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authorEfraim Flashner2020-01-03 07:41:42 -0600
committerEfraim Flashner2020-01-03 07:41:42 -0600
commit44c7adcc1e9dbd006be0e2892bba3903fb40fc6e (patch)
treecfb58cc841a5918b584263e69accf36989c13744
parentd76e6c198cbed3b5ceaa4eb21c539e22be9f3861 (diff)
downloadguix-bioinformatics-44c7adcc1e9dbd006be0e2892bba3903fb40fc6e.tar.gz
gn: update jupyterhub, the-littlest-jupyterhub
-rw-r--r--gn/packages/jupyterhub.scm62
1 files changed, 40 insertions, 22 deletions
diff --git a/gn/packages/jupyterhub.scm b/gn/packages/jupyterhub.scm
index 782157d..5b69b5b 100644
--- a/gn/packages/jupyterhub.scm
+++ b/gn/packages/jupyterhub.scm
@@ -17,7 +17,7 @@
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages serialization)
#:use-module (gnu packages time)
- )
+ #:use-module (gn packages node))
(define-public jupyterhub
(package
@@ -29,30 +29,46 @@
(uri (pypi-uri "jupyterhub" version))
(sha256
(base32
- "0zx6gw9yhgki05j21p6x1x2sf5a2mg2c2mx0ii8rl6q4b98ilm1k"))))
+ "0zx6gw9yhgki05j21p6x1x2sf5a2mg2c2mx0ii8rl6q4b98ilm1k"))
+ (patches
+ (list
+ (origin
+ (method url-fetch)
+ (uri "https://github.com/jupyterhub/jupyterhub/commit/b624116be79168f37af728195af663498f3c55c0.patch")
+ (file-name "jupyterhub-fix-first-launch-errors.patch")
+ (sha256
+ (base32
+ "00rbqz0rz2642ypfgpd49fv7wzpc9n0pdfqixqp3zxs6vqf3x372")))))))
(build-system python-build-system)
(arguments
'(#:tests? #f ; Tests require a webserver, postgresql database and npm.
#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
+ (lambda* (#:key tests? inputs #:allow-other-keys)
(if tests?
- (;; From .travis.yml
- (invoke "initdb" "main")
- (invoke "pg_ctl" "-D" "main" "start")
- (invoke "psql" "--list")
- ;; From ci/init-db.sh
- (invoke "psql" "-d" "postgres" "-c"
- "CREATE DATABASE jupyterhub_upgrade_072;")
- (invoke "psql" "-d" "postgres" "-c"
- "CREATE DATABASE jupyterhub_upgrade_081;")
- (invoke "psql" "-d" "postgres" "-c"
- "CREATE DATABASE jupyterhub_upgrade_094;")
- (invoke "pytest" "-v" "--maxfail=2" "jupyterhub/tests"))
+ ((let* ((postgres (assoc-ref inputs "postgresql"))
+ (initdb (string-append postgres "/bin/initdb"))
+ (pg_ctl (string-append postgres "/bin/pg_ctl"))
+ (psql (string-append postgres "/bin/psql"))
+ )
+ ;; From .travis.yml
+ (invoke initdb "main")
+ (invoke pg_ctl "-D" "main" "start")
+ (invoke psql "--list")
+ ;; From ci/init-db.sh
+ (invoke psql "-d" "postgres" "-c"
+ "CREATE DATABASE jupyterhub_upgrade_072;")
+ (invoke psql "-d" "postgres" "-c"
+ "CREATE DATABASE jupyterhub_upgrade_081;")
+ (invoke psql "-d" "postgres" "-c"
+ "CREATE DATABASE jupyterhub_upgrade_094;")
+ (invoke "pytest" "-v" "--maxfail=2" "jupyterhub/tests"))
+ )
#t))))))
(propagated-inputs
- `(("python-alembic" ,python-alembic)
+ `(;("node-configurable-http-proxy" ,node-configurable-http-proxy)
+ ("python-alembic" ,python-alembic)
("python-async-generator" ,python-async-generator)
("python-certipy" ,python-certipy)
("python-dateutil" ,python-dateutil)
@@ -64,11 +80,13 @@
("python-requests" ,python-requests)
("python-sqlalchemy" ,python-sqlalchemy)
("python-tornado" ,python-tornado)
- ("python-traitlets" ,python-traitlets)))
+ ("python-traitlets" ,python-traitlets)
+ ;; Recommended but not required:
+ ("python-pycurl" ,python-pycurl)))
(native-inputs
`(
- ;("postgresql" ,postgresql)
- ;("python-psycopg2" ,python-psycopg2)
+ ("postgresql" ,postgresql)
+ ("python-psycopg2" ,python-psycopg2)
("python-beautifulsoup4" ,python-beautifulsoup4)
("python-jupyter-client" ,python-jupyter-client)
@@ -86,8 +104,8 @@ proxies multiple instances of the single-user Jupyter notebook server.")
(license license:bsd-3)))
(define-public the-littlest-jupyterhub
- (let ((commit "770b95027951c1e191690b0f65d3e2e2d72ba05f") ; Oct 30, 2019
- (revision "1"))
+ (let ((commit "29e8bcc4865d26ef67910862a567f55f46f96593") ; Dec 6, 2019
+ (revision "2"))
(package
(name "the-littlest-jupyterhub")
(version (git-version "0.0.0" revision commit))
@@ -100,7 +118,7 @@ proxies multiple instances of the single-user Jupyter notebook server.")
(file-name (git-file-name name version))
(sha256
(base32
- "0dnin2rwrqr8nzf7gj6sjqchvdi24kd0sgjh655c4zq1hdbpsmc6"))))
+ "10xrmia8w9vd9zmgww426kyd95jx81l5c4zpq84gqbvkibq61rsa"))))
(build-system python-build-system)
(arguments
'(#:phases