GeneNetwork3 REST API for data science and machine learning http://git.genenetwork.org/genenetwork3/atom?h=migrate-to-python3.10 2023-07-10T08:36:47+00:00 2023-07-10T08:36:47+00:00 Frederick Muriuki Muriithi 2023-07-10T08:36:47+00:00 urn:sha1:c6ac30d4ccc26553a12e8c37cdf9078cbe9084b3 2023-04-25T06:42:36+00:00 Frederick Muriuki Muriithi 2023-04-25T06:42:36+00:00 urn:sha1:8471ed1187a8abc5e28207776c5f49a59ba24b92 Some roles should not be user-editable, and as such, we need to check before allowing any edits on such roles. This commit makes that possible. 2023-03-09T11:24:30+00:00 Frederick Muriuki Muriithi 2023-03-09T11:24:30+00:00 urn:sha1:726460a2ca4817a1b7a5c7798147996d7b7e5e2d Implement the code to migrate the data from redis to SQLite. 2023-02-03T12:15:26+00:00 Frederick Muriuki Muriithi 2023-02-03T12:15:26+00:00 urn:sha1:e6dd74a3fab65355c0aa187ee31d5ee74a888649 2023-02-02T09:03:51+00:00 Frederick Muriuki Muriithi 2023-02-02T08:35:51+00:00 urn:sha1:dfe5eb18e3ec8dc570d118bfe95c5d4dcb2c7575 Split the views/routes into separate modules each dealing with a narrower scope of the application to aid in maintenance, and help with making the development easier. 2023-01-23T11:30:20+00:00 Frederick Muriuki Muriithi 2023-01-23T11:30:20+00:00 urn:sha1:b9139c2356f75103bc5fd17f074f4ee0e74b64aa * gn3/auth/authorisation/checks.py: Enable passing user to authorisation checking function. Raise error on authorisation failure for consistent error handling. * gn3/auth/authorisation/groups.py: Add user to group, updating the privileges as appropriate. * gn3/auth/authorisation/resources.py: Fix resources querying * gn3/auth/authorisation/roles.py: Assign/revoke roles by name * gn3/auth/authorisation/views.py: Create group * migrations/auth/20221108_01_CoxYh-create-the-groups-table.py: Add group_metadata field * tests/unit/auth/fixtures/group_fixtures.py: fix tests * tests/unit/auth/test_groups.py: fix tests * tests/unit/auth/test_resources.py: fix tests * tests/unit/auth/test_roles.py: fix tests 2023-01-18T11:59:35+00:00 Frederick Muriuki Muriithi 2023-01-18T11:59:35+00:00 urn:sha1:4cc328ef78c7b8108d7623fdd4fcae5294317f2e Fix a number of tests and fixtures that were not conforming to the FOREIGN KEY constraints: * Each test that creates a new "object" needs to clean up after itself * Each fixture that sets up test data needs to clean up after itself 2023-01-16T09:14:24+00:00 Frederick Muriuki Muriithi 2023-01-16T09:14:24+00:00 urn:sha1:98dc0c5b1a67a7c7b97a1fa02211e9f99360edce Save privileges with ids of the form <top-level>:<sub-level>:<privilege-name> rather than using a UUID, to reduce indirection levels. * migrations/auth/20230116_01_KwuJ3-rework-privileges-schema.py: new migration to change the schema and IDs for the privileges. * Update code to use new privileges format * gn3/auth/authorisation/checks.py * gn3/auth/authorisation/groups.py * gn3/auth/authorisation/privileges.py * gn3/auth/authorisation/resources.py * gn3/auth/authorisation/roles.py * migrations/auth/20230116_01_KwuJ3-rework-privileges-schema.py * tests/unit/auth/fixtures/role_fixtures.py * tests/unit/auth/test_groups.py * tests/unit/auth/test_privileges.py * tests/unit/auth/test_roles.py 2023-01-03T03:16:28+00:00 Frederick Muriuki Muriithi 2023-01-03T02:49:53+00:00 urn:sha1:da33d719105d67afb1ee6b040380211cfa8be23d Since test functions are defined starting with "test_", rename the fixture to more clearly indicate it is a fixture (fxtr_*), an not a test in itself. 2022-12-12T10:29:45+00:00 Frederick Muriuki Muriithi 2022-12-12T10:29:45+00:00 urn:sha1:56b54da6fc6e97d5d6dac70f2393dcc98d93991c