --2.9958 0.0114 --2.9101 0.0138 --2.8244 0.0166 --2.7387 0.0199 --2.6531 0.0237 --2.5674 0.0281 --2.4817 0.0331 --2.3960 0.0388 --2.3103 0.0453 --2.2246 0.0526 --2.1390 0.0607 --2.0533 0.0696 --1.9676 0.0795 --1.8819 0.0903 --1.7962 0.1021 --1.7106 0.1147 --1.6249 0.1282 --1.5392 0.1426 --1.4535 0.1578 --1.3678 0.1736 --1.2821 0.1900 --1.1965 0.2069 --1.1108 0.2241 --1.0251 0.2414 --0.9394 0.2587 --0.8537 0.2758 --0.7680 0.2924 --0.6824 0.3084 --0.5967 0.3236 --0.5110 0.3377 --0.4253 0.3506 --0.3396 0.3621 --0.2539 0.3719 --0.1683 0.3800 --0.0826 0.3863 -0.0031 0.3905 -0.0888 0.3927 -0.1745 0.3929 -0.2601 0.3910 -0.3458 0.3870 -0.4315 0.3811 -0.5172 0.3732 -0.6029 0.3636 -0.6886 0.3524 -0.7742 0.3397 -0.8599 0.3258 -0.9456 0.3108 -1.0313 0.2949 -1.1170 0.2783 -1.2027 0.2613 -1.2883 0.2440 -1.3740 0.2267 -1.4597 0.2095 -1.5454 0.1925 -1.6311 0.1760 -1.7168 0.1601 -1.8024 0.1449 -1.8881 0.1304 -1.9738 0.1167 -2.0595 0.1039 -2.1452 0.0920 -2.2309 0.0811 -2.3165 0.0711 -2.4022 0.0620 -2.4879 0.0537 -2.5736 0.0464 -2.6593 0.0398 -2.7449 0.0340 -2.8306 0.0288 -2.9163 0.0243 -3.0020 0.0205 -3.0877 0.0171 -3.1734 0.0142 -3.2590 0.0117 -3.3447 0.0097 -3.4304 0.0079 -3.5161 0.0064 -3.6018 0.0052 -3.6875 0.0042 -3.7731 0.0034 -3.8588 0.0027 -3.9445 0.0021 -4.0302 0.0017 -4.1159 0.0013 -4.2016 0.0010 -4.2872 0.0008 -4.3729 0.0006 -4.4586 0.0005 -4.5443 0.0004 -Gene3 1 -250 150 -2 1 3 -1 5 --4.4912 0.0001 --4.4081 0.0001 --4.3250 0.0001 --4.2419 0.0001 --4.1589 0.0002 --4.0758 0.0002 --3.9927 0.0003 --3.9096 0.0004 --3.8266 0.0006 --3.7435 0.0008 --3.6604 0.0010 --3.5773 0.0013 --3.4942 0.0018 --3.4112 0.0023 --3.3281 0.0029 --3.2450 0.0037 --3.1619 0.0047 --3.0789 0.0059 --2.9958 0.0074 --2.9127 0.0092 --2.8296 0.0113 --2.7466 0.0139 --2.6635 0.0170 --2.5804 0.0206 --2.4973 0.0248 --2.4143 0.0297 --2.3312 0.0354 --2.2481 0.0419 --2.1650 0.0493 --2.0820 0.0576 --1.9989 0.0669 --1.9158 0.0773 --1.8327 0.0887 --1.7496 0.1012 --1.6666 0.1147 --1.5835 0.1292 --1.5004 0.1447 --1.4173 0.1610 --1.3343 0.1781 --1.2512 0.1958 --1.1681 0.2139 --1.0850 0.2323 --1.0020 0.2507 --0.9189 0.2688 --0.8358 0.2866 --0.7527 0.3036 --0.6697 0.3197 --0.5866 0.3345 --0.5035 0.3479 --0.4204 0.3597 --0.3373 0.3695 --0.2543 0.3773 --0.1712 0.3828 --0.0881 0.3861 --0.0050 0.3870 -0.0780 0.3855 -0.1611 0.3817 -0.2442 0.3756 -0.3273 0.3673 -0.4103 0.3570 -0.4934 0.3449 -0.5765 0.3311 -0.6596 0.3160 -0.7426 0.2996 -0.8257 0.2824 -0.9088 0.2645 -0.9919 0.2463 -1.0749 0.2279 -1.1580 0.2095 -1.2411 0.1915 -1.3242 0.1740 -1.4073 0.1570 -1.4903 0.1409 -1.5734 0.1256 -1.6565 0.1114 -1.7396 0.0981 -1.8226 