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Pjotr Prins 10 months ago
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      README.org

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README.org View File

@@ -4,8 +4,7 @@ This repo contains the prototype for a column-based cBAM reader/writer
which will (hopefully) outperform tools like sambamba. To make this happen
the following steps are required:

- [ ] Working cbam
+ [ ] Compile cbam with Makefile and no other dependency than BioD
+ [ ] Compile cbam binary with Makefile and no other dependency than BioD
+ [ ] Document design of cbam format in [[./doc/CBAM.org]]
+ [ ] Create cbam file from bam
+ [ ] Implement markdup on cbam


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