gn-uploader/scripts, branch main gn-uploader: Data uploader for GeneNetwork http://git.genenetwork.org/gn-uploader/atom?h=main 2026-04-16T19:13:49+00:00 Improve error messages. 2026-04-16T19:13:49+00:00 Frederick Muriuki Muriithi 2026-04-16T19:13:49+00:00 urn:sha1:d6d093f89bb4ed041e63376f42628a1e3f143b5c To help users better understand what the problem with their data is, the errors need to be clearer to them. This commit fixes some error messages. Fix bug with cascade of name checks. 2026-04-16T18:55:04+00:00 Frederick Muriuki Muriithi 2026-04-16T18:55:04+00:00 urn:sha1:98d4e05dd776f90333f6430e7e42e28689e6b3bf The `meta["data_name"]` statement was leading to an exception in any case where the "data_name" key is not provided. This defeats the purpose of allowing either "dataname" or "data_name". This commit fixes that, while handling the case where neither one of the two are provided. Update to error log, because it's an error, even though we return 0. 2026-04-15T19:50:50+00:00 Frederick Muriuki Muriithi 2026-04-15T19:50:50+00:00 urn:sha1:dbe33a9dc6a19106d86532eb0cd35c26607ac85d Move tracing details to INFO loglevel rather than debug. 2026-04-15T19:49:27+00:00 Frederick Muriuki Muriithi 2026-04-15T19:49:27+00:00 urn:sha1:2f9f153f566b9593f88e7bf6a0e3cd96c05346b4 We need to trace the auth process so as to help with debugging resource creation failures. Pull helper function out of main(). 2026-04-15T19:48:41+00:00 Frederick Muriuki Muriithi 2026-04-15T19:48:41+00:00 urn:sha1:5a8f1d5368e6a4119cd73955c0d0ede0f98cce42 Use multiple threads to speed up the computations. 2026-04-09T17:33:44+00:00 Frederick Muriuki Muriithi 2026-04-09T17:33:44+00:00 urn:sha1:92286b4734963770ae3e6a930a5cd96c6ac430a4 Specify the --permu_output option to QTLReaper 2026-04-09T17:27:29+00:00 Frederick Muriuki Muriithi 2026-04-09T17:27:29+00:00 urn:sha1:5e49a4be1866dea06d35d4c0a8004f8ccf9dd19e Specify the --permu_output option to QTLReaper to prevent it from attempting to write to the working directory, which in the guix containers is a READONLY file system. pylint: non-assigned expressions - silence linter. 2026-04-09T14:16:13+00:00 Frederick Muriuki Muriithi 2026-04-09T14:14:10+00:00 urn:sha1:f183e7bfd5ee4e84e78d2c5915b23e13be6e31e5 Prompt user for a name for the resource object. 2026-04-09T14:06:57+00:00 Frederick Muriuki Muriithi 2026-04-09T14:06:57+00:00 urn:sha1:3fdbad1fe6b83229bb0641377130f1364624d059 Add the DATASET-ID argument to command-line interfaces. 2026-03-25T18:03:22+00:00 Frederick Muriuki Muriithi 2026-03-25T18:03:22+00:00 urn:sha1:b727b223fb6d1e02a5eb4d7b1a6f5a79773fc648