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authorEfraim Flashner2019-12-22 03:47:13 -0600
committerEfraim Flashner2019-12-22 03:47:13 -0600
commit3035ea5144af76b6ff260b1bceef3feafec8a177 (patch)
tree1f131f9a46f1edd8dc3557c0b6d0da40a9f49710
parente8c494c98231c9c058d2718df45a30234aa3475b (diff)
downloadguix-bioinformatics-3035ea5144af76b6ff260b1bceef3feafec8a177.tar.gz
gn: Add php-5.6
-rw-r--r--gn/packages/php.scm231
1 files changed, 231 insertions, 0 deletions
diff --git a/gn/packages/php.scm b/gn/packages/php.scm
new file mode 100644
index 0000000..47e473d
--- /dev/null
+++ b/gn/packages/php.scm
@@ -0,0 +1,231 @@
+(define-module (gn packages php)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages pcre)
+ #:use-module (gnu packages php)
+ #:use-module (gnu packages tls)
+ #:use-module (gnu packages xml)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix utils)
+ #:use-module (srfi srfi-1))
+
+;; This package is EOL as of January 2019.
+(define-public php-5.6
+ (package
+ (inherit php)
+ (name "php")
+ (version "5.6.40")
+ (home-page "https://secure.php.net/")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append home-page "distributions/"
+ "php-" version ".tar.xz"))
+ (sha256
+ (base32
+ "073dcpiaq89b0nv9a5andlkhwxhpr5f2wd65s7xxg59rxqgaas8k"))))
+ (arguments
+ `(#:configure-flags
+ (let-syntax ((with (syntax-rules ()
+ ((_ option input)
+ (string-append option "="
+ (assoc-ref %build-inputs input))))))
+ (list (with "--with-bz2" "bzip2")
+ (with "--with-curl" "curl")
+ (with "--with-gdbm" "gdbm")
+ (with "--with-gettext" "glibc") ; libintl.h
+ (with "--with-gmp" "gmp")
+ (with "--with-ldap" "openldap")
+ (with "--with-ldap-sasl" "cyrus-sasl")
+ (with "--with-libxml-dir" "libxml2")
+ (with "--with-openssl-dir" "openssl")
+ (with "--with-pdo-pgsql" "postgresql")
+ (with "--with-pdo-sqlite" "sqlite")
+ (with "--with-pgsql" "postgresql")
+ ;; PHP’s Pspell extension, while retaining its current name,
+ ;; now uses the Aspell library.
+ (with "--with-pspell" "aspell")
+ (with "--with-readline" "readline")
+ (with "--with-sqlite3" "sqlite")
+ (with "--with-tidy" "tidy")
+ (with "--with-xsl" "libxslt")
+ (with "--with-zlib-dir" "zlib")
+ ;; We could add "--with-snmp", but it requires netsnmp that
+ ;; we don't have a package for. It is used to build the snmp
+ ;; extension of php.
+ "--with-external-pcre"
+ "--with-external-gd"
+ "--with-iconv"
+ "--with-openssl"
+ "--with-mysqli" ; Required for, e.g. wordpress
+ "--with-pdo-mysql"
+ "--with-zip"
+ "--with-zlib"
+ "--enable-bcmath" ; Required for, e.g. Zabbix frontend
+ ;"--enable-calendar"
+ "--enable-dba=shared"
+ "--enable-exif"
+ "--enable-flatfile"
+ "--enable-fpm"
+ "--enable-ftp"
+ "--enable-inifile"
+ ;"--enable-intl"
+ "--enable-mbstring"
+ "--enable-pcntl"
+ "--enable-sockets"))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'do-not-record-build-flags
+ (lambda _
+ ;; Prevent configure flags from being stored and causing
+ ;; unnecessary runtime dependencies.
+ (substitute* "scripts/php-config.in"
+ (("@CONFIGURE_OPTIONS@") "")
+ (("@PHP_LDFLAGS@") ""))
+ ;; This file has ISO-8859-1 encoding.