0.0859 -1.9057 0.0747 -1.9888 0.0646 -2.0719 0.0555 -2.1549 0.0474 -2.2380 0.0402 -2.3211 0.0340 -2.4042 0.0285 -2.4872 0.0237 -2.5703 0.0197 -2.6534 0.0162 -2.7365 0.0132 -2.8195 0.0108 -2.9026 0.0087 -2.9857 0.0070 -3.0688 0.0056 -3.1519 0.0044 -3.2349 0.0035 -3.3180 0.0027 -3.4011 0.0021 -3.4842 0.0016 -3.5672 0.0013 -3.6503 0.0010 -3.7334 0.0007 -3.8165 0.0006 -Phenotype 1 -250 150 -2 3 4 -0 --5.4596 0.0010 --5.3401 0.0013 --5.2207 0.0016 --5.1012 0.0021 --4.9817 0.0026 --4.8623 0.0033 --4.7428 0.0042 --4.6233 0.0052 --4.5039 0.0065 --4.3844 0.0080 --4.2649 0.0098 --4.1455 0.0120 --4.0260 0.0146 --3.9065 0.0176 --3.7871 0.0212 --3.6676 0.0253 --3.5481 0.0300 --3.4287 0.0354 --3.3092 0.0416 --3.1897 0.0486 --3.0703 0.0564 --2.9508 0.0651 --2.8314 0.0748 --2.7119 0.0854 --2.5924 0.0970 --2.4730 0.1096 --2.3535 0.1230 --2.2340 0.1374 --2.1146 0.1526 --1.9951 0.1685 --1.8756 0.1850 --1.7562 0.2021 --1.6367 0.2195 --1.5172 0.2370 --1.3978 0.2545 --1.2783 0.2718 --1.1588 0.2887 --1.0394 0.3049 --0.9199 0.3202 --0.8004 0.3344 --0.6810 0.3473 --0.5615 0.3587 --0.4420 0.3684 --0.3226 0.3763 --0.2031 0.3822 --0.0836 0.3860 -0.0358 0.3877 -0.1553 0.3872 -0.2748 0.3846 -0.3942 0.3798 -0.5137 0.3731 -0.6332 0.3644 -0.7526 0.3539 -0.8721 0.3418 -0.9916 0.3283 -1.1110 0.3136 -1.2305 0.2979 -1.3500 0.2813 -1.4694 0.2643 -1.5889 0.2468 -1.7084 0.2293 -1.8278 0.2118 -1.9473 0.1945 -2.0668 0.1777 -2.1862 0.1614 -2.3057 0.1458 -2.4252 0.1310 -2.5446 0.1170 -2.6641 0.1039 -2.7836 0.0918 -2.9030 0.0806 -3.0225 0.0704 -3.1420 0.0612 -3.2614 0.0529 -3.3809 0.0454 -3.5004 0.0388 -3.6198 0.0329 -3.7393 0.0278 -3.8588 0.0234 -3.9782 0.0195 -4.0977 0.0162 -4.2171 0.0134 -4.3366 0.0110 -4.4561 0.0090 -4.5755 0.0073 -4.6950 0.0059 -4.8145 0.0047 -4.9339 0.0038 -5.0534 0.0030 -5.1729 0.0024 -5.2923 0.0019 -5.4118 0.0015 -5.5313 0.0011 -5.6507 0.0009 -5.7702 0.0007 -5.8897 0.0005 -6.0091 0.0004 -6.1286 0.0003 -6.2481 0.0002 -6.3675 0.0002 -6.4870 0.0001 diff --git a/sourcecodes/data/example_sci/Llunet_figure_new.txt b/sourcecodes/data/example_sci/Llunet_figure_new.txt deleted file mode 100644 index 7e6f0d97..00000000 --- a/sourcecodes/data/example_sci/Llunet_figure_new.txt +++ /dev/null @@ -1,433 +0,0 @@ -1 -5 -1200 1200 -Genotype 0 0 -Gene1 120 200 -Gene2 0 400 -Gene3 120 600 -Phenotype 0 800 -Genotype 2 -250 150 -0 -2 2 4 -1.0000 1.0000 -Gene1 1 -250 150 -1 1 -1 3 --3.5013 0.0000 --3.4313 0.0000 --3.3613 0.0000 --3.2912 0.0000 --3.2212 0.0000 --3.1512 0.0000 --3.0811 0.0000 --3.0111 0.0000 --2.9411 0.0000 --2.8710 0.0000 --2.8010 0.0000 --2.7310 0.0000 --2.6609 0.0000 --2.5909 0.0000 --2.5209 