From 36cc6d757d700f8ee4952d3e333fa5fedd4922ff Mon Sep 17 00:00:00 2001 From: ziejd2 Date: Thu, 31 Jan 2019 15:36:35 -0600 Subject: Update README.md --- README.md | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) (limited to 'README.md') diff --git a/README.md b/README.md index 5a6dd5a7..e57a8e1a 100644 --- a/README.md +++ b/README.md @@ -4,22 +4,23 @@ This contains the code for the Bayesian Network Webserver (BNW). The original BNW website is compbio.uthsc.edu/BNW, which currently redirects to BNW_1.2. -The current development version of BNW is compbio.uthsc.edu/BNW_1.21. I am working on the cross-validation/test set predictions in the development version- these features have been removed from version 1.2. Otherwise, 1.2 and 1.21 should be the same. +The current development version of BNW is compbio.uthsc.edu/BNW_1.21. I am working on the cross-validation/test set predictions in the development version. I also added a couple of usability features. -I recently added some text files here that provide more in-depth descriptions of the BNW code. -These are not very readable, but will hopefully be useful for identifying which files need to be modified when updating BNW. +Below are a couple of text files that provide descriptions of the BNW code. -BNW_file_overview.txt lists the files that are needed to run BNW and gives a brief description of the purpose of each file. -BNW_data_flow.txt goes through a typical session of BNW describing the order in which codes and scripts are used, as well as when output files are written and the output file format. There are four branches. -1) master: This is currently compbio.uthsc.edu/BNW_1.2 on the BNW server. The main change here is the changes in the parameter learning methods. compbio.uthsc.edu/BNW redirects to this version. +1) master: This is currently compbio.uthsc.edu/BNW_1.21 on the BNW server. -2) matlab_original (compbio.uthsc.edu/BNW_1.01): This is functionally identical to the original BNW code. The only difference is that unused files were removed. Currently, compbio.uthsc.edu/BNW redirects to this version. +2) new_server: Branched from master to make changes with the new server. -3) octave_version (compbio.uthsc.edu/BNW_1.02): This should perform similarly to the original version of BNW. However, instead of Matlab, Octave is used and a couple of new features were added. +3) matlab_original (compbio.uthsc.edu/BNW_1.01): This is functionally identical to the original BNW code. The only difference is that unused files were removed. -4) octave_php_separate (compbio.uthsc.edu/BNW_1.1): The main goal here is to rewrite the code so that all calculations are performed in Octave. PHP code only reads from files and displays figures. I am making other small changes along the way. This branch could probably be deleted at some point. +4) octave_version (compbio.uthsc.edu/BNW_1.02): This should perform similarly to the original version of BNW. However, instead of Matlab, Octave is used and a couple of new features were added. + +5) octave_php_separate (compbio.uthsc.edu/BNW_1.1): The main goal here is to rewrite the code so that all calculations are performed in Octave. PHP code only reads from files and displays figures. I am making other small changes along the way. This branch could probably be deleted at some point. -- cgit 1.4.1