From 25b843f6bbacb1937bdb960777b73acbece64115 Mon Sep 17 00:00:00 2001 From: ziejd2 Date: Wed, 24 Feb 2021 14:36:59 -0600 Subject: GENENET8 update --- .../example_chl/old_gn/bWRcontinuous_input.txt | 44 +++ .../old_gn/bWRcontinuous_input_orig.txt | 42 ++ .../data/example_chl/old_gn/bWRgraphviz.txt | 11 + sourcecodes/data/example_chl/old_gn/bWRmap.txt | 5 + sourcecodes/data/example_chl/old_gn/bWRmapdata.txt | 1 + sourcecodes/data/example_chl/old_gn/bWRname.txt | 1 + .../data/example_chl/old_gn/bWRnet_figure.txt | 433 +++++++++++++++++++++ .../data/example_chl/old_gn/bWRnet_figure_new.txt | 433 +++++++++++++++++++++ sourcecodes/data/example_chl/old_gn/bWRnlevels.txt | 2 + sourcecodes/data/example_chl/old_gn/bWRnnode.txt | 1 + .../data/example_chl/old_gn/bWRparameters.txt | 21 + .../data/example_chl/old_gn/bWRstructure_input.txt | 7 + .../data/example_chl/old_gn/bWRstructure_old.txt | 5 + sourcecodes/data/example_chl/old_gn/bWRtype.txt | 2 + sourcecodes/data/example_chl/old_gn/bWRvar.txt | 1 + sourcecodes/data/example_chl/old_gn/bWRvardata.txt | 1 + sourcecodes/data/example_chl/old_gn/bWRvarname.txt | 1 + 17 files changed, 1011 insertions(+) create mode 100644 sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRmap.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRmapdata.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRname.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnlevels.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRnnode.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRparameters.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRtype.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRvar.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRvardata.txt create mode 100644 sourcecodes/data/example_chl/old_gn/bWRvarname.txt (limited to 'sourcecodes/data/example_chl/old_gn') diff --git a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt new file mode 100644 index 00000000..cf674ffd --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt @@ -0,0 +1,44 @@ +Ctrq3 MAS Neutrophil Load Weight +2 1 1 1 1 +2 0.969230769 3 3.252367514 1 +2 0.925170068 1.6 2.46322088 1.033472803 +1 0.427272727 33.8 4.206610024 0.831372549 +2 0.877835951 8.3 3.764250875 0.967153285 +2 0.914862915 4.4 3.691700208 1.046025105 +2 0.560334528 4.9 2.604550033 0.98046875 +1 0.383073497 13.1 4.273556814 0.812316716 +1 0.101010101 18.6 5.089640217 0.771929825 +1 0.106719368 18.9 4.915125346 0.80994152 +2 0.894736842 2.5 2.691700208 0.995515695 +1 0.067226891 19.8 4.878194228 0.846153846 +2 0.921022067 2.9 4.127428778 1.03875969 +2 0.938701923 0.7 4.366310867 0.984732824 +1 0.658008658 15.7 4.531121115 0.884210526 +2 0.9 4.8 2.604550033 0.913194444 +2 0.790923825 10.4 2.390670213 0.892857143 +1 0.295539033 8.6 4.24137213 0.85840708 +2 0.317757009 12.2 4.449648073 0.889830508 +1 0.032418953 20.2 5.053428044 0.811320755 +1 0.603960396 23.4 4.283775979 0.805460751 +2 0.939351199 3.6 2.349277527 0.952380952 +1 0.978448276 0.4 3.495405563 0.8875 +1 0.1 23.2 4.675613388 0.766101695 +1 0.036363636 32.6 4.938109253 0.828125 +1 0.660247593 9.2 3.826398782 0.921052632 +1 0.078651685 35.8 4.513630383 0.852112676 +1 0.186915888 20.7 5.048247532 0.779761905 +1 0.071578947 35.6 4.574586809 0.797356828 +1 0.239520958 15.4 4.331548761 0.941176471 +1 0.205741627 24.5 5.058547488 0.774193548 +1 0.062300319 13.4 4.594790195 0.832236842 +2 0.599675851 