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Malaria infection analysis

This repository contains the software to analyses a malaria infection dataset with outcomes.


Install RStudio with R.

Packages can be installed with, for example


Under GNU Guix

With GNU Guix install

guix package -i r r-markdown r-rmarkdown r-tidyverse r-hash r-hmisc



This is pre-published data. At this point contact KEMRI if you want access. The following datasets are available:


The data is from 4 sampling locations with lots of measurements. The goal is to find predictors for outcomes. Since this is small-sized data we can use correlation and linear models using R.

Methods used are correlation, linear regression, principle component analysis, category analysis and multi-level linear models.


Code is published under the GPLv3.

Francis Ndungu & Pjotr Prins