0.0001 --2.4508 0.0002 --2.3808 0.0004 --2.3108 0.0007 --2.2407 0.0014 --2.1707 0.0026 --2.1007 0.0046 --2.0306 0.0079 --1.9606 0.0133 --1.8906 0.0217 --1.8205 0.0344 --1.7505 0.0529 --1.6805 0.0791 --1.6104 0.1147 --1.5404 0.1615 --1.4704 0.2207 --1.4003 0.2928 --1.3303 0.3771 --1.2603 0.4715 --1.1902 0.5723 --1.1202 0.6743 --1.0502 0.7713 --0.9801 0.8564 --0.9101 0.9232 --0.8401 0.9660 --0.7700 0.9813 --0.7000 0.9676 --0.6300 0.9263 --0.5599 0.8608 --0.4899 0.7765 --0.4199 0.6800 --0.3498 0.5781 --0.2798 0.4771 --0.2098 0.3822 --0.1397 0.2973 --0.0697 0.2244 -0.0003 0.1645 -0.0704 0.1170 -0.1404 0.0808 -0.2104 0.0542 -0.2805 0.0353 -0.3505 0.0223 -0.4205 0.0137 -0.4906 0.0081 -0.5606 0.0047 -0.6306 0.0026 -0.7007 0.0014 -0.7707 0.0008 -0.8407 0.0004 -0.9108 0.0002 -0.9808 0.0001 -1.0508 0.0000 -1.1209 0.0000 -1.1909 0.0000 -1.2609 0.0000 -1.3310 0.0000 -1.4010 0.0000 -1.4710 0.0000 -1.5411 0.0000 -1.6111 0.0000 -1.6811 0.0000 -1.7512 0.0000 -1.8212 0.0000 -1.8912 0.0000 -1.9613 0.0000 -2.0313 0.0000 -2.1013 0.0000 -2.1714 0.0000 -2.2414 0.0000 -2.3114 0.0000 -2.3815 0.0000 -2.4515 0.0000 -2.5215 0.0000 -2.5916 0.0000 -2.6616 0.0000 -2.7316 0.0000 -2.8017 0.0000 -2.8717 0.0000 -2.9417 0.0000 -3.0118 0.0000 -3.0818 0.0000 -3.1518 0.0000 -3.2219 0.0000 -3.2919 0.0000 -3.3619 0.0000 -3.4320 0.0000 -3.5020 0.0000 -Gene2 1 -250 150 -1 2 -2 4 5 --3.5862 0.0000 --3.5124 0.0000 --3.4385 0.0000 --3.3647 0.0000 --3.2909 0.0000 --3.2171 0.0001 --3.1432 0.0001 --3.0694 0.0002 --2.9956 0.0003 --2.9218 0.0005 --2.8479 0.0008 --2.7741 0.0012 --2.7003 0.0018 --2.6264 0.0028 --2.5526 0.0041 --2.4788 0.0060 --2.4050 0.0087 --2.3311 0.0124 --2.2573 0.0175 --2.1835 0.0242 --2.1097 0.0329 --2.0358 0.0441 --1.9620 0.0583 --1.8882 0.0759 --1.8143 0.0974 --1.7405 0.1230 --1.6667 0.1530 --1.5929 0.1874 --1.5190 0.2262 --1.4452 0.2689 --1.3714 0.3148 --1.2976 0.3631 --1.2237 0.4126 --1.1499 0.4617 --1.0761 0.5089 --1.0022 0.5525 --0.9284 0.5908 --0.8546 0.6224 --0.7808 0.6458 --0.7069 0.6600 --0.6331 0.6644 --0.5593 0.6588 --0.4855 0.6434 --0.4116 0.6190 --0.3378 0.5866 --0.2640 0.5475 --0.1901 0.5034 --0.1163 0.4558 --0.0425 0.4066 -0.0313 0.3573 -0.1052 0.3092 -0.1790 0.2636 -0.2528 0.2213 -0.3266 0.1830 -0.4005 0.1491 -0.4743 0.1197 -0.5481 0.0946 -0.6220 0.0736 -0.6958 0.0565 -0.7696 0.0426 -0.8434 0.0317 -0.9173 0.0233 -0.9911 0.0168 -1.0649 0.0119 -1.1387 0.0084 -1.2126 0.0058 -1.2864 0.0039 -1.3602 0.0026 -1.4341 0.0017 -1.5079 0.0011 -1.5817 0.0007 -1.6555 0.0005 -1.7294 0.0003 -1.8032 0.0002 -1.8770 0.0001 -1.9508 0.0001 -2.0247 0.0000 -2.0985 0.0000 -2.1723 0.0000 -2.2462 