+ (with-fluids ((%default-port-encoding "ISO-8859-1"))
+ (substitute* "main/build-defs.h.in"
+ (("@CONFIGURE_COMMAND@") "(omitted)")))
+ #t))
+ (add-before 'build 'patch-/bin/sh
+ (lambda _
+ (substitute* '("run-tests.php" "ext/standard/proc_open.c")
+ (("/bin/sh") (which "sh")))
+ #t))
+ (add-before 'check 'prepare-tests
+ (lambda _
+ ;; Some of these files have ISO-8859-1 encoding, whereas others
+ ;; use ASCII, so we can't use a "catch-all" find-files here.
+ (with-fluids ((%default-port-encoding "ISO-8859-1"))
+ (substitute* '("ext/mbstring/tests/mb_send_mail02.phpt"
+ "ext/mbstring/tests/mb_send_mail04.phpt"
+ "ext/mbstring/tests/mb_send_mail05.phpt"
+ "ext/mbstring/tests/mb_send_mail06.phpt")
+ (("/bin/cat") (which "cat"))))
+ (substitute* '("ext/mbstring/tests/mb_send_mail01.phpt"
+ "ext/mbstring/tests/mb_send_mail03.phpt"
+ "ext/standard/tests/general_functions/bug34794.phpt"
+ "ext/standard/tests/general_functions/bug44667.phpt"
+ "ext/standard/tests/general_functions/proc_open.phpt")
+ (("/bin/cat") (which "cat")))
+
+ ;; The encoding of this file is not recognized, so we simply drop it.
+ (delete-file "ext/mbstring/tests/mb_send_mail07.phpt")
+
+ (substitute* "ext/standard/tests/streams/bug60602.phpt"
+ (("'ls'") (string-append "'" (which "ls") "'")))
+
+ ,@(if (string-prefix? "arm" (or (%current-system)
+ (%current-target-system)))
+ ;; Drop tests known to fail on armhf.
+ '((for-each delete-file
+ (list
+ "ext/calendar/tests/unixtojd_error1.phpt"
+ ;; arm can be a lot slower, so a time-related test fails
+ "ext/fileinfo/tests/cve-2014-3538-nojit.phpt"
+ "ext/pcre/tests/bug76514.phpt"
+ "ext/pcre/tests/preg_match_error3.phpt"
+ "ext/standard/tests/general_functions/var_export-locale.phpt"
+ "ext/standard/tests/general_functions/var_export_basic1.phpt"
+ "ext/intl/tests/timezone_getErrorCodeMessage_basic.phpt"
+ "ext/intl/tests/timezone_getOffset_error.phpt")))
+ '())
+
+ ;; Drop tests that are known to fail.
+ (for-each delete-file
+ '("ext/posix/tests/posix_getgrgid.phpt" ; Requires /etc/group.
+ "ext/sockets/tests/bug63000.phpt" ; Fails to detect OS.
+ "ext/sockets/tests/socket_shutdown.phpt" ; Requires DNS.
+ "ext/sockets/tests/socket_send.phpt" ; Likewise.
+ "ext/sockets/tests/mcast_ipv4_recv.phpt" ; Requires multicast.
+ ;; These needs /etc/services.
+ "ext/standard/tests/general_functions/getservbyname_basic.phpt"
+ "ext/standard/tests/general_functions/getservbyport_basic.phpt"
+ "ext/standard/tests/general_functions/getservbyport_variation1.phpt"
+ ;; And /etc/protocols.
+ "ext/standard/tests/network/getprotobyname_basic.phpt"
+ "ext/standard/tests/network/getprotobynumber_basic.phpt"
+ ;; And exotic locales.
+ "ext/standard/tests/strings/setlocale_basic1.phpt"
+ "ext/standard/tests/strings/setlocale_basic2.phpt"
+ "ext/standard/tests/strings/setlocale_basic3.phpt"
+ "ext/standard/tests/strings/setlocale_variation1.phpt"
+
+ ;; XXX: These iconv tests have the expected outcome,
+ ;; but with different error messages.
+ ;; Expects "illegal character", instead gets "unknown error (84)".
+ "ext/iconv/tests/bug52211.phpt"
+ ;; Expects "wrong charset", gets unknown error (22).
+ "ext/iconv/tests/iconv_strlen_error2.phpt"
+ "ext/iconv/tests/iconv_substr_error2.phpt"
+ ;; Expects conversion error, gets "error condition Termsig=11".