5 4.18178644 0.969348659 +1 0.324246772 13.5 4.252367514 0.858585859 +1 0.87628866 14.2 2.929061124 0.869863014 +1 0.146103896 15.6 4.579726449 0.9 +1 0.257383966 22.5 5.210214148 0.75 +1 0.033333333 31.1 4.632578756 0.718644068 +1 0.29739777 36.1 3.880756445 0.798353909 +2 0.872979215 4.2 4.097465554 0.856756757 +2 0.909221902 4.3 3.650307523 0.976 +1 0.10041841 28.3 4.46322088 0.757462687 + diff --git a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt new file mode 100644 index 00000000..62705bb9 --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt @@ -0,0 +1,42 @@ +Ctrq3 MAS Neutrophil Load Weight +2 0.969230769 3 3.252367514 1 +2 0.925170068 1.6 2.46322088 1.033472803 +1 0.427272727 33.8 4.206610024 0.831372549 +2 0.877835951 8.3 3.764250875 0.967153285 +2 0.914862915 4.4 3.691700208 1.046025105 +2 0.560334528 4.9 2.604550033 0.98046875 +1 0.383073497 13.1 4.273556814 0.812316716 +1 0.101010101 18.6 5.089640217 0.771929825 +1 0.106719368 18.9 4.915125346 0.80994152 +2 0.894736842 2.5 2.691700208 0.995515695 +1 0.067226891 19.8 4.878194228 0.846153846 +2 0.921022067 2.9 4.127428778 1.03875969 +2 0.938701923 0.7 4.366310867 0.984732824 +1 0.658008658 15.7 4.531121115 0.884210526 +2 0.9 4.8 2.604550033 0.913194444 +2 0.790923825 10.4 2.390670213 0.892857143 +1 0.295539033 8.6 4.24137213 0.85840708 +2 0.317757009 12.2 4.449648073 0.889830508 +1 0.032418953 20.2 5.053428044 0.811320755 +1 0.603960396 23.4 4.283775979 0.805460751 +2 0.939351199 3.6 2.349277527 0.952380952 +1 0.978448276 0.4 3.495405563 0.8875 +1 0.1 23.2 4.675613388 0.766101695 +1 0.036363636 32.6 4.938109253 0.828125 +1 0.660247593 9.2 3.826398782 0.921052632 +1 0.078651685 35.8 4.513630383 0.852112676 +1 0.186915888 20.7 5.048247532 0.779761905 +1 0.071578947 35.6 4.574586809 0.797356828 +1 0.239520958 15.4 4.331548761 0.941176471 +1 0.205741627 24.5 5.058547488 0.774193548 +1 0.062300319 13.4 4.594790195 0.832236842 +2 0.599675851 5 4.18178644 0.969348659 +1 0.324246772 13.5 4.252367514 0.858585859 +1 0.87628866 14.2 2.929061124 0.869863014 +1 0.146103896 15.6 4.579726449 0.9 +1 0.257383966 22.5 5.210214148 0.75 +1 0.033333333 31.1 4.632578756 0.718644068 +1 0.29739777 36.1 3.880756445 0.798353909 +2 0.872979215 4.2 4.097465554 0.856756757 +2 0.909221902 4.3 3.650307523 0.976 +1 0.10041841 28.3 4.46322088 0.757462687 diff --git a/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt b/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt new file mode 100644 index 00000000..2cd4e8cd --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt @@ -0,0 +1,11 @@ +digraph G { +size="10,10"; ratio = fill; +node [shape=square,width=1.5]; +Ctrq3 -> MAS; +Ctrq3 -> Neutrophil; +Ctrq3 -> Load; +Ctrq3 -> Weight; +MAS -> Neutrophil; +MAS -> Load; +Neutrophil -> Weight; +} \ No newline at end of file diff --git a/sourcecodes/data/example_chl/old_gn/bWRmap.txt b/sourcecodes/data/example_chl/old_gn/bWRmap.txt new file mode 100644 index 00000000..b24eae2f --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRmap.txt @@ -0,0 +1,5 @@ +Ctrq3 0.487652 1.365854 +MAS 0.355012 0.479560 +Neutrophil 10.929756 15.048780 +Load 0.825354 4.077143 +Weight 0.088036 0.877077 diff --git a/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt b/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt new file mode 100644 index 00000000..ce5416ce --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt @@ -0,0 +1 @@ +Ctrq3 MAS Load Neutrophil Weight diff --git a/sourcecodes/data/example_chl/old_gn/bWRname.txt b/sourcecodes/data/example_chl/old_gn/bWRname.txt new file mode 100644 index 00000000..48018335 --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRname.txt @@ -0,0 +1 @@ +Ctrq3 MAS Neutrophil Load Weight diff --git 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+5 diff --git a/sourcecodes/data/example_chl/old_gn/bWRparameters.txt b/sourcecodes/data/example_chl/old_gn/bWRparameters.txt new file mode 100644 index 00000000..6d6eabf6 --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRparameters.txt @@ -0,0 +1,21 @@ +Ctrq3 +Discrete node with 2 states +1 0.6341 +2 0.3659 + +MAS +Continuous node +0.4796 0.3499 + +Neutrophil +Continuous node +15.0488 10.8026 + +Load +Continuous node +4.0771 0.8165 + +Weight +Continuous node +0.8771 0.0875 + diff --git a/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt new file mode 100644 index 00000000..efa98e06 --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt @@ -0,0 +1,7 @@ +Ctrq3 MAS Neutrophil Load Weight +0 1 1 1 1 +0 0 1 1 0 +0 0 0 0 1 +0 0 0 0 0 +0 0 0 0 0 + diff --git a/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt new file mode 100644 index 00000000..a6aed858 --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt @@ -0,0 +1,5 @@ +Ctrq3 0.6341 0.3659 +MAS 0.0292 0.0326 0.0362 0.0401 0.0443 0.0489 0.0539 0.0592 0.0648 0.0709 0.0774 0.0842 0.0915 0.0992 0.1072 0.1157 0.1246 0.1338 0.1434 0.1534 0.1636 0.1742 0.1850 0.1961 0.2074 0.2188 0.2303 0.2419 0.2535 0.2651 0.2766 0.2879 0.2991 0.3099 0.3205 0.3307 0.3404 0.3496 0.3583 0.3663 0.3737 0.3804 0.3864 0.3916 0.3959 0.3994 0.4021 0.4038 0.4047 0.4046 0.4037 0.4018 0.3991 0.3954 0.3910 0.3857 0.3797 0.3729 0.3654 0.3572 0.3485 0.3392 0.3294 0.3192 0.3086 0.2977 0.2865 0.2752 0.2637 0.2521 0.2405 0.2289 0.2173 0.2059 0.1947 0.1837 0.1729 0.1623 0.1521 0.1422 0.1326 0.1234 0.1146 0.1062 0.0982 0.0906 0.0834 0.0765 0.0701 0.0641 0.0585 0.0532 0.0483 0.0438 0.0396 0.0357 0.0321 0.0288 0.0258 0.0231 0.0206 +Neutrophil 0.0245 0.0277 0.0313 0.0353 0.0396 0.0444 0.0496 0.0552 0.0613 0.0679 0.0750 0.0825 0.0906 0.0992 0.1083 0.1180 0.1281 0.1386 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0.0064 0.0054 diff --git a/sourcecodes/data/example_chl/old_gn/bWRtype.txt b/sourcecodes/data/example_chl/old_gn/bWRtype.txt new file mode 100644 index 00000000..03b402ee --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRtype.txt @@ -0,0 +1,2 @@ +Ctrq3 MAS Neutrophil Load Weight +2 1 1 1 1 diff --git a/sourcecodes/data/example_chl/old_gn/bWRvar.txt b/sourcecodes/data/example_chl/old_gn/bWRvar.txt new file mode 100644 index 00000000..56a6051c --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRvar.txt @@ -0,0 +1 @@ +1 \ No newline at end of file diff --git a/sourcecodes/data/example_chl/old_gn/bWRvardata.txt b/sourcecodes/data/example_chl/old_gn/bWRvardata.txt new file mode 100644 index 00000000..56a6051c --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRvardata.txt @@ -0,0 +1 @@ +1 \ No newline at end of file diff --git a/sourcecodes/data/example_chl/old_gn/bWRvarname.txt b/sourcecodes/data/example_chl/old_gn/bWRvarname.txt new file mode 100644 index 00000000..6ef2df09 --- /dev/null +++ b/sourcecodes/data/example_chl/old_gn/bWRvarname.txt @@ -0,0 +1 @@ +Ctrq3 \ No newline at end of file -- cgit 1.4.1