0.0000 -2.3200 0.0000 -2.3938 0.0000 -2.4676 0.0000 -2.5415 0.0000 -2.6153 0.0000 -2.6891 0.0000 -2.7629 0.0000 -2.8368 0.0000 -2.9106 0.0000 -2.9844 0.0000 -3.0583 0.0000 -3.1321 0.0000 -3.2059 0.0000 -3.2797 0.0000 -3.3536 0.0000 -3.4274 0.0000 -3.5012 0.0000 -3.5750 0.0000 -3.6489 0.0000 -3.7227 0.0000 -3.7965 0.0000 -Gene3 1 -250 150 -2 1 3 -1 5 --4.3571 0.0002 --4.2762 0.0002 --4.1954 0.0003 --4.1145 0.0004 --4.0336 0.0005 --3.9527 0.0007 --3.8719 0.0010 --3.7910 0.0013 --3.7101 0.0017 --3.6293 0.0022 --3.5484 0.0028 --3.4675 0.0036 --3.3866 0.0046 --3.3058 0.0059 --3.2249 0.0074 --3.1440 0.0093 --3.0632 0.0115 --2.9823 0.0143 --2.9014 0.0175 --2.8205 0.0214 --2.7397 0.0260 --2.6588 0.0313 --2.5779 0.0374 --2.4971 0.0445 --2.4162 0.0526 --2.3353 0.0617 --2.2544 0.0719 --2.1736 0.0833 --2.0927 0.0958 --2.0118 0.1095 --1.9310 0.1243 --1.8501 0.1403 --1.7692 0.1572 --1.6883 0.1750 --1.6075 0.1936 --1.5266 0.2127 --1.4457 0.2322 --1.3648 0.2518 --1.2840 0.2713 --1.2031 0.2904 --1.1222 0.3088 --1.0414 0.3263 --0.9605 0.3424 --0.8796 0.3570 --0.7987 0.3698 --0.7179 0.3806 --0.6370 0.3890 --0.5561 0.3951 --0.4753 0.3987 --0.3944 0.3996 --0.3135 0.3980 --0.2326 0.3937 --0.1518 0.3869 --0.0709 0.3778 -0.0100 0.3665 -0.0908 0.3532 -0.1717 0.3381 -0.2526 0.3216 -0.3335 0.3039 -0.4143 0.2852 -0.4952 0.2660 -0.5761 0.2464 -0.6569 0.2268 -0.7378 0.2074 -0.8187 0.1884 -0.8996 0.1700 -0.9804 0.1524 -1.0613 0.1358 -1.1422 0.1201 -1.2230 0.1056 -1.3039 0.0922 -1.3848 0.0800 -1.4657 0.0690 -1.5465 0.0591 -1.6274 0.0502 -1.7083 0.0425 -1.7891 0.0357 -1.8700 0.0297 -1.9509 0.0246 -2.0318 0.0203 -2.1126 0.0166 -2.1935 0.0135 -2.2744 0.0109 -2.3552 0.0087 -2.4361 0.0070 -2.5170 0.0055 -2.5979 0.0043 -2.6787 0.0034 -2.7596 0.0026 -2.8405 0.0020 -2.9213 0.0015 -3.0022 0.0012 -3.0831 0.0009 -3.1640 0.0007 -3.2448 0.0005 -3.3257 0.0004 -3.4066 0.0003 -3.4874 0.0002 -3.5683 0.0001 -3.6492 0.0001 -3.7301 0.0001 -Phenotype 1 -250 150 -2 3 4 -0 --3.5574 0.0004 --3.4806 0.0006 --3.4037 0.0008 --3.3268 0.0012 --3.2499 0.0016 --3.1731 0.0022 --3.0962 0.0030 --3.0193 0.0040 --2.9425 0.0054 --2.8656 0.0071 --2.7887 0.0093 --2.7118 0.0121 --2.6350 0.0155 --2.5581 0.0198 --2.4812 0.0250 --2.4044 0.0313 --2.3275 0.0389 --2.2506 0.0479 --2.1737 0.0584 --2.0969 0.0706 --2.0200 0.0846 --1.9431 0.1005 --1.8663 0.1184 --1.7894 0.1381 --1.7125 0.1597 --1.6356 0.1831 --1.5588 0.2081 --1.4819 0.2343 --1.4050 0.2615 --1.3282 0.2893 --1.2513 0.3173 --1.1744 0.3448 --1.0975 0.3714 --1.0207 0.3966 --0.9438 0.4197 --0.8669 0.4402 --0.7901 0.4576 --0.7132 0.4716 --0.6363 0.4816 --0.5594 0.4875 --0.4826 