+ "ext/iconv/tests/iconv_strpos_error2.phpt"
+ "ext/iconv/tests/iconv_strrpos_error2.phpt"
+ ;; Expects "invalid multibyte sequence" but got
+ ;; "unknown error".
+ "ext/iconv/tests/bug76249.phpt"
+
+ ;; Expects a false boolean, gets empty array from glob().
+ "ext/standard/tests/file/bug41655_1.phpt"
+ "ext/standard/tests/file/glob_variation5.phpt"
+ ;; Expects iconv to detect illegal characters, instead gets
+ ;; "unknown error (84)" and heap corruption(!).
+ "ext/iconv/tests/bug48147.phpt"
+ ;; Expects illegal character ".", gets "=?utf-8?Q?."
+ "ext/iconv/tests/bug51250.phpt"
+ ;; iconv throws "buffer length exceeded" on some string checks.
+ "ext/iconv/tests/iconv_mime_encode.phpt"
+ ;; file_get_contents(): iconv stream filter
+ ;; ("ISO-8859-1"=>"UTF-8") unknown error.
+ "ext/standard/tests/file/bug43008.phpt"
+ ;; Table data not created in sqlite(?).
+ "ext/pdo_sqlite/tests/bug_42589.phpt"
+
+ ;; These tests are specifically added for php-5.6.40
+ ;;DBA INIFILE handler test
+ "ext/dba/tests/dba_inifile.phpt"
+ ;;Testing ftp_nb_fget resume parameter
+ "ext/ftp/tests/ftp_nb_fget_basic3.phpt"
+ ;;Test iconv_mime_decode() function : usage variations - Pass different data types to charset arg
+ "ext/iconv/tests/iconv_mime_decode_variation3.phpt"
+ ;;Test iconv_strlen() function : usage variations - Pass different data types as $encoding arg
+ "ext/iconv/tests/iconv_strlen_variation2.phpt"
+ ;;Test iconv_strpos() function : usage variations - pass different data types as $charset arg
+ "ext/iconv/tests/iconv_strpos_variation4.phpt"
+ ;;Test iconv_strrpos() function : usage variations - pass different data types as $encoding arg
+ "ext/iconv/tests/iconv_strrpos_variation3.phpt"
+ ;;Bug #52681 (mb_send_mail() appends an extra MIME-Version header)
+ "ext/mbstring/tests/bug52861.phpt"
+ ;;SimpleXML: XPath
+ "ext/simplexml/tests/008.phpt"
+ ;;substr_compare()
+ "ext/standard/tests/strings/substr_compare.phpt"
+ ;;Bug #64230 (XMLReader does not suppress errors)
+ "ext/xmlreader/tests/bug64230.phpt"
+ ;; unable to connect to qa.php.net:80
+ "ext/dom/tests/dom005.phpt"
+ ;;openssl_error_string() tests
+ "ext/openssl/tests/openssl_error_string_basic.phpt"
+ ;;Bug #61948 (CURLOPT_COOKIEFILE '' raises open_basedir restriction)
+ "ext/curl/tests/bug61948.phpt"
+ ;;Bug #64267 (CURLOPT_INFILE doesn't allow reset)
+ "ext/curl/tests/bug64267.phpt"
+ ;;Test curl_error() & curl_errno() function with problematic proxy
+ "ext/curl/tests/curl_basic_010.phpt"
+ ;;Test 10: EXSLT Support
+ "ext/xsl/tests/xslt010.phpt"))
+
+ ;; Skip tests requiring network access.
+ (setenv "SKIP_ONLINE_TESTS" "1")
+ ;; Without this variable, 'make test' passes regardless of failures.
+ (setenv "REPORT_EXIT_STATUS" "1")
+ ;; Skip tests requiring I/O facilities that are unavailable in the
+ ;; build environment
+ (setenv "SKIP_IO_CAPTURE_TESTS" "1")
+ #t)))
+ #:test-target "test"))
+ (inputs
+ `(,@(fold alist-delete (package-inputs php)
+ '("openssl" "pcre"))
+ ("libxml2" ,libxml2)
+ ("openssl" ,openssl-1.0)
+ ("pcre" ,pcre)))))