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| author | zsloan | 2022-04-07 14:32:41 -0500 |
|---|---|---|
| committer | GitHub | 2022-04-07 14:32:41 -0500 |
| commit | 4604c7316c97b1da2d1006daacd61867f275f570 (patch) | |
| tree | ba060ece3fc34ce73c24face4188a1ba12242733 | |
| parent | 17bc958e7e4737621c38bf732ebf9d79bfceaa4b (diff) | |
| download | gn-gemtext-4604c7316c97b1da2d1006daacd61867f275f570.tar.gz | |
Create DOL-mapping.gmi
| -rw-r--r-- | issues/DOL-mapping.gmi | 19 |
1 files changed, 19 insertions, 0 deletions
diff --git a/issues/DOL-mapping.gmi b/issues/DOL-mapping.gmi new file mode 100644 index 0000000..949efbd --- /dev/null +++ b/issues/DOL-mapping.gmi @@ -0,0 +1,19 @@ +# DOL group mapping issues + +## Tags + +* assigned: zsloan +* type: bug +* priority: medium +* status: in-progress +* keywords: mapping + +## Description + +After generating the genotype files for the Diversity Outbred Lung (DOL) group for Jacco Boon*, there were issues with GEMMA and R/qtl mapping. + +These issues seem to have been caused by a couple mitochondrial markers having a position of 0Mb. For now, I've addressed this by changing their positions to 0.000001 and 0.000002Mb respectively. + +There's also an issue that hasn't been addressed yet with displaying mitochondrial markers in the GN2 figure. GEMMA is outputting the results, so I suspect this is because mitochondria isn't included in the databased list of chromosomes associated with Mouse. + +* as described here - https://kbroman.org/qtl2/pages/prep_do_data.html |