0.4891 --0.4057 0.4864 --0.3288 0.4794 --0.2520 0.4684 --0.1751 0.4535 --0.0982 0.4353 --0.0213 0.4140 -0.0555 0.3904 -0.1324 0.3648 -0.2093 0.3379 -0.2861 0.3102 -0.3630 0.2822 -0.4399 0.2545 -0.5168 0.2275 -0.5936 0.2016 -0.6705 0.1770 -0.7474 0.1541 -0.8242 0.1329 -0.9011 0.1136 -0.9780 0.0963 -1.0549 0.0809 -1.1317 0.0673 -1.2086 0.0556 -1.2855 0.0455 -1.3623 0.0368 -1.4392 0.0296 -1.5161 0.0236 -1.5930 0.0186 -1.6698 0.0146 -1.7467 0.0113 -1.8236 0.0087 -1.9004 0.0066 -1.9773 0.0050 -2.0542 0.0037 -2.1311 0.0028 -2.2079 0.0020 -2.2848 0.0015 -2.3617 0.0011 -2.4385 0.0008 -2.5154 0.0005 -2.5923 0.0004 -2.6692 0.0003 -2.7460 0.0002 -2.8229 0.0001 -2.8998 0.0001 -2.9766 0.0001 -3.0535 0.0000 -3.1304 0.0000 -3.2073 0.0000 -3.2841 0.0000 -3.3610 0.0000 -3.4379 0.0000 -3.5147 0.0000 -3.5916 0.0000 -3.6685 0.0000 -3.7454 0.0000 -3.8222 0.0000 -3.8991 0.0000 -3.9760 0.0000 -4.0528 0.0000 -4.1297 0.0000 diff --git a/sourcecodes/data/example_sci/Llunlevels.txt b/sourcecodes/data/example_sci/Llunlevels.txt deleted file mode 100644 index 714e56bd..00000000 --- a/sourcecodes/data/example_sci/Llunlevels.txt +++ /dev/null @@ -1,2 +0,0 @@ -Genotype 1 2 - diff --git a/sourcecodes/data/example_sci/Llunnode.txt b/sourcecodes/data/example_sci/Llunnode.txt deleted file mode 100644 index 7ed6ff82..00000000 --- a/sourcecodes/data/example_sci/Llunnode.txt +++ /dev/null @@ -1 +0,0 @@ -5 diff --git a/sourcecodes/data/example_sci/Llunrows.txt b/sourcecodes/data/example_sci/Llunrows.txt deleted file mode 100644 index c15fb720..00000000 --- a/sourcecodes/data/example_sci/Llunrows.txt +++ /dev/null @@ -1 +0,0 @@ -501 diff --git a/sourcecodes/data/example_sci/Lluparameters.txt b/sourcecodes/data/example_sci/Lluparameters.txt deleted file mode 100644 index 11583baa..00000000 --- a/sourcecodes/data/example_sci/Lluparameters.txt +++ /dev/null @@ -1,21 +0,0 @@ -Genotype -Discrete node with 2 states -1 0.4860 -2 0.5140 - -Gene3 -Continuous node --0.0150 1.0589 - -Gene2 -Continuous node -0.1381 1.1779 - -Phenotype -Continuous node -0.0693 1.5989 - -Gene1 -Continuous node -0.1745 1.5275 - diff --git a/sourcecodes/data/example_sci/Lluparent.txt b/sourcecodes/data/example_sci/Lluparent.txt deleted file mode 100644 index b8626c4c..00000000 --- a/sourcecodes/data/example_sci/Lluparent.txt +++ /dev/null @@ -1 +0,0 @@ -4 diff --git a/sourcecodes/data/example_sci/Llustructure_old.txt b/sourcecodes/data/example_sci/Llustructure_old.txt deleted file mode 100644 index 5b464577..00000000 --- a/sourcecodes/data/example_sci/Llustructure_old.txt +++ /dev/null @@ -1,5 +0,0 @@ -Genotype 0.4860 0.5140 -Gene3 0.0001 0.0001 0.0001 0.0001 0.0002 0.0002 0.0003 0.0004 0.0006 0.0008 0.0010 0.0013 0.0018 0.0023 0.0029 0.0037 0.0047 0.0059 0.0074 0.0092 0.0113 0.0139 0.0170 0.0206 0.0248 0.0297 0.0354 0.0419 0.0493 0.0576 0.0669 0.0773 0.0887 0.1012 0.1147 0.1292 0.1447 0.1610 0.1781 0.1958 0.2139 0.2323 0.2507 0.2688 0.2866 0.3036 0.3197 0.3345 0.3479 0.3597 0.3695 0.3773 0.3828 0.3861 0.3870 0.3855 0.3817 0.3756 0.3673 0.3570 0.3449 0.3311 0.3160 0.2996 0.2824 0.2645 0.2463 0.2279 0.2095 0.1915 0.1740 0.1570 0.1409 0.1256 0.1114 0.0981 0.0859 0.0747 0.0646 0.0555 0.0474 0.0402 0.0340 0.0285 0.0237 0.0197 0.0162 0.0132 0.0108 0.0087 0.0070 0.0056 0.0044 0.0035 0.0027 0.0021 0.0016 0.0013 0.0010 0.0007 0.0006 -Gene1 0.0009 0.0012 0.0015 0.0019 0.0024 0.0030 0.0037 0.0046 0.0056 0.0069 0.0083 0.0101 0.0121 0.0145 0.0174 0.0206 0.0243 0.0286 0.0335 0.0389 0.0451 0.0520 0.0597 0.0682 0.0775 0.0876 0.0986 0.1105 0.1231 0.1366 0.1508 0.1657 0.1811 0.1971 0.2134 0.2300 0.2467 0.2633 0.2797 0.2956 0.3110 0.3256 0.3392 0.3517 0.3629 0.3726 0.3808 0.3873 0.3920 0.3948 0.3958 0.3948 0.3920 0.3872 0.3807 0.3726 0.3628 0.3516 0.3391 0.3254 0.3108 0.2955 0.2795 0.2631 0.2465 0.2299 0.2133 0.1969 0.1810 0.1655 0.1507 0.1365 0.1230 0.1103 0.0985 0.0875 0.0774 0.0681 0.0596 0.0520 0.0451 0.0389 0.0334 0.0286 0.0243 0.0206 0.0173 0.0145 0.0121 0.0101 0.0083 0.0068 0.0056 0.0046 0.0037 0.0030 0.0024 0.0019 0.0015 0.0012 0.0009 -Phenotype 0.0010 0.0013 0.0016 0.0021 0.0026 0.0033 0.0042 0.0052 0.0065 0.0080 0.0098 0.0120 0.0146 0.0176 0.0212 0.0253 0.0300 0.0354 0.0416 0.0486 0.0564 0.0651 0.0748 0.0854 0.0970 0.1096 0.1230 0.1374 0.1526 0.1685 0.1850 0.2021 0.2195 0.2370 0.2545 0.2718 0.2887 0.3049 0.3202 0.3344 0.3473 0.3587 0.3684 0.3763 0.3822 0.3860 0.3877 0.3872 0.3846 0.3798 0.3731 0.3644 0.3539 0.3418 0.3283 0.3136 0.2979 0.2813 0.2643 0.2468 0.2293 0.2118 0.1945 0.1777 0.1614 0.1458 0.1310 0.1170 0.1039 0.0918 0.0806 0.0704 0.0612 0.0529 0.0454 0.0388 0.0329 0.0278 0.0234 0.0195 0.0162 0.0134 0.0110 0.0090 0.0073 0.0059 0.0047 0.0038 0.0030 0.0024 0.0019 0.0015 0.0011 0.0009 0.0007 0.0005 0.0004 0.0003 0.0002 0.0002 0.0001 -Gene2 0.0008 0.0010 0.0013 0.0016 0.0020 0.0026 0.0032 0.0041 0.0050 0.0062 0.0077 0.0094 0.0114 0.0138 0.0166 0.0199 0.0237 0.0281 0.0331 0.0388 0.0453 0.0526 0.0607 0.0696 0.0795 0.0903 0.1021 0.1147 0.1282 0.1426 0.1578 0.1736 0.1900 0.2069 0.2241 0.2414 0.2587 0.2758 0.2924 0.3084 0.3236 0.3377 0.3506 0.3621 0.3719 0.3800 0.3863 0.3905 0.3927 0.3929 0.3910 0.3870 0.3811 0.3732 0.3636 0.3524 0.3397 0.3258 0.3108 0.2949 0.2783 0.2613 0.2440 0.2267 0.2095 0.1925 