Update issues, closing some that are complete.

8 files changed, 37 insertions, 15 deletions

diff --git a/issues/authentication_authorisation/rework-resources-system.gmi b/issues/authentication_authorisation/rework-resources-system.gmi
index eeec47d..85d37a1 100644
--- a/issues/authentication_authorisation/rework-resources-system.gmi
+++ b/issues/authentication_authorisation/rework-resources-system.gmi
@@ -3,10 +3,10 @@
 ## Tags
 
 * assigned: fredm
-* status: open
+* status: closed, completed
 * priority: medium
 * type: refactor, feature request, design change
-* keywords: auth, authorisation, resources, design change
+* keywords: auth, authorisation, resources, design change, gn-auth
 
 ## Description
 
@@ -29,3 +29,11 @@ This means that there is a need to refactor the code to make the concept of a "r
 * [x] Make resource to represent the system itself
 * [x] Make resources, each representing one of the "user groups"
 * [ ] Make resources, each representing the users of the system -- maybe?
+
+### Update 2024-02-27
+
+The resource system was updated a while ago.
+
+We still do not view users as resources for the time being, and handle them slightly different from the rest of the system, controlling access to the users via other resources like the 'System' and 'Group' resources.
+
+This is considered completed.
diff --git a/issues/authentication_authorisation/temp-trait-error.gmi b/issues/authentication_authorisation/temp-trait-error.gmi
index 04ab99d..cc5d6db 100644
--- a/issues/authentication_authorisation/temp-trait-error.gmi
+++ b/issues/authentication_authorisation/temp-trait-error.gmi
@@ -4,8 +4,8 @@
 
 * assigned: fredm, zsloan
 * priority: high
-* status: open
-* keywords: authentication, authorisation, oauth2, temp-traits
+* status: closed, completed
+* keywords: authentication, authorisation, oauth2, temp-traits, gn-auth
 * type: bug
 
 ## Description
diff --git a/issues/error-handling-external-errors.gmi b/issues/error-handling-external-errors.gmi
index 9208a5d..d1707de 100644
--- a/issues/error-handling-external-errors.gmi
+++ b/issues/error-handling-external-errors.gmi
@@ -27,3 +27,9 @@ So far, the error-handling for such services has been inconsistent at best. In t
 > => https://github.com/genenetwork/genenetwork2/pull/830
 
 We can then maybe incorporate the use of UUIDs in the errors, to help with tracking the errors in the logs where necessary.
+
+----
+
+Some work has been done on this, but it is still a work in progress.
+
+**Maybe link the commits here…**
diff --git a/issues/gnqc-py/rework-tests-remove-redis-as-test-dependency.gmi b/issues/gn-uploader/rework-tests-remove-redis-as-test-dependency.gmi
index c4ee5e8..a305416 100644
--- a/issues/gnqc-py/rework-tests-remove-redis-as-test-dependency.gmi
+++ b/issues/gn-uploader/rework-tests-remove-redis-as-test-dependency.gmi
@@ -3,9 +3,9 @@
 ## Tags
 
 * assigned: fred, fredm
-* status: open
+* status: closed, completed
 * priority: medium
-* keywords: gnqc-py, tests
+* keywords: gn-uploader, tests
 * type: improvement
 
 ## Description
@@ -13,3 +13,7 @@
 Some tests depend on a running redis instance to work.
 
 Either move these to an integration tests harness, to be run after the system has run the unit tests and has been deployed, or remove them completely from the system.
+
+### Update 2024-02-27
+
+The system was updated to use prefixed keys, and the full tests now run correctly. Still need to add the tests to the guix CI/CD system perhaps...
diff --git a/issues/gnqc-py/upload-strains.gmi b/issues/gn-uploader/upload-strains.gmi
index 4815a06..6dce6bf 100644
--- a/issues/gnqc-py/upload-strains.gmi
+++ b/issues/gn-uploader/upload-strains.gmi
@@ -6,7 +6,7 @@
 * assigned: fredm, zachs, zsloan, acenteno
 * priority: high
 * type: feature-request
-* keywords: QC, quality control, strains
+* keywords: QC, quality control, strains, gn-uploader
 
 ## Description
 
diff --git a/issues/quality-control/Fix-opaque-errors.gmi b/issues/quality-control/Fix-opaque-errors.gmi
index 0f81233..3864c81 100644
--- a/issues/quality-control/Fix-opaque-errors.gmi
+++ b/issues/quality-control/Fix-opaque-errors.gmi
@@ -2,11 +2,11 @@
 
 ## Tags
 
-* status: open
+* status: closed, completed
 * assigned: fredm
 * type: bug
 * priority: high
-* keywords: opaque errors, errors, UX, user experience
+* keywords: opaque errors, errors, UX, user experience, gn-uploader
 
 ## Description
 
diff --git a/issues/quality-control/qc-fix-integration-tests.gmi b/issues/quality-control/qc-fix-integration-tests.gmi
index cf0b833..c233c20 100644
--- a/issues/quality-control/qc-fix-integration-tests.gmi
+++ b/issues/quality-control/qc-fix-integration-tests.gmi
@@ -4,8 +4,8 @@
 
 * assigned: fredm
 * priority: medium
-* status: open
-* keywords: quality control, qc, tests
+* status: closed, completed
+* keywords: quality control, qc, tests, gn-uploader
 * type: bug
 
 ## Description
@@ -19,3 +19,9 @@ command = [shutil.which("redis-server"), "--port", str(port)]
 This is because the `shutil.which("redis-server")` call returns `None` in the newer code, due to removal of redis (the server) from the list of dependencies.
 
 To work around the issue, I suggest the use of an explicit, albeit temporary, redis database for testing, by modifying the `REDIS_URL` value in the tests sessions. The modification will simply change the URL to point to a new database for the test session, enabling the tests to run unhindered, but also without tainting the production redis databases.
+
+### Update 2024-02-27
+
+The system was updated to use prefixed keys, and the full tests now run correctly.
+
+=> /issues/gn-uploader/rework-tests-remove-redis-as-test-dependency related issue
diff --git a/issues/quality-control/read-samples-from-database-by-species.gmi b/issues/quality-control/read-samples-from-database-by-species.gmi
index fae1a18..fa66c17 100644
--- a/issues/quality-control/read-samples-from-database-by-species.gmi
+++ b/issues/quality-control/read-samples-from-database-by-species.gmi
@@ -5,8 +5,8 @@
 * type: bug
 * priority: critical
 * assigned: fredm, acenteno
-* keywords: QC, quality control, samples, strains, cases
-* status: open
+* keywords: QC, quality control, samples, strains, cases, gn-uploader
+* status: closed, completed
 
 ## Description
 
@@ -30,5 +30,3 @@ This was a myopic view of the data uploader, and needs to be expanded significan
 
 Fixed with this commit:
 => https://gitlab.com/fredmanglis/gnqc_py/-/commit/cdd4dc456e56bb4eb055e1cb7f2518d45fb3bfb9
-
-Awaiting deployment