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authorPjotr Prins2023-07-06 03:54:48 -0500
committerPjotr Prins2023-07-06 03:54:48 -0500
commite4404b58a7264434f7b9bfde07a7d86d50c55d3c (patch)
tree88487344af47b8e0f7bc98b89f76b09981c72746
parent63d70fa4b375ee3be73c6c997994e838a60d86c0 (diff)
downloadgn-gemtext-e4404b58a7264434f7b9bfde07a7d86d50c55d3c.tar.gz
GNSoC - minor edits
-rw-r--r--topics/biohackathon/GNGSoC2023.gmi22
1 files changed, 13 insertions, 9 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi
index 2bdeaef..f1377a7 100644
--- a/topics/biohackathon/GNGSoC2023.gmi
+++ b/topics/biohackathon/GNGSoC2023.gmi
@@ -1,4 +1,4 @@
-# GNGSoC 2023
+# GNSoC 2023
GN Summer of Code
@@ -37,9 +37,13 @@ git repo genenetwork-machines, guix-bioinformatics
* RISC-V port progressing with node and zig 0.10
* guix-bioinformatics now has CI!
-* ~700 packages, 300 are broken ;)
+* ~700 packages, 240 are broken ;)
+
+=> https://ci.genenetwork.org/jobs/guix-bioinformatics
+
* CI/CD is up and running again (and broken)
* Rethink: channels and pull channels are used for CI/CD
+* Move unused packages elsewhere
## Nextgen databases
@@ -66,8 +70,8 @@ git repo genenetwork3
### Week 2
* RDF structure to markdown dump
-* Fred running SPARQL queries
-* Alex lmdb phenotype API endpoints
+* Fred is running SPARQL queries
+* Alex is adding lmdb phenotype API endpoints
## LLMs & metadata (RDF)
@@ -87,9 +91,9 @@ git repo genenetwork3
### Week 2
-* API is working mostly
+* Open AI API is working
* Shelby is integrating into a Flask interface for GeneNetwork
-* Pubmed UI style
+* Using a pubmed UI style
## API to access data from GN
@@ -112,9 +116,9 @@ git repo gn-docs & genenetwork3 & SPARQL
* Ideas on structuring
* Questions on GN
* Next: unify access to information
- - collecting questions from users
- - settle on form of API
- - create example URLs for mouse
+* collecting questions from users
+* settle on form of API
+* create example URLs for mouse
### Week 2