0.1760 0.1601 0.1449 0.1304 0.1167 0.1039 0.0920 0.0811 0.0711 0.0620 0.0537 0.0464 0.0398 0.0340 0.0288 0.0243 0.0205 0.0171 0.0142 0.0117 0.0097 0.0079 0.0064 0.0052 0.0042 0.0034 0.0027 0.0021 0.0017 0.0013 0.0010 0.0008 0.0006 0.0005 0.0004 diff --git a/sourcecodes/data/example_sci/Lluthr.txt b/sourcecodes/data/example_sci/Lluthr.txt deleted file mode 100644 index 2eb3c4fe..00000000 --- a/sourcecodes/data/example_sci/Lluthr.txt +++ /dev/null @@ -1 +0,0 @@ -0.5 diff --git a/sourcecodes/data/example_sci/Llutier.txt b/sourcecodes/data/example_sci/Llutier.txt deleted file mode 100644 index da7084fb..00000000 --- a/sourcecodes/data/example_sci/Llutier.txt +++ /dev/null @@ -1 +0,0 @@ -3,Tier1,1,Genotype,Tier2,3,Gene1,Gene2,Gene3,Tier3,1,Phenotype, \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Llutype.txt b/sourcecodes/data/example_sci/Llutype.txt deleted file mode 100644 index 9ea66ce4..00000000 --- a/sourcecodes/data/example_sci/Llutype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Genotype Gene3 Gene2 Phenotype Gene1 -2 1 1 1 1 diff --git a/sourcecodes/data/example_sci/Lluvar.txt b/sourcecodes/data/example_sci/Lluvar.txt deleted file mode 100644 index 56a6051c..00000000 --- a/sourcecodes/data/example_sci/Lluvar.txt +++ /dev/null @@ -1 +0,0 @@ -1 \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluvardata.txt b/sourcecodes/data/example_sci/Lluvardata.txt deleted file mode 100644 index 56a6051c..00000000 --- a/sourcecodes/data/example_sci/Lluvardata.txt +++ /dev/null @@ -1 +0,0 @@ -1 \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluvarname.txt b/sourcecodes/data/example_sci/Lluvarname.txt deleted file mode 100644 index 3fe283bd..00000000 --- a/sourcecodes/data/example_sci/Lluvarname.txt +++ /dev/null @@ -1 +0,0 @@ -Genotype \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluwhite.txt b/sourcecodes/data/example_sci/Lluwhite.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example_sci/Lluwhite.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh b/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh deleted file mode 100644 index ee0dde13..00000000 --- a/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \ args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/evidencemodified Llu -fi -exit diff --git a/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh b/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh deleted file mode 100644 index adde14dd..00000000 --- a/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \ args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/initialstructure Llu -fi -exit -- cgit